Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08240

Experiment: R2A with silver chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with silver chloride 1 mM
1,799,105	+		LRK54_RS08230	0.52	-0.9
1,799,105	+		LRK54_RS08230	0.52	-1.4
1,799,106	-		LRK54_RS08230	0.52	-0.2
1,799,106	-		LRK54_RS08230	0.52	-0.6
1,799,106	-		LRK54_RS08230	0.52	-0.6
1,799,106	-		LRK54_RS08230	0.52	+1.9
1,799,106	-		LRK54_RS08230	0.52	-0.6
1,799,845	+		LRK54_RS08240	0.22	-2.3
1,799,845	+		LRK54_RS08240	0.22	-0.3
1,799,845	+		LRK54_RS08240	0.22	-0.6
1,799,845	+		LRK54_RS08240	0.22	-1.8
1,799,845	+		LRK54_RS08240	0.22	-0.2
1,799,845	+		LRK54_RS08240	0.22	-1.2
1,799,845	+		LRK54_RS08240	0.22	-2.7
1,799,845	+		LRK54_RS08240	0.22	-2.9
1,799,845	+		LRK54_RS08240	0.22	-0.8
1,799,845	+		LRK54_RS08240	0.22	-1.0
1,799,846	-		LRK54_RS08240	0.22	+0.8
1,799,846	-		LRK54_RS08240	0.22	-0.5
1,799,846	-		LRK54_RS08240	0.22	-0.9
1,799,846	-		LRK54_RS08240	0.22	-0.8
1,799,846	-		LRK54_RS08240	0.22	-1.2
1,799,853	+		LRK54_RS08240	0.24	-2.1
1,799,853	+		LRK54_RS08240	0.24	-0.6
1,799,853	+		LRK54_RS08240	0.24	-0.2
1,799,853	+		LRK54_RS08240	0.24	-2.7
1,799,854	-		LRK54_RS08240	0.24	-1.0
1,799,854	-		LRK54_RS08240	0.24	-1.8
1,799,854	-		LRK54_RS08240	0.24	-2.1
1,799,854	-		LRK54_RS08240	0.24	-1.2
1,799,854	-		LRK54_RS08240	0.24	+0.3
1,799,854	-		LRK54_RS08240	0.24	+0.5
1,799,854	-		LRK54_RS08240	0.24	-0.2
1,799,896	+		LRK54_RS08240	0.36	-0.9
1,799,896	+		LRK54_RS08240	0.36	-2.1
1,799,896	+		LRK54_RS08240	0.36	+1.8
1,799,896	+		LRK54_RS08240	0.36	+0.8
1,799,896	+		LRK54_RS08240	0.36	-1.3
1,799,896	+		LRK54_RS08240	0.36	+0.5
1,799,896	+		LRK54_RS08240	0.36	-0.2
1,799,896	+		LRK54_RS08240	0.36	-4.2
1,799,896	+		LRK54_RS08240	0.36	-0.8
1,799,897	-		LRK54_RS08240	0.36	-0.3
1,799,897	-		LRK54_RS08240	0.36	+1.0
1,799,897	-		LRK54_RS08240	0.36	-2.0
1,799,897	-		LRK54_RS08240	0.36	-1.0
1,799,897	-		LRK54_RS08240	0.36	-0.2
1,799,897	-		LRK54_RS08240	0.36	-1.1
1,799,897	-		LRK54_RS08240	0.36	-1.7
1,799,897	-		LRK54_RS08240	0.36	-2.9
1,799,897	-		LRK54_RS08240	0.36	-2.0
1,799,897	-		LRK54_RS08240	0.36	-2.1
1,800,328	+				-0.1
1,800,328	+				+0.6
1,800,328	+				+0.5
1,800,328	+				-1.8
1,800,329	-				+1.7
1,800,329	-				-0.4
1,800,329	-				-1.1
1,800,384	+				-1.8
1,800,384	+				+1.6
1,800,384	+				-0.6
1,800,384	+				-1.0
1,800,384	+				+0.3
1,800,384	+				-1.6
1,800,384	+				-3.3
1,800,384	+				-0.1
1,800,385	-				-0.6
1,800,385	-				+1.0
1,800,385	-				-1.0
1,800,385	-				-0.8
1,800,385	-				+0.3
1,800,385	-				-1.3
1,800,385	-				-0.5
1,800,385	-				-0.3
1,800,385	-				+0.3
1,800,385	-				-2.0
1,800,538	+				-0.4
1,800,538	+				+2.3
1,800,538	+				-0.6
1,800,538	+				-1.0
1,800,538	+				+1.0
1,800,538	+				-1.3
1,800,538	+				-0.8
1,800,538	+				+0.0
1,800,538	+				+0.1
1,800,539	-				+0.8
1,800,539	-				-0.2
1,800,539	-				+0.3
1,800,539	-				-0.6
1,800,539	-				-0.1
1,800,539	-				+0.5
1,800,539	-				+0.4
1,800,539	-				+2.0
1,800,539	-				-0.6
1,800,539	-				+1.2
1,800,661	+		LRK54_RS08250	0.24	-1.0
1,800,661	+		LRK54_RS08250	0.24	+1.5
1,800,661	+		LRK54_RS08250	0.24	-1.2
1,800,661	+		LRK54_RS08250	0.24	+0.4
1,800,661	+		LRK54_RS08250	0.24	-0.2
1,800,662	-		LRK54_RS08250	0.24	+0.9
1,800,662	-		LRK54_RS08250	0.24	-0.5
1,800,662	-		LRK54_RS08250	0.24	+0.2
1,800,707	-		LRK54_RS08250	0.32	-0.9
1,800,715	+		LRK54_RS08250	0.33	+0.3
1,800,715	+		LRK54_RS08250	0.33	+0.2
1,800,757	+		LRK54_RS08250	0.40	+2.4
1,800,757	+		LRK54_RS08250	0.40	+1.8
1,800,758	-		LRK54_RS08250	0.40	+0.0
1,800,758	-		LRK54_RS08250	0.40	-1.9
1,800,758	-		LRK54_RS08250	0.40	-0.6
1,800,758	-		LRK54_RS08250	0.40	-0.1