Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13310

Experiment: R2A with silver chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with silver chloride 1 mM
2,987,554	+		LRK54_RS13305	0.37	-0.4
2,987,554	+		LRK54_RS13305	0.37	-1.2
2,987,554	+		LRK54_RS13305	0.37	+1.8
2,987,554	+		LRK54_RS13305	0.37	+0.8
2,987,554	+		LRK54_RS13305	0.37	-2.0
2,987,554	+		LRK54_RS13305	0.37	+0.9
2,987,554	+		LRK54_RS13305	0.37	-1.2
2,987,554	+		LRK54_RS13305	0.37	-1.3
2,987,554	+		LRK54_RS13305	0.37	-0.4
2,987,554	+		LRK54_RS13305	0.37	-2.5
2,987,554	+		LRK54_RS13305	0.37	+0.8
2,987,554	+		LRK54_RS13305	0.37	-0.2
2,987,554	+		LRK54_RS13305	0.37	+0.7
2,987,554	+		LRK54_RS13305	0.37	+0.3
2,987,554	+		LRK54_RS13305	0.37	+0.6
2,987,554	+		LRK54_RS13305	0.37	+1.4
2,987,554	+		LRK54_RS13305	0.37	+1.4
2,987,554	+		LRK54_RS13305	0.37	-1.0
2,987,554	+		LRK54_RS13305	0.37	-0.6
2,987,554	+		LRK54_RS13305	0.37	+0.1
2,987,554	+		LRK54_RS13305	0.37	-0.4
2,987,554	+		LRK54_RS13305	0.37	-1.3
2,987,554	+		LRK54_RS13305	0.37	+0.4
2,987,554	+		LRK54_RS13305	0.37	+0.1
2,987,554	+		LRK54_RS13305	0.37	+0.9
2,987,554	+		LRK54_RS13305	0.37	+0.4
2,987,554	+		LRK54_RS13305	0.37	-1.6
2,987,554	+		LRK54_RS13305	0.37	+0.0
2,987,554	+		LRK54_RS13305	0.37	-0.2
2,987,554	+		LRK54_RS13305	0.37	-0.6
2,987,554	+		LRK54_RS13305	0.37	+0.8
2,987,554	+		LRK54_RS13305	0.37	+0.9
2,987,554	+		LRK54_RS13305	0.37	-1.0
2,987,554	+		LRK54_RS13305	0.37	-1.2
2,987,555	-		LRK54_RS13305	0.37	+0.2
2,987,555	-		LRK54_RS13305	0.37	+0.5
2,987,555	-		LRK54_RS13305	0.37	-0.9
2,987,555	-		LRK54_RS13305	0.37	+0.6
2,987,555	-		LRK54_RS13305	0.37	-1.6
2,987,555	-		LRK54_RS13305	0.37	-0.0
2,987,555	-		LRK54_RS13305	0.37	-0.8
2,987,555	-		LRK54_RS13305	0.37	-0.2
2,987,555	-		LRK54_RS13305	0.37	-2.8
2,987,555	-		LRK54_RS13305	0.37	-0.4
2,987,555	-		LRK54_RS13305	0.37	+0.3
2,987,555	-		LRK54_RS13305	0.37	+0.9
2,987,555	-		LRK54_RS13305	0.37	-2.3
2,987,555	-		LRK54_RS13305	0.37	-0.3
2,987,555	-		LRK54_RS13305	0.37	+0.7
2,987,555	-		LRK54_RS13305	0.37	+1.3
2,987,555	-		LRK54_RS13305	0.37	-2.0
2,987,555	-		LRK54_RS13305	0.37	+3.5
2,987,555	-		LRK54_RS13305	0.37	+0.1
2,987,555	-		LRK54_RS13305	0.37	+0.1
2,987,555	-		LRK54_RS13305	0.37	-2.6
2,987,555	-		LRK54_RS13305	0.37	+0.3
2,987,555	-		LRK54_RS13305	0.37	+1.6
2,987,555	-		LRK54_RS13305	0.37	-1.4
2,987,555	-		LRK54_RS13305	0.37	+0.2
2,987,555	-		LRK54_RS13305	0.37	+1.1
2,987,555	-		LRK54_RS13305	0.37	+0.3
2,987,555	-		LRK54_RS13305	0.37	+0.6
2,987,555	-		LRK54_RS13305	0.37	-0.2
2,987,555	-		LRK54_RS13305	0.37	+2.0
2,987,555	-		LRK54_RS13305	0.37	+1.1
2,987,555	-		LRK54_RS13305	0.37	-1.2
2,987,555	-		LRK54_RS13305	0.37	+1.9
2,987,555	-		LRK54_RS13305	0.37	-2.3
2,987,555	-		LRK54_RS13305	0.37	+0.3
2,987,555	-		LRK54_RS13305	0.37	-0.1
2,987,636	+		LRK54_RS13305	0.49	-0.8
2,987,637	-		LRK54_RS13305	0.49	+0.6
2,987,656	+		LRK54_RS13305	0.51	+0.0
2,987,656	+		LRK54_RS13305	0.51	-2.9
2,987,656	+		LRK54_RS13305	0.51	+1.0
2,987,656	+		LRK54_RS13305	0.51	-0.0
2,987,656	+		LRK54_RS13305	0.51	+1.5
2,987,656	+		LRK54_RS13305	0.51	+1.1
2,987,656	+		LRK54_RS13305	0.51	-2.3
2,987,656	+		LRK54_RS13305	0.51	-0.1
2,987,657	-		LRK54_RS13305	0.52	-1.6
2,987,657	-		LRK54_RS13305	0.52	-1.3
2,987,657	-		LRK54_RS13305	0.52	+1.4
2,987,657	-		LRK54_RS13305	0.52	+0.6
2,987,657	-		LRK54_RS13305	0.52	+0.9
2,987,657	-		LRK54_RS13305	0.52	-1.3
2,987,657	-		LRK54_RS13305	0.52	-0.9
2,987,657	-		LRK54_RS13305	0.52	-1.6
2,987,657	-		LRK54_RS13305	0.52	+0.9
2,987,681	+		LRK54_RS13305	0.55	+0.4
2,987,681	+		LRK54_RS13305	0.55	+0.9
2,987,681	+		LRK54_RS13305	0.55	-3.4
2,987,681	+		LRK54_RS13305	0.55	-0.1
2,987,682	-		LRK54_RS13305	0.55	+1.0
2,987,682	-		LRK54_RS13305	0.55	+0.2
2,987,682	-		LRK54_RS13305	0.55	+0.0
2,987,682	-		LRK54_RS13305	0.55	-1.2
2,987,682	-		LRK54_RS13305	0.55	-0.7
2,987,682	-		LRK54_RS13305	0.55	-1.3
2,987,682	-		LRK54_RS13305	0.55	-0.9
2,987,728	+		LRK54_RS13305	0.62	+0.3
2,987,728	+		LRK54_RS13305	0.62	-1.1
2,987,728	+		LRK54_RS13305	0.62	+2.2
2,987,728	+		LRK54_RS13305	0.62	+0.5
2,987,729	-		LRK54_RS13305	0.62	+0.6
2,987,729	-		LRK54_RS13305	0.62	-0.4
2,987,729	-		LRK54_RS13305	0.62	-2.3
2,987,729	-		LRK54_RS13305	0.62	-0.6
2,987,729	-		LRK54_RS13305	0.62	+1.1
2,987,729	-		LRK54_RS13305	0.62	-3.2
2,987,729	-		LRK54_RS13305	0.62	-2.4
2,987,729	-		LRK54_RS13305	0.62	-1.4
2,987,729	-		LRK54_RS13305	0.62	-0.1
2,987,729	-		LRK54_RS13305	0.62	+2.0
2,987,729	-		LRK54_RS13305	0.62	+0.4
2,987,729	-		LRK54_RS13305	0.62	+0.9
2,987,772	+		LRK54_RS13305	0.68	-0.9
2,987,772	+		LRK54_RS13305	0.68	+0.4
2,987,772	+		LRK54_RS13305	0.68	-3.6
2,987,772	+		LRK54_RS13305	0.68	-1.1
2,987,772	+		LRK54_RS13305	0.68	-1.1
2,987,772	+		LRK54_RS13305	0.68	+0.8
2,987,772	+		LRK54_RS13305	0.68	+0.7
2,987,772	+		LRK54_RS13305	0.68	-1.4
2,987,773	-		LRK54_RS13305	0.68	+0.6
2,987,773	-		LRK54_RS13305	0.68	-0.6
2,987,773	-		LRK54_RS13305	0.68	+1.0
2,987,773	-		LRK54_RS13305	0.68	-0.8
2,987,773	-		LRK54_RS13305	0.68	+0.9
2,987,773	-		LRK54_RS13305	0.68	+1.1
2,987,773	-		LRK54_RS13305	0.68	-1.5
2,987,805	+		LRK54_RS13305	0.72	+0.9
2,987,805	+		LRK54_RS13305	0.72	-1.4
2,987,805	+		LRK54_RS13305	0.72	-0.8
2,987,805	+		LRK54_RS13305	0.72	+2.9
2,987,805	+		LRK54_RS13305	0.72	+0.9
2,987,805	+		LRK54_RS13305	0.72	-0.3
2,987,805	+		LRK54_RS13305	0.72	+0.8
2,987,805	+		LRK54_RS13305	0.72	-1.0
2,987,805	+		LRK54_RS13305	0.72	+0.8
2,987,806	-		LRK54_RS13305	0.73	-1.0
2,987,806	-		LRK54_RS13305	0.73	-1.3
2,987,806	-		LRK54_RS13305	0.73	-0.9
2,987,806	-		LRK54_RS13305	0.73	-1.7
2,987,806	-		LRK54_RS13305	0.73	+0.3
2,987,806	-		LRK54_RS13305	0.73	+0.3
2,987,806	-		LRK54_RS13305	0.73	-1.1
2,987,806	-		LRK54_RS13305	0.73	+0.5
2,987,806	-		LRK54_RS13305	0.73	-0.8
2,987,806	-		LRK54_RS13305	0.73	-0.2
2,987,806	-		LRK54_RS13305	0.73	+1.4
2,987,806	-		LRK54_RS13305	0.73	+0.5
2,987,806	-		LRK54_RS13305	0.73	+1.5
2,987,806	-		LRK54_RS13305	0.73	+0.6
2,987,961	+				-0.8
2,987,961	+				-0.4
2,987,962	-				-1.3
2,987,962	-				-1.4
2,987,962	-				-0.4
2,988,035	+				-1.3
2,988,069	+				-1.3
2,988,069	+				-1.6
2,988,069	+				+1.3
2,988,070	-				+0.6
2,988,070	-				-2.4
2,988,070	-				-1.3
2,988,070	-				-1.4
2,988,070	-				+0.9
2,988,070	-				+1.0
2,988,070	-				+0.7
2,988,079	+				-0.9
2,988,080	-				-2.2
2,988,099	+				-1.6
2,988,099	+				-2.8
2,988,100	-				+0.1
2,988,141	+				-2.4
2,988,178	+				+0.3
2,988,178	+				+0.0
2,988,179	-				-0.4
2,988,179	-				-1.7
2,988,179	-				+2.3
2,988,182	+				+0.0
2,988,182	+				-1.3
2,988,182	+				+0.3
2,988,182	+				-1.7
2,988,182	+				-0.6
2,988,183	-				+1.9
2,988,183	-				-2.4
2,988,183	-				-0.8
2,988,183	-				+1.1
2,988,183	-				+0.3
2,988,248	+				-2.2
2,988,249	-				-0.5
2,988,249	-				-3.0
2,988,280	+				-1.5
2,988,280	+				-2.6
2,988,280	+				+0.2
2,988,280	+				+0.3
2,988,280	+				-0.3
2,988,280	+				+0.1
2,988,280	+				-2.5
2,988,280	+				-0.6
2,988,280	+				+1.3
2,988,281	-				-0.6
2,988,281	-				+1.6
2,988,281	-				-1.3
2,988,281	-				-0.5
2,988,281	-				-0.8
2,988,281	-				-0.8
2,988,281	-				-0.8
2,988,281	-				+0.6
2,988,281	-				-0.5
2,988,281	-				-0.0
2,988,281	-				+0.2
2,988,281	-				+1.5
2,988,281	-				-2.3
2,988,281	-				+0.7
2,988,281	-				-1.1
2,988,281	-				-2.8
2,988,281	-				-0.5
2,988,400	+				-1.6
2,988,400	+				+1.5
2,988,400	+				-0.9
2,988,400	+				-1.3
2,988,401	-				+0.8
2,988,401	-				-0.7
2,988,401	-				-0.1
2,988,401	-				+0.1
2,988,401	-				+1.3
2,988,401	-				-2.2
2,988,531	+		LRK54_RS13310	0.14	-0.7
2,988,531	+		LRK54_RS13310	0.14	+1.9
2,988,531	+		LRK54_RS13310	0.14	+0.1
2,988,531	+		LRK54_RS13310	0.14	-0.5
2,988,531	+		LRK54_RS13310	0.14	+0.9
2,988,531	+		LRK54_RS13310	0.14	-0.2
2,988,531	+		LRK54_RS13310	0.14	+0.5
2,988,531	+		LRK54_RS13310	0.14	-0.3
2,988,531	+		LRK54_RS13310	0.14	-2.5
2,988,531	+		LRK54_RS13310	0.14	+1.3
2,988,531	+		LRK54_RS13310	0.14	-1.4
2,988,531	+		LRK54_RS13310	0.14	+1.0
2,988,531	+		LRK54_RS13310	0.14	+0.1
2,988,531	+		LRK54_RS13310	0.14	-0.1
2,988,531	+		LRK54_RS13310	0.14	-0.5
2,988,531	+		LRK54_RS13310	0.14	+1.5
2,988,531	+		LRK54_RS13310	0.14	-0.6
2,988,531	+		LRK54_RS13310	0.14	-2.0
2,988,531	+		LRK54_RS13310	0.14	-0.1
2,988,531	+		LRK54_RS13310	0.14	-0.5
2,988,531	+		LRK54_RS13310	0.14	-1.0
2,988,531	+		LRK54_RS13310	0.14	-2.8
2,988,531	+		LRK54_RS13310	0.14	+1.2
2,988,531	+		LRK54_RS13310	0.14	+0.7
2,988,531	+		LRK54_RS13310	0.14	+0.5
2,988,531	+		LRK54_RS13310	0.14	+1.9
2,988,531	+		LRK54_RS13310	0.14	-0.9
2,988,531	+		LRK54_RS13310	0.14	+1.3
2,988,531	+		LRK54_RS13310	0.14	+1.4
2,988,531	+		LRK54_RS13310	0.14	-1.9
2,988,531	+		LRK54_RS13310	0.14	-1.6
2,988,531	+		LRK54_RS13310	0.14	-1.5
2,988,532	-		LRK54_RS13310	0.14	+0.6
2,988,532	-		LRK54_RS13310	0.14	-0.4
2,988,532	-		LRK54_RS13310	0.14	-1.7
2,988,532	-		LRK54_RS13310	0.14	-0.7
2,988,532	-		LRK54_RS13310	0.14	+0.3
2,988,532	-		LRK54_RS13310	0.14	-2.6
2,988,532	-		LRK54_RS13310	0.14	-0.2
2,988,532	-		LRK54_RS13310	0.14	+0.3
2,988,532	-		LRK54_RS13310	0.14	-0.8
2,988,532	-		LRK54_RS13310	0.14	-1.0
2,988,532	-		LRK54_RS13310	0.14	+0.2
2,988,532	-		LRK54_RS13310	0.14	+1.9
2,988,532	-		LRK54_RS13310	0.14	-0.2
2,988,532	-		LRK54_RS13310	0.14	-0.6
2,988,532	-		LRK54_RS13310	0.14	-0.9
2,988,532	-		LRK54_RS13310	0.14	+0.5
2,988,532	-		LRK54_RS13310	0.14	+1.6
2,988,532	-		LRK54_RS13310	0.14	-0.9
2,988,532	-		LRK54_RS13310	0.14	+0.0
2,988,532	-		LRK54_RS13310	0.14	-0.2
2,988,532	-		LRK54_RS13310	0.14	+0.3
2,988,532	-		LRK54_RS13310	0.14	+0.1
2,988,532	-		LRK54_RS13310	0.14	+0.8
2,988,532	-		LRK54_RS13310	0.14	+1.8
2,988,532	-		LRK54_RS13310	0.14	-0.7
2,988,532	-		LRK54_RS13310	0.14	+0.3
2,988,532	-		LRK54_RS13310	0.14	-1.0
2,988,532	-		LRK54_RS13310	0.14	+0.1
2,988,532	-		LRK54_RS13310	0.14	+0.8
2,988,532	-		LRK54_RS13310	0.14	+1.1
2,988,532	-		LRK54_RS13310	0.14	-0.5
2,988,532	-		LRK54_RS13310	0.14	+0.5
2,988,532	-		LRK54_RS13310	0.14	-0.5
2,988,532	-		LRK54_RS13310	0.14	-2.2
2,988,532	-		LRK54_RS13310	0.14	+1.1
2,988,532	-		LRK54_RS13310	0.14	-1.0
2,988,532	-		LRK54_RS13310	0.14	-2.7
2,988,532	-		LRK54_RS13310	0.14	-1.5
2,988,532	-		LRK54_RS13310	0.14	-1.3
2,988,532	-		LRK54_RS13310	0.14	-0.8
2,988,618	+		LRK54_RS13310	0.26	+0.3
2,988,619	-		LRK54_RS13310	0.26	-1.0
2,988,619	-		LRK54_RS13310	0.26	-1.9
2,988,619	-		LRK54_RS13310	0.26	+0.9
2,988,619	-		LRK54_RS13310	0.26	-0.3
2,988,619	-		LRK54_RS13310	0.26	-1.2
2,988,747	+		LRK54_RS13310	0.43	+0.7
2,988,747	+		LRK54_RS13310	0.43	+0.6
2,988,747	+		LRK54_RS13310	0.43	+0.3
2,988,747	+		LRK54_RS13310	0.43	-0.0
2,988,747	+		LRK54_RS13310	0.43	-0.8
2,988,747	+		LRK54_RS13310	0.43	-2.0
2,988,747	+		LRK54_RS13310	0.43	+0.3
2,988,747	+		LRK54_RS13310	0.43	-1.1
2,988,747	+		LRK54_RS13310	0.43	+0.2
2,988,747	+		LRK54_RS13310	0.43	-1.7
2,988,747	+		LRK54_RS13310	0.43	-1.0
2,988,747	+		LRK54_RS13310	0.43	-1.3
2,988,748	-		LRK54_RS13310	0.44	+0.9
2,988,748	-		LRK54_RS13310	0.44	-3.0
2,988,748	-		LRK54_RS13310	0.44	-2.1
2,988,748	-		LRK54_RS13310	0.44	-0.8
2,988,748	-		LRK54_RS13310	0.44	+1.7
2,988,748	-		LRK54_RS13310	0.44	-0.1
2,988,748	-		LRK54_RS13310	0.44	+2.6
2,988,748	-		LRK54_RS13310	0.44	-0.1
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