Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13710

Experiment: R2A with silver chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with silver chloride 1 mM
3,062,666	+				-1.8
3,062,666	+				-0.9
3,062,667	-				+0.5
3,062,667	-				+0.9
3,062,729	+				-1.5
3,062,729	+				-3.6
3,062,729	+				-1.1
3,062,729	+				+0.3
3,062,729	+				-0.5
3,062,729	+				-3.6
3,062,729	+				-0.9
3,062,730	-				-0.1
3,062,730	-				+0.3
3,062,730	-				-1.1
3,062,807	+		LRK54_RS13710	0.17	+0.9
3,062,807	+		LRK54_RS13710	0.17	-1.5
3,062,808	-		LRK54_RS13710	0.17	-1.1
3,062,808	-		LRK54_RS13710	0.17	-3.0
3,062,808	-		LRK54_RS13710	0.17	-0.5
3,062,808	-		LRK54_RS13710	0.17	+0.3
3,062,808	-		LRK54_RS13710	0.17	-2.3
3,063,003	-		LRK54_RS13710	0.40	-3.6
3,063,140	+		LRK54_RS13710	0.57	+0.9
3,063,141	-		LRK54_RS13710	0.57	-0.1
3,063,141	-		LRK54_RS13710	0.57	-4.4
3,063,141	-		LRK54_RS13710	0.57	+0.3
3,063,141	-		LRK54_RS13710	0.57	-3.8
3,063,141	-		LRK54_RS13710	0.57	-1.9
3,063,141	-		LRK54_RS13710	0.57	+0.9
3,063,141	-		LRK54_RS13710	0.57	-3.6
3,063,141	-		LRK54_RS13710	0.57	-1.1
3,063,296	+		LRK54_RS13710	0.75	+0.9
3,063,298	+		LRK54_RS13710	0.75	-0.5
3,063,298	+		LRK54_RS13710	0.75	-2.7
3,063,298	+		LRK54_RS13710	0.75	-0.7
3,063,298	+		LRK54_RS13710	0.75	-1.7
3,063,298	+		LRK54_RS13710	0.75	-1.1
3,063,298	+		LRK54_RS13710	0.75	-2.5
3,063,298	+		LRK54_RS13710	0.75	-0.9
3,063,298	+		LRK54_RS13710	0.75	-1.5
3,063,298	+		LRK54_RS13710	0.75	-0.1
3,063,298	+		LRK54_RS13710	0.75	-2.9
3,063,298	+		LRK54_RS13710	0.75	-1.7
3,063,298	+		LRK54_RS13710	0.75	-0.7
3,063,298	+		LRK54_RS13710	0.75	+1.9
3,063,299	-		LRK54_RS13710	0.75	-2.4
3,063,299	-		LRK54_RS13710	0.75	-2.6
3,063,299	-		LRK54_RS13710	0.75	+1.9
3,063,299	-		LRK54_RS13710	0.75	-1.6
3,063,299	-		LRK54_RS13710	0.75	-2.7
3,063,299	-		LRK54_RS13710	0.75	-1.3
3,063,299	-		LRK54_RS13710	0.75	-1.1
3,063,299	-		LRK54_RS13710	0.75	-4.0
3,063,299	-		LRK54_RS13710	0.75	-0.5
3,063,299	-		LRK54_RS13710	0.75	+0.9
3,063,299	-		LRK54_RS13710	0.75	-2.2
3,063,299	-		LRK54_RS13710	0.75	+0.3
3,063,299	-		LRK54_RS13710	0.75	-0.1
3,063,484	-				-0.5
3,063,506	-				-0.3
3,063,506	-				-0.5
3,063,506	-				+0.0
3,063,506	-				+0.9
3,063,506	-				+0.9
3,063,506	-				-0.9
3,063,506	-				-1.3
3,063,506	-				+0.9
3,063,506	-				+0.1
3,063,548	+				-0.5
3,063,548	+				+0.3
3,063,630	-				+0.9
3,064,117	+				-0.6
3,064,118	-				+1.9
3,064,118	-				+0.4
3,064,118	-				-0.1
3,064,364	-		LRK54_RS13720	0.29	+0.8
3,064,364	-		LRK54_RS13720	0.29	+0.4
3,064,364	-		LRK54_RS13720	0.29	+1.7
3,064,364	-		LRK54_RS13720	0.29	-1.1
3,064,364	-		LRK54_RS13720	0.29	-0.3
3,064,364	-		LRK54_RS13720	0.29	+0.4
3,064,394	-		LRK54_RS13720	0.32	+1.1
3,064,394	-		LRK54_RS13720	0.32	-0.1
3,064,394	-		LRK54_RS13720	0.32	-0.7
3,064,394	-		LRK54_RS13720	0.32	+1.1
3,064,394	-		LRK54_RS13720	0.32	-0.5
3,064,394	-		LRK54_RS13720	0.32	-1.8
3,064,394	-		LRK54_RS13720	0.32	-0.5
3,064,394	-		LRK54_RS13720	0.32	-1.4
3,064,394	-		LRK54_RS13720	0.32	+0.9
3,064,394	-		LRK54_RS13720	0.32	-1.7
3,064,394	-		LRK54_RS13720	0.32	-0.3
3,064,394	-		LRK54_RS13720	0.32	+0.4
3,064,466	-		LRK54_RS13720	0.39	+1.5
3,064,466	-		LRK54_RS13720	0.39	-1.5
3,064,466	-		LRK54_RS13720	0.39	-0.1
3,064,466	-		LRK54_RS13720	0.39	-0.0
3,064,466	-		LRK54_RS13720	0.39	-0.3
3,064,478	-		LRK54_RS13720	0.41	-0.9
3,064,478	-		LRK54_RS13720	0.41	-0.3
3,064,478	-		LRK54_RS13720	0.41	-0.4
3,064,493	-		LRK54_RS13720	0.42	-1.3
3,064,493	-		LRK54_RS13720	0.42	-0.2