Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05260

Experiment: R2A with silver chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with silver chloride 1 mM
1,126,741	-		LRK54_RS05255	0.59	+0.3
1,126,836	+		LRK54_RS05255	0.66	-0.7
1,126,836	+		LRK54_RS05255	0.66	-2.0
1,126,836	+		LRK54_RS05255	0.66	+0.5
1,126,836	+		LRK54_RS05255	0.66	-2.2
1,126,836	+		LRK54_RS05255	0.66	-0.7
1,126,836	+		LRK54_RS05255	0.66	-0.6
1,126,836	+		LRK54_RS05255	0.66	-0.2
1,126,836	+		LRK54_RS05255	0.66	-0.4
1,126,836	+		LRK54_RS05255	0.66	+0.8
1,126,836	+		LRK54_RS05255	0.66	+0.2
1,126,837	-		LRK54_RS05255	0.66	-2.1
1,126,837	-		LRK54_RS05255	0.66	-0.2
1,126,837	-		LRK54_RS05255	0.66	-0.9
1,126,837	-		LRK54_RS05255	0.66	-0.4
1,126,837	-		LRK54_RS05255	0.66	+0.9
1,126,837	-		LRK54_RS05255	0.66	-0.3
1,126,837	-		LRK54_RS05255	0.66	-1.8
1,126,837	-		LRK54_RS05255	0.66	-0.1
1,126,837	-		LRK54_RS05255	0.66	-3.1
1,126,839	+		LRK54_RS05255	0.66	-1.7
1,126,839	+		LRK54_RS05255	0.66	-2.8
1,126,839	+		LRK54_RS05255	0.66	-1.1
1,126,839	+		LRK54_RS05255	0.66	-1.2
1,126,839	+		LRK54_RS05255	0.66	-0.7
1,126,839	+		LRK54_RS05255	0.66	-2.5
1,126,839	+		LRK54_RS05255	0.66	-1.7
1,126,839	+		LRK54_RS05255	0.66	-1.4
1,126,839	+		LRK54_RS05255	0.66	-0.4
1,126,839	+		LRK54_RS05255	0.66	+0.5
1,126,839	+		LRK54_RS05255	0.66	-0.0
1,126,839	+		LRK54_RS05255	0.66	-0.4
1,126,839	+		LRK54_RS05255	0.66	-0.9
1,126,840	-		LRK54_RS05255	0.66	-0.1
1,126,840	-		LRK54_RS05255	0.66	-0.4
1,126,840	-		LRK54_RS05255	0.66	-0.9
1,126,840	-		LRK54_RS05255	0.66	-0.1
1,126,840	-		LRK54_RS05255	0.66	-2.1
1,126,840	-		LRK54_RS05255	0.66	-2.0
1,126,840	-		LRK54_RS05255	0.66	-0.5
1,126,840	-		LRK54_RS05255	0.66	-0.1
1,126,840	-		LRK54_RS05255	0.66	-0.7
1,126,840	-		LRK54_RS05255	0.66	+0.3
1,126,840	-		LRK54_RS05255	0.66	+0.6
1,126,840	-		LRK54_RS05255	0.66	-1.5
1,126,840	-		LRK54_RS05255	0.66	+0.1
1,126,885	-		LRK54_RS05255	0.69	-2.8
1,126,885	-		LRK54_RS05255	0.69	-0.4
1,126,885	-		LRK54_RS05255	0.69	-1.5
1,126,917	+		LRK54_RS05255	0.72	-1.4
1,126,917	+		LRK54_RS05255	0.72	+1.3
1,126,917	+		LRK54_RS05255	0.72	-1.2
1,126,917	+		LRK54_RS05255	0.72	-0.9
1,126,917	+		LRK54_RS05255	0.72	-1.4
1,126,917	+		LRK54_RS05255	0.72	-3.3
1,126,917	+		LRK54_RS05255	0.72	-0.7
1,126,917	+		LRK54_RS05255	0.72	-3.5
1,126,917	+		LRK54_RS05255	0.72	-1.5
1,126,918	-		LRK54_RS05255	0.72	-1.2
1,126,918	-		LRK54_RS05255	0.72	-0.2
1,126,918	-		LRK54_RS05255	0.72	-2.9
1,126,918	-		LRK54_RS05255	0.72	+0.1
1,126,918	-		LRK54_RS05255	0.72	-0.1
1,126,918	-		LRK54_RS05255	0.72	-0.4
1,126,918	-		LRK54_RS05255	0.72	-2.4
1,126,918	-		LRK54_RS05255	0.72	-1.9
1,126,918	-		LRK54_RS05255	0.72	-0.7
1,126,918	-		LRK54_RS05255	0.72	-0.5
1,126,918	-		LRK54_RS05255	0.72	-2.4
1,126,918	-		LRK54_RS05255	0.72	-1.8
1,126,918	-		LRK54_RS05255	0.72	-0.7
1,126,918	-		LRK54_RS05255	0.72	-0.9
1,126,918	-		LRK54_RS05255	0.72	-1.9
1,126,918	-		LRK54_RS05255	0.72	-1.2
1,126,918	-		LRK54_RS05255	0.72	-1.7
1,126,918	-		LRK54_RS05255	0.72	-1.5
1,127,256	+				+0.9
1,127,256	+				-0.1
1,127,256	+				-3.1
1,127,256	+				-2.3
1,127,256	+				-0.4
1,127,256	+				-0.9
1,127,256	+				-1.3
1,127,256	+				-0.6
1,127,256	+				+0.7
1,127,256	+				-2.2
1,127,256	+				-0.1
1,127,256	+				-0.0
1,127,256	+				-1.8
1,127,256	+				-2.5
1,127,256	+				-0.3
1,127,257	-				+0.3
1,127,257	-				-3.0
1,127,257	-				-1.4
1,127,257	-				-1.5
1,127,257	-				-0.7
1,127,257	-				-2.1
1,127,257	-				-2.2
1,127,257	-				-0.1
1,127,257	-				-0.4
1,127,332	+				+1.1
1,127,395	+				+0.7
1,127,396	-				-0.4
1,127,396	-				-0.6
1,127,396	-				-0.9
1,127,396	-				-0.1
1,127,544	+		LRK54_RS05260	0.28	+1.1
1,127,544	+		LRK54_RS05260	0.28	+0.1
1,127,544	+		LRK54_RS05260	0.28	-1.2
1,127,544	+		LRK54_RS05260	0.28	+0.2
1,127,544	+		LRK54_RS05260	0.28	-0.7
1,127,544	+		LRK54_RS05260	0.28	-1.5
1,127,545	-		LRK54_RS05260	0.29	-1.1
1,127,545	-		LRK54_RS05260	0.29	-0.2
1,127,545	-		LRK54_RS05260	0.29	+0.5
1,127,545	-		LRK54_RS05260	0.29	+1.2
1,127,545	-		LRK54_RS05260	0.29	-0.4
1,127,545	-		LRK54_RS05260	0.29	-1.2
1,127,545	-		LRK54_RS05260	0.29	-1.8
1,127,548	+		LRK54_RS05260	0.29	+0.4
1,127,548	+		LRK54_RS05260	0.29	-1.1
1,127,549	-		LRK54_RS05260	0.30	-1.7
1,127,549	-		LRK54_RS05260	0.30	-1.0
1,127,571	+		LRK54_RS05260	0.34	-0.1
1,127,572	-		LRK54_RS05260	0.35	+0.6
1,127,572	-		LRK54_RS05260	0.35	+0.9
1,127,572	-		LRK54_RS05260	0.35	+0.3
1,127,572	-		LRK54_RS05260	0.35	-0.6
1,127,877	-				+2.5
1,127,877	-				-0.3
1,127,877	-				-0.9
1,127,940	+				-0.7
1,128,181	+				-2.8
1,128,181	+				-0.1
1,128,181	+				+1.9
1,128,181	+				-1.2
1,128,182	+				+1.5
1,128,182	-				-1.0
1,128,182	-				-1.9
1,128,182	-				-1.6
1,128,182	-				+1.9
1,128,182	-				+1.9
1,128,265	+				+0.2
1,128,265	+				+0.9
1,128,265	+				-1.2
1,128,265	+				+0.3
1,128,265	+				-0.9
1,128,265	+				+1.9
1,128,265	+				-1.7
1,128,265	+				-1.1
1,128,265	+				+0.3
1,128,265	+				+0.5
1,128,265	+				-0.2
1,128,265	+				-0.1
1,128,265	+				-0.7
1,128,266	-				-0.3
1,128,266	-				-0.4
1,128,266	-				-0.7
1,128,266	-				-0.0
1,128,266	-				-0.5
1,128,266	-				+0.0
1,128,266	-				-0.4
1,128,266	-				+5.1
1,128,266	-				-1.5
1,128,266	-				-1.8
1,128,298	+		LRK54_RS05265	0.11	+0.8
1,128,375	+		LRK54_RS05265	0.15	+0.9
1,128,375	+		LRK54_RS05265	0.15	-0.4
1,128,400	+		LRK54_RS05265	0.17	-3.2
1,128,400	+		LRK54_RS05265	0.17	+0.3
1,128,400	+		LRK54_RS05265	0.17	-1.0
1,128,400	+		LRK54_RS05265	0.17	+1.6
1,128,401	-		LRK54_RS05265	0.17	-1.4
1,128,401	-		LRK54_RS05265	0.17	+0.3
1,128,401	-		LRK54_RS05265	0.17	+0.7
1,128,443	+		LRK54_RS05265	0.19	-1.1
1,128,443	+		LRK54_RS05265	0.19	-0.4
1,128,444	-		LRK54_RS05265	0.19	-0.9
1,128,466	+		LRK54_RS05265	0.20	+2.7
1,128,466	+		LRK54_RS05265	0.20	-2.3
1,128,466	+		LRK54_RS05265	0.20	+0.3
1,128,466	+		LRK54_RS05265	0.20	-0.1
1,128,466	+		LRK54_RS05265	0.20	-1.4
1,128,466	+		LRK54_RS05265	0.20	-2.7
1,128,466	+		LRK54_RS05265	0.20	-1.7
1,128,466	+		LRK54_RS05265	0.20	-0.3
1,128,466	+		LRK54_RS05265	0.20	-1.7
1,128,466	+		LRK54_RS05265	0.20	-1.5
1,128,466	+		LRK54_RS05265	0.20	+0.6
1,128,466	+		LRK54_RS05265	0.20	-0.4
1,128,466	+		LRK54_RS05265	0.20	+0.1
1,128,466	+		LRK54_RS05265	0.20	-1.5
1,128,467	-		LRK54_RS05265	0.20	-0.1
1,128,467	-		LRK54_RS05265	0.20	+0.4
1,128,467	-		LRK54_RS05265	0.20	-1.4
1,128,467	-		LRK54_RS05265	0.20	-0.5
1,128,467	-		LRK54_RS05265	0.20	-1.1
1,128,467	-		LRK54_RS05265	0.20	-2.1
1,128,467	-		LRK54_RS05265	0.20	-1.8
1,128,467	-		LRK54_RS05265	0.20	-0.3
1,128,467	-		LRK54_RS05265	0.20	-0.7
1,128,467	-		LRK54_RS05265	0.20	-0.9
1,128,467	-		LRK54_RS05265	0.20	-0.1
1,128,467	-		LRK54_RS05265	0.20	-2.3
1,128,467	-		LRK54_RS05265	0.20	-0.9
1,128,488	+		LRK54_RS05265	0.21	-0.8
1,128,496	+		LRK54_RS05265	0.22	-1.7
1,128,497	-		LRK54_RS05265	0.22	-2.2
1,128,497	-		LRK54_RS05265	0.22	-1.1
1,128,497	-		LRK54_RS05265	0.22	-0.7
1,128,613	-		LRK54_RS05265	0.28	-0.3
1,128,679	+		LRK54_RS05265	0.31	+0.6
1,128,679	+		LRK54_RS05265	0.31	-1.5
1,128,679	+		LRK54_RS05265	0.31	-1.3
1,128,680	-		LRK54_RS05265	0.31	+0.9
1,128,680	-		LRK54_RS05265	0.31	-1.5
1,128,680	-		LRK54_RS05265	0.31	+0.1
1,128,680	-		LRK54_RS05265	0.31	-1.5
1,128,683	+		LRK54_RS05265	0.31	+1.3
1,128,683	+		LRK54_RS05265	0.31	+0.2
1,128,683	+		LRK54_RS05265	0.31	-2.0
1,128,683	+		LRK54_RS05265	0.31	-0.1
1,128,683	+		LRK54_RS05265	0.31	-1.1
1,128,684	-		LRK54_RS05265	0.31	-0.1
1,128,684	-		LRK54_RS05265	0.31	+0.9
1,128,834	+		LRK54_RS05265	0.39	-2.3
1,128,835	-		LRK54_RS05265	0.39	-1.5