Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08525

Experiment: R2A with silver chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with silver chloride 1 mM
1,858,852	+		LRK54_RS08520	0.34	-2.9
1,858,852	+		LRK54_RS08520	0.34	-1.7
1,858,852	+		LRK54_RS08520	0.34	-3.1
1,858,852	+		LRK54_RS08520	0.34	-1.8
1,858,852	+		LRK54_RS08520	0.34	-1.4
1,858,852	+		LRK54_RS08520	0.34	-2.1
1,858,852	+		LRK54_RS08520	0.34	-1.6
1,858,852	+		LRK54_RS08520	0.34	-2.2
1,858,852	+		LRK54_RS08520	0.34	-2.5
1,858,852	+		LRK54_RS08520	0.34	-1.4
1,858,852	+		LRK54_RS08520	0.34	-3.1
1,858,852	+		LRK54_RS08520	0.34	-1.7
1,858,852	+		LRK54_RS08520	0.34	-0.7
1,858,852	+		LRK54_RS08520	0.34	-1.0
1,858,852	+		LRK54_RS08520	0.34	-1.4
1,858,852	+		LRK54_RS08520	0.34	-2.3
1,858,852	+		LRK54_RS08520	0.34	-0.6
1,858,853	-		LRK54_RS08520	0.34	-0.6
1,858,853	-		LRK54_RS08520	0.34	-2.3
1,858,853	-		LRK54_RS08520	0.34	-2.0
1,858,853	-		LRK54_RS08520	0.34	-0.8
1,858,853	-		LRK54_RS08520	0.34	+0.8
1,858,853	-		LRK54_RS08520	0.34	-2.2
1,858,853	-		LRK54_RS08520	0.34	-1.9
1,858,853	-		LRK54_RS08520	0.34	-3.6
1,858,853	-		LRK54_RS08520	0.34	-0.6
1,858,853	-		LRK54_RS08520	0.34	-2.7
1,858,853	-		LRK54_RS08520	0.34	-1.6
1,858,853	-		LRK54_RS08520	0.34	-0.8
1,859,136	+		LRK54_RS08520	0.55	-2.8
1,859,136	+		LRK54_RS08520	0.55	+0.2
1,859,136	+		LRK54_RS08520	0.55	-0.6
1,859,136	+		LRK54_RS08520	0.55	+0.2
1,859,136	+		LRK54_RS08520	0.55	-1.7
1,859,136	+		LRK54_RS08520	0.55	-1.7
1,859,136	+		LRK54_RS08520	0.55	-3.3
1,859,136	+		LRK54_RS08520	0.55	-2.9
1,859,137	-		LRK54_RS08520	0.55	-1.7
1,859,137	-		LRK54_RS08520	0.55	-3.3
1,859,137	-		LRK54_RS08520	0.55	-2.9
1,859,137	-		LRK54_RS08520	0.55	-1.0
1,859,137	-		LRK54_RS08520	0.55	-3.0
1,859,137	-		LRK54_RS08520	0.55	-1.0
1,859,137	-		LRK54_RS08520	0.55	+0.4
1,859,137	-		LRK54_RS08520	0.55	-2.9
1,859,137	-		LRK54_RS08520	0.55	-4.8
1,859,137	-		LRK54_RS08520	0.55	-2.0
1,859,137	-		LRK54_RS08520	0.55	+1.2
1,859,137	-		LRK54_RS08520	0.55	-1.8
1,859,137	-		LRK54_RS08520	0.55	-2.6
1,859,422	+		LRK54_RS08520	0.76	-2.1
1,859,422	+		LRK54_RS08520	0.76	-1.8
1,859,422	+		LRK54_RS08520	0.76	-0.2
1,859,422	+		LRK54_RS08520	0.76	-2.4
1,859,422	+		LRK54_RS08520	0.76	-3.0
1,859,422	+		LRK54_RS08520	0.76	-0.8
1,859,422	+		LRK54_RS08520	0.76	-2.0
1,859,422	+		LRK54_RS08520	0.76	-0.2
1,859,422	+		LRK54_RS08520	0.76	-1.4
1,859,422	+		LRK54_RS08520	0.76	-1.6
1,859,422	+		LRK54_RS08520	0.76	-1.6
1,859,422	+		LRK54_RS08520	0.76	+1.8
1,859,422	+		LRK54_RS08520	0.76	-0.2
1,859,422	+		LRK54_RS08520	0.76	-1.6
1,859,422	+		LRK54_RS08520	0.76	-1.2
1,859,422	+		LRK54_RS08520	0.76	-2.2
1,859,422	+		LRK54_RS08520	0.76	-0.0
1,859,422	+		LRK54_RS08520	0.76	-2.8
1,859,422	+		LRK54_RS08520	0.76	-4.7
1,859,422	+		LRK54_RS08520	0.76	+2.5
1,859,422	+		LRK54_RS08520	0.76	-1.8
1,859,422	+		LRK54_RS08520	0.76	-2.4
1,859,422	+		LRK54_RS08520	0.76	+0.8
1,859,422	+		LRK54_RS08520	0.76	-2.1
1,859,423	-		LRK54_RS08520	0.76	-2.1
1,859,423	-		LRK54_RS08520	0.76	-0.2
1,859,423	-		LRK54_RS08520	0.76	-2.8
1,859,423	-		LRK54_RS08520	0.76	-0.2
1,859,423	-		LRK54_RS08520	0.76	-4.3
1,859,423	-		LRK54_RS08520	0.76	-0.6
1,859,423	-		LRK54_RS08520	0.76	+0.8
1,859,423	-		LRK54_RS08520	0.76	-1.0
1,859,423	-		LRK54_RS08520	0.76	-2.4
1,859,423	-		LRK54_RS08520	0.76	+0.2
1,859,423	-		LRK54_RS08520	0.76	-1.4
1,859,423	-		LRK54_RS08520	0.76	-2.5
1,859,423	-		LRK54_RS08520	0.76	-1.4
1,859,423	-		LRK54_RS08520	0.76	-3.0
1,859,423	-		LRK54_RS08520	0.76	-0.8
1,859,423	-		LRK54_RS08520	0.76	+1.8
1,859,423	-		LRK54_RS08520	0.76	-3.6
1,859,423	-		LRK54_RS08520	0.76	-0.6
1,859,423	-		LRK54_RS08520	0.76	-0.8
1,859,423	-		LRK54_RS08520	0.76	-4.6
1,859,423	-		LRK54_RS08520	0.76	-0.2
1,859,423	-		LRK54_RS08520	0.76	-2.5
1,859,423	-		LRK54_RS08520	0.76	-2.3
1,859,423	-		LRK54_RS08520	0.76	-1.6
1,859,473	+		LRK54_RS08520	0.80	-2.9
1,859,473	+		LRK54_RS08520	0.80	+0.9
1,859,473	+		LRK54_RS08520	0.80	-0.8
1,859,473	+		LRK54_RS08520	0.80	-0.6
1,859,473	+		LRK54_RS08520	0.80	-2.8
1,859,473	+		LRK54_RS08520	0.80	-0.2
1,859,473	+		LRK54_RS08520	0.80	-0.8
1,859,473	+		LRK54_RS08520	0.80	-2.4
1,859,473	+		LRK54_RS08520	0.80	-1.2
1,859,473	+		LRK54_RS08520	0.80	-1.0
1,859,473	+		LRK54_RS08520	0.80	+0.2
1,859,473	+		LRK54_RS08520	0.80	-1.8
1,859,473	+		LRK54_RS08520	0.80	-3.6
1,859,473	+		LRK54_RS08520	0.80	+0.8
1,859,473	+		LRK54_RS08520	0.80	+0.2
1,859,473	+		LRK54_RS08520	0.80	-1.9
1,859,473	+		LRK54_RS08520	0.80	+0.8
1,859,473	+		LRK54_RS08520	0.80	+1.0
1,859,473	+		LRK54_RS08520	0.80	-0.8
1,859,473	+		LRK54_RS08520	0.80	-2.6
1,859,474	-		LRK54_RS08520	0.80	-2.6
1,859,474	-		LRK54_RS08520	0.80	-1.9
1,859,474	-		LRK54_RS08520	0.80	-2.9
1,859,474	-		LRK54_RS08520	0.80	-2.0
1,859,474	-		LRK54_RS08520	0.80	-2.1
1,859,474	-		LRK54_RS08520	0.80	-1.7
1,859,474	-		LRK54_RS08520	0.80	-2.0
1,859,474	-		LRK54_RS08520	0.80	+0.2
1,859,474	-		LRK54_RS08520	0.80	-0.5
1,859,474	-		LRK54_RS08520	0.80	-0.9
1,859,474	-		LRK54_RS08520	0.80	-1.8
1,859,474	-		LRK54_RS08520	0.80	-1.4
1,859,474	-		LRK54_RS08520	0.80	-2.4
1,859,474	-		LRK54_RS08520	0.80	-0.2
1,859,474	-		LRK54_RS08520	0.80	-1.9
1,859,698	+				-2.0
1,859,698	+				-2.0
1,859,698	+				-2.4
1,859,698	+				-0.6
1,859,698	+				-1.4
1,859,698	+				-0.2
1,859,698	+				-1.8
1,859,698	+				-1.9
1,859,698	+				-0.8
1,859,698	+				-2.1
1,859,698	+				-3.2
1,859,698	+				-0.8
1,859,698	+				-1.4
1,859,698	+				-2.2
1,859,698	+				-2.2
1,859,698	+				-1.4
1,859,698	+				-1.4
1,859,698	+				-2.3
1,859,698	+				-1.6
1,859,698	+				-1.0
1,859,698	+				-3.4
1,859,699	-				-2.9
1,859,699	-				-0.8
1,859,699	-				+0.2
1,859,699	-				-1.4
1,859,699	-				-1.2
1,859,699	-				-3.6
1,859,699	-				-0.6
1,859,699	-				-3.1
1,859,699	-				+0.2
1,859,699	-				-2.9
1,859,699	-				-2.3
1,859,699	-				-1.9
1,859,699	-				-2.1
1,859,699	-				-3.1
1,859,699	-				-1.8
1,859,699	-				-0.2
1,859,699	-				+0.2
1,859,779	-				+0.4
1,859,779	-				-0.2
1,859,884	+				-2.0
1,859,884	+				+1.4
1,859,884	+				-1.5
1,859,884	+				-2.8
1,859,884	+				-1.0
1,859,884	+				-2.7
1,859,884	+				-1.2
1,859,884	+				-0.6
1,859,884	+				-4.0
1,859,884	+				-1.3
1,859,884	+				-3.7
1,859,884	+				-1.0
1,859,884	+				+0.8
1,859,884	+				-1.2
1,859,884	+				-2.6
1,859,884	+				-2.2
1,859,884	+				-2.1
1,859,884	+				-1.6
1,859,884	+				-2.1
1,859,884	+				+0.1
1,859,884	+				-1.5
1,859,884	+				-3.0
1,859,884	+				-0.6
1,859,884	+				-2.2
1,859,884	+				-3.8
1,859,884	+				+0.8
1,859,884	+				+0.4
1,859,884	+				-2.5
1,859,884	+				-1.2
1,859,884	+				-2.8
1,859,884	+				-2.2
1,859,884	+				-1.6
1,859,884	+				-3.7
1,859,884	+				-2.6
1,859,884	+				-2.6
1,859,885	-				-2.4
1,859,885	-				-1.8
1,859,885	-				-2.3
1,859,885	-				-1.9
1,859,885	-				-0.2
1,859,885	-				-3.4
1,859,885	-				-1.3
1,859,885	-				-1.0
1,859,885	-				-1.2
1,859,885	-				-1.2
1,859,885	-				-3.5
1,859,885	-				-3.4
1,859,885	-				-1.8
1,859,885	-				-2.4
1,859,885	-				-0.3
1,859,885	-				-0.7
1,859,885	-				-2.3
1,859,885	-				-2.4
1,859,885	-				-0.9
1,859,885	-				+0.7
1,859,885	-				+0.2
1,859,885	-				-3.2
1,859,885	-				-0.6
1,859,885	-				+1.8
1,859,885	-				-0.2
1,859,885	-				-0.6
1,859,885	-				-4.1
1,859,885	-				+1.8
1,859,885	-				-1.8
1,859,885	-				-1.0
1,859,885	-				-3.5
1,859,885	-				-2.7
1,860,417	+				-1.4
1,860,417	+				+0.2
1,860,417	+				-2.2
1,860,417	+				-0.2
1,860,417	+				+0.8
1,860,417	+				-1.4
1,860,417	+				-1.9
1,860,417	+				-1.3
1,860,417	+				-0.2
1,860,417	+				-0.1
1,860,417	+				-1.2
1,860,417	+				-0.2
1,860,417	+				-0.2
1,860,417	+				-2.9
1,860,417	+				-1.7
1,860,417	+				-0.2
1,860,417	+				-1.4
1,860,417	+				-2.7
1,860,417	+				-0.2
1,860,418	-				+0.7
1,860,418	-				-1.1
1,860,418	-				+0.2
1,860,418	-				+0.8
1,860,418	-				+0.1
1,860,418	-				-1.8
1,860,418	-				-0.4
1,860,418	-				-0.8
1,860,418	-				-0.7
1,860,418	-				-0.1
1,860,418	-				-0.9
1,860,418	-				+0.8
1,860,418	-				-0.8
1,860,418	-				+0.0
1,860,418	-				+2.6
1,860,418	-				-0.2
1,860,418	-				-0.6
1,860,418	-				+1.1
1,860,418	-				+0.2
1,860,418	-				+0.7
1,860,418	-				-0.8
1,860,418	-				-0.4
1,860,418	-				-0.7
1,860,418	-				-0.7
1,860,418	-				+0.2
1,860,418	-				-1.1
1,860,418	-				+0.8
1,860,421	+				-0.8
1,860,421	+				-0.6
1,860,421	+				-1.8
1,860,421	+				+0.8
1,860,421	+				-1.6
1,860,421	+				-0.6
1,860,421	+				-1.2
1,860,421	+				-0.2
1,860,421	+				-3.6
1,860,421	+				-3.5
1,860,421	+				-2.5
1,860,421	+				-0.6
1,860,421	+				+0.2
1,860,421	+				-3.7
1,860,421	+				-1.2
1,860,421	+				-3.5
1,860,421	+				-2.6
1,860,421	+				-3.6
1,860,422	-				+0.5
1,860,422	-				-0.2
1,860,422	-				-0.4
1,860,422	-				+0.0
1,860,422	-				-0.4
1,860,422	-				+1.4
1,860,422	-				-0.7
1,860,422	-				+0.7
1,860,422	-				-0.8
1,860,422	-				-1.8
1,860,422	-				-1.6
1,860,422	-				+1.0
1,860,422	-				+0.8
1,860,422	-				+1.6
1,860,422	-				-1.4
1,860,422	-				+0.9
1,860,422	-				+0.3
1,860,422	-				+0.8
1,860,422	-				-1.0
1,860,422	-				+3.3
1,860,422	-				+0.8
1,860,422	-				+1.4
1,860,422	-				-1.7
1,860,422	-				-0.2
1,860,654	+		LRK54_RS08530	0.18	+1.8
1,860,654	+		LRK54_RS08530	0.18	-1.5
1,860,654	+		LRK54_RS08530	0.18	-0.5
1,860,654	+		LRK54_RS08530	0.18	+0.5
1,860,654	+		LRK54_RS08530	0.18	-1.7
1,860,654	+		LRK54_RS08530	0.18	-0.4
1,860,654	+		LRK54_RS08530	0.18	-2.0
1,860,654	+		LRK54_RS08530	0.18	-0.9
1,860,654	+		LRK54_RS08530	0.18	-0.6
1,860,654	+		LRK54_RS08530	0.18	+1.2
1,860,654	+		LRK54_RS08530	0.18	-0.2
1,860,654	+		LRK54_RS08530	0.18	-0.6
1,860,654	+		LRK54_RS08530	0.18	-2.4
1,860,654	+		LRK54_RS08530	0.18	+0.2
1,860,654	+		LRK54_RS08530	0.18	+0.4
1,860,654	+		LRK54_RS08530	0.18	-0.4
1,860,654	+		LRK54_RS08530	0.18	-1.2
1,860,655	-		LRK54_RS08530	0.18	+0.5
1,860,655	-		LRK54_RS08530	0.18	-0.5
1,860,655	-		LRK54_RS08530	0.18	-0.1
1,860,655	-		LRK54_RS08530	0.18	-2.1
1,860,655	-		LRK54_RS08530	0.18	-1.2
1,860,655	-		LRK54_RS08530	0.18	-2.1
1,860,655	-		LRK54_RS08530	0.18	-0.2
1,860,655	-		LRK54_RS08530	0.18	+0.2
1,860,655	-		LRK54_RS08530	0.18	-0.4
1,860,655	-		LRK54_RS08530	0.18	+0.9
1,860,655	-		LRK54_RS08530	0.18	-0.9
1,860,655	-		LRK54_RS08530	0.18	+1.8
1,860,655	-		LRK54_RS08530	0.18	+3.7
1,860,705	+		LRK54_RS08530	0.22	-0.1
1,860,705	+		LRK54_RS08530	0.22	-0.6
1,860,705	+		LRK54_RS08530	0.22	+0.4
1,860,705	+		LRK54_RS08530	0.22	-1.2
1,860,705	+		LRK54_RS08530	0.22	-0.3
1,860,705	+		LRK54_RS08530	0.22	+0.3
1,860,705	+		LRK54_RS08530	0.22	-2.9
1,860,705	+		LRK54_RS08530	0.22	-1.4
1,860,705	+		LRK54_RS08530	0.22	+0.8
1,860,705	+		LRK54_RS08530	0.22	-0.6
1,860,705	+		LRK54_RS08530	0.22	-2.9
1,860,705	+		LRK54_RS08530	0.22	+0.5
1,860,705	+		LRK54_RS08530	0.22	-2.0
1,860,705	+		LRK54_RS08530	0.22	+0.3
1,860,705	+		LRK54_RS08530	0.22	+0.0
1,860,705	+		LRK54_RS08530	0.22	+0.6
1,860,705	+		LRK54_RS08530	0.22	+0.2
1,860,705	+		LRK54_RS08530	0.22	-0.9
1,860,705	+		LRK54_RS08530	0.22	+1.7
1,860,705	+		LRK54_RS08530	0.22	+0.5
1,860,705	+		LRK54_RS08530	0.22	-0.8
1,860,705	+		LRK54_RS08530	0.22	-1.3
1,860,705	+		LRK54_RS08530	0.22	-0.1
1,860,706	-		LRK54_RS08530	0.22	-1.3
1,860,706	-		LRK54_RS08530	0.22	-1.0
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1,860,706	-		LRK54_RS08530	0.22	+1.8
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1,860,706	-		LRK54_RS08530	0.22	-0.3
1,860,706	-		LRK54_RS08530	0.22	-1.3
1,860,706	-		LRK54_RS08530	0.22	-2.4
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1,860,706	-		LRK54_RS08530	0.22	-1.9
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1,860,706	-		LRK54_RS08530	0.22	+1.9
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1,860,706	-		LRK54_RS08530	0.22	+1.1
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1,861,353	+		LRK54_RS08530	0.82	-0.5
1,861,354	-		LRK54_RS08530	0.82	-0.5