Strain Fitness in Pantoea sp. MT58 around IAI47_15340

Experiment: nitrogen source Ammonium chloride 20mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source Ammonium chloride 20mM
3,229,949	-				-0.0
3,229,949	-				+0.3
3,229,955	+				-0.5
3,229,955	+				-0.8
3,229,955	+				-1.3
3,230,029	-		IAI47_15335	0.10	+1.1
3,230,029	-		IAI47_15335	0.10	+0.3
3,230,076	+		IAI47_15335	0.17	+0.7
3,230,077	-		IAI47_15335	0.17	+0.3
3,230,091	+		IAI47_15335	0.19	+0.5
3,230,091	+		IAI47_15335	0.19	-1.8
3,230,091	+		IAI47_15335	0.19	+0.9
3,230,091	+		IAI47_15335	0.19	+0.2
3,230,092	-		IAI47_15335	0.19	-0.0
3,230,113	+		IAI47_15335	0.22	+0.3
3,230,189	+		IAI47_15335	0.32	+0.9
3,230,189	+		IAI47_15335	0.32	-0.1
3,230,189	+		IAI47_15335	0.32	-0.4
3,230,189	+		IAI47_15335	0.32	+0.9
3,230,189	+		IAI47_15335	0.32	+1.6
3,230,190	-		IAI47_15335	0.32	+1.9
3,230,264	-		IAI47_15335	0.42	-0.8
3,230,264	-		IAI47_15335	0.42	-0.4
3,230,307	+		IAI47_15335	0.48	+0.1
3,230,308	-		IAI47_15335	0.48	-2.0
3,230,308	-		IAI47_15335	0.48	+0.2
3,230,308	-		IAI47_15335	0.48	+1.1
3,230,365	+		IAI47_15335	0.56	-0.2
3,230,397	+		IAI47_15335	0.60	-0.4
3,230,398	-		IAI47_15335	0.60	-0.0
3,230,398	-		IAI47_15335	0.60	+1.4
3,230,398	-		IAI47_15335	0.60	-2.7
3,230,482	-		IAI47_15335	0.72	+1.3
3,230,482	-		IAI47_15335	0.72	-1.4
3,230,508	+		IAI47_15335	0.75	+0.9
3,230,509	-		IAI47_15335	0.75	-0.8
3,230,509	-		IAI47_15335	0.75	+1.3
3,230,509	-		IAI47_15335	0.75	+1.5
3,230,553	+		IAI47_15335	0.81	+0.3
3,230,553	+		IAI47_15335	0.81	-0.6
3,230,553	+		IAI47_15335	0.81	-0.1
3,230,553	+		IAI47_15335	0.81	-1.0
3,230,553	+		IAI47_15335	0.81	-0.1
3,230,553	+		IAI47_15335	0.81	+0.7
3,230,553	+		IAI47_15335	0.81	+3.0
3,230,553	+		IAI47_15335	0.81	+0.2
3,230,553	+		IAI47_15335	0.81	+0.9
3,230,554	-		IAI47_15335	0.81	-0.8
3,230,554	-		IAI47_15335	0.81	-1.0
3,230,554	-		IAI47_15335	0.81	+0.6
3,230,554	-		IAI47_15335	0.81	+0.4
3,230,559	+		IAI47_15335	0.82	+0.1
3,230,559	+		IAI47_15335	0.82	+0.2
3,230,559	+		IAI47_15335	0.82	+0.2
3,230,559	+		IAI47_15335	0.82	+0.1
3,230,560	-		IAI47_15335	0.82	+0.1
3,230,560	-		IAI47_15335	0.82	+1.3
3,230,560	-		IAI47_15335	0.82	+0.6
3,230,560	-		IAI47_15335	0.82	-1.1
3,230,570	+		IAI47_15335	0.83	-0.3
3,230,571	-		IAI47_15335	0.84	-0.3
3,230,572	+		IAI47_15335	0.84	+3.3
3,230,572	+		IAI47_15335	0.84	+0.6
3,230,572	+		IAI47_15335	0.84	-0.8
3,230,572	+		IAI47_15335	0.84	-1.5
3,230,573	-		IAI47_15335	0.84	-0.0
3,230,573	-		IAI47_15335	0.84	-2.1
3,230,573	-		IAI47_15335	0.84	+0.5
3,230,573	-		IAI47_15335	0.84	-0.2
3,230,573	-		IAI47_15335	0.84	-1.3
3,230,585	+		IAI47_15335	0.86	+1.0
3,230,585	+		IAI47_15335	0.86	+0.5
3,230,586	-		IAI47_15335	0.86	-0.0
3,230,586	-		IAI47_15335	0.86	+0.1
3,230,621	+				+1.6
3,230,679	+				+0.6
3,230,696	+				-2.6
3,230,696	+				+0.2
3,230,696	+				+0.7
3,230,696	+				+1.3
3,230,697	-				-1.6
3,230,710	+				-0.4
3,230,710	+				+0.5
3,230,714	-				-0.0
3,230,742	+				-3.1
3,230,742	+				-1.7
3,230,743	-				-2.3
3,230,743	-				-1.7
3,230,748	+				-3.0
3,230,748	+				-3.0
3,230,749	-				-2.3
3,230,749	-				+0.5
3,230,770	+				-2.1
3,230,770	+				-2.8
3,230,770	+				-3.4
3,230,770	+				+0.4
3,230,770	+				-0.7
3,230,770	+				-4.0
3,230,770	+				-3.2
3,230,770	+				+1.0
3,230,770	+				-0.8
3,230,770	+				-0.1
3,230,770	+				-0.4
3,230,770	+				-1.0
3,230,771	-				-3.1
3,230,771	-				-2.3
3,230,771	-				-2.3
3,230,771	-				-1.8
3,230,771	-				-1.9
3,230,771	-				-2.1
3,230,771	-				-0.9
3,230,771	-				-3.7
3,230,771	-				-1.3
3,230,771	-				-0.8
3,230,799	+				-2.8
3,230,799	+				-2.2
3,230,799	+				-2.7
3,230,800	-				-3.6
3,230,800	-				-2.6
3,230,800	-				-1.2
3,230,800	-				-3.5
3,230,800	-				-1.5
3,230,840	+		IAI47_15340	0.14	-0.4
3,230,898	+		IAI47_15340	0.22	-1.6
3,230,898	+		IAI47_15340	0.22	-2.5
3,230,899	-		IAI47_15340	0.22	-1.3
3,230,899	-		IAI47_15340	0.22	-1.4
3,230,899	-		IAI47_15340	0.22	-2.0
3,230,899	-		IAI47_15340	0.22	+0.2
3,230,956	+		IAI47_15340	0.29	-1.7
3,230,957	-		IAI47_15340	0.29	-2.0
3,230,957	-		IAI47_15340	0.29	-0.7
3,230,957	-		IAI47_15340	0.29	-2.1
3,230,957	-		IAI47_15340	0.29	-0.4
3,230,957	-		IAI47_15340	0.29	+0.7
3,230,957	-		IAI47_15340	0.29	-2.6
3,231,013	-		IAI47_15340	0.37	-1.3
3,231,013	-		IAI47_15340	0.37	-1.7
3,231,052	-		IAI47_15340	0.42	-3.3
3,231,068	+		IAI47_15340	0.44	-1.4
3,231,069	-		IAI47_15340	0.44	-1.3
3,231,075	+		IAI47_15340	0.45	+1.2
3,231,075	+		IAI47_15340	0.45	+0.4
3,231,075	+		IAI47_15340	0.45	-2.5
3,231,075	+		IAI47_15340	0.45	+0.2
3,231,075	+		IAI47_15340	0.45	-3.1
3,231,075	+		IAI47_15340	0.45	-1.1
3,231,076	-		IAI47_15340	0.45	-0.5
3,231,077	+		IAI47_15340	0.45	-1.3
3,231,085	+		IAI47_15340	0.46	-1.0
3,231,169	+		IAI47_15340	0.58	-1.2
3,231,170	-		IAI47_15340	0.58	-0.7
3,231,190	-		IAI47_15340	0.60	-1.4
3,231,212	+		IAI47_15340	0.63	-2.7
3,231,234	+		IAI47_15340	0.66	-3.0
3,231,235	-		IAI47_15340	0.66	-4.0
3,231,240	-		IAI47_15340	0.67	-1.4
3,231,265	-		IAI47_15340	0.70	-2.3
3,231,288	-		IAI47_15340	0.73	-0.7
3,231,310	-		IAI47_15340	0.76	-3.3
3,231,317	+		IAI47_15340	0.77	-1.4
3,231,337	-		IAI47_15340	0.80	-1.0
3,231,348	-		IAI47_15340	0.81	+1.6
3,231,450	+				-0.3
3,231,451	-				-1.5
3,231,522	+				-0.3
3,231,522	+				+0.8
3,231,522	+				-0.3
3,231,523	-				+0.2
3,231,523	-				-0.4
3,231,524	+				+0.3
3,231,524	+				+1.2
3,231,524	+				-1.0
3,231,525	-				-2.1
3,231,525	-				+0.2
3,231,525	-				+2.7
3,231,525	-				+0.5
3,231,539	+				-0.8
3,231,548	+				+1.7
3,231,549	-				+0.3
3,231,549	-				-1.6
3,231,560	+				+1.1
3,231,560	+				+1.3
3,231,560	+				+0.2
3,231,560	+				+1.0
3,231,560	+				-1.3
3,231,560	+				+0.9
3,231,560	+				-0.1
3,231,560	+				-0.5
3,231,560	+				+0.7
3,231,560	+				-0.0
3,231,560	+				-0.0
3,231,560	+				-1.2
3,231,560	+				-0.5
3,231,560	+				+0.4
3,231,560	+				+0.6
3,231,561	-				+2.5
3,231,561	-				-1.3
3,231,561	-				-0.1
3,231,561	-				-0.6
3,231,561	-				+0.9
3,231,561	-				+0.7
3,231,561	-				+1.2
3,231,561	-				-0.6
3,231,561	-				+0.9
3,231,561	-				+0.7
3,231,561	-				-0.6
3,231,561	-				+0.7
3,231,561	-				+0.4
3,231,561	-				-0.0
3,231,561	-				+0.6
3,231,561	-				-1.3
3,231,561	-				+0.6
3,231,569	+				+2.5
3,231,569	+				+0.9
3,231,569	+				+0.1
3,231,577	+				-1.8
3,231,577	+				+0.1
3,231,577	+				+0.7
3,231,580	+				+1.3
3,231,581	-				-1.1
3,231,849	+		IAI47_15345	0.21	+0.5
3,231,849	+		IAI47_15345	0.21	+0.6
3,231,849	+		IAI47_15345	0.21	-0.4
3,231,849	+		IAI47_15345	0.21	+0.4
3,231,849	+		IAI47_15345	0.21	-0.7
3,231,850	-		IAI47_15345	0.21	-0.3
3,231,862	+		IAI47_15345	0.22	+1.3
3,231,862	+		IAI47_15345	0.22	+0.2
3,231,862	+		IAI47_15345	0.22	-0.1
3,231,862	+		IAI47_15345	0.22	+0.5
3,231,863	-		IAI47_15345	0.22	+1.4
3,231,868	+		IAI47_15345	0.22	+0.8
3,231,882	+		IAI47_15345	0.23	-0.4
3,231,882	+		IAI47_15345	0.23	-1.5
3,231,882	+		IAI47_15345	0.23	+0.0
3,231,882	+		IAI47_15345	0.23	-1.1
3,231,882	+		IAI47_15345	0.23	+0.0
3,231,882	+		IAI47_15345	0.23	+0.6
3,231,882	+		IAI47_15345	0.23	-1.3
3,231,882	+		IAI47_15345	0.23	+1.3
3,231,882	+		IAI47_15345	0.23	-0.6
3,231,882	+		IAI47_15345	0.23	+0.3
3,231,883	-		IAI47_15345	0.23	-1.3
3,231,883	-		IAI47_15345	0.23	+0.7
3,231,883	-		IAI47_15345	0.23	+1.1
3,231,883	-		IAI47_15345	0.23	+0.5
3,231,883	-		IAI47_15345	0.23	+1.6
3,231,883	-		IAI47_15345	0.23	+1.6
3,231,883	-		IAI47_15345	0.23	-2.0
3,231,883	-		IAI47_15345	0.23	-0.1
3,231,883	-		IAI47_15345	0.23	+0.4
3,231,888	+		IAI47_15345	0.24	+0.1
3,231,888	+		IAI47_15345	0.24	-0.0
3,231,888	+		IAI47_15345	0.24	+1.7
3,231,888	+		IAI47_15345	0.24	+0.5
3,231,888	+		IAI47_15345	0.24	+0.6
3,231,888	+		IAI47_15345	0.24	+1.3
3,231,888	+		IAI47_15345	0.24	-0.6
3,231,889	-		IAI47_15345	0.24	+0.0
3,231,889	-		IAI47_15345	0.24	+0.7
3,231,889	-		IAI47_15345	0.24	-0.7
3,231,908	-		IAI47_15345	0.25	+0.7
3,231,918	-		IAI47_15345	0.26	+1.0
3,231,937	+		IAI47_15345	0.27	+1.9
3,231,938	-		IAI47_15345	0.27	+0.6
3,231,943	+		IAI47_15345	0.28	+1.1
3,231,943	+		IAI47_15345	0.28	+1.0
3,231,944	-		IAI47_15345	0.28	-0.8
3,231,949	+		IAI47_15345	0.28	+0.4
3,231,949	+		IAI47_15345	0.28	+1.0
3,231,949	+		IAI47_15345	0.28	+0.4
3,231,949	+		IAI47_15345	0.28	-0.4
3,231,949	+		IAI47_15345	0.28	-0.4
3,231,949	+		IAI47_15345	0.28	-0.3
3,231,950	-		IAI47_15345	0.28	+1.1
3,232,036	-		IAI47_15345	0.34	+1.7
3,232,036	-		IAI47_15345	0.34	-1.3
3,232,036	-		IAI47_15345	0.34	+0.4
3,232,036	-		IAI47_15345	0.34	+1.4
3,232,059	+		IAI47_15345	0.36	-0.6
3,232,059	+		IAI47_15345	0.36	+0.5
3,232,059	+		IAI47_15345	0.36	+1.7
3,232,059	+		IAI47_15345	0.36	+1.8
3,232,059	+		IAI47_15345	0.36	+0.1
3,232,059	+		IAI47_15345	0.36	+0.5
3,232,060	-		IAI47_15345	0.36	+1.0
3,232,060	-		IAI47_15345	0.36	+0.2
3,232,060	-		IAI47_15345	0.36	+1.8
3,232,060	-		IAI47_15345	0.36	-0.7
3,232,060	-		IAI47_15345	0.36	+1.6
3,232,060	-		IAI47_15345	0.36	+1.9
3,232,060	-		IAI47_15345	0.36	+0.8
3,232,107	-		IAI47_15345	0.40	-0.8
3,232,107	-		IAI47_15345	0.40	-0.9
3,232,107	-		IAI47_15345	0.40	+0.6
3,232,121	+		IAI47_15345	0.41	+0.3
3,232,121	+		IAI47_15345	0.41	+0.5
3,232,121	+		IAI47_15345	0.41	-0.3
3,232,121	+		IAI47_15345	0.41	+2.1
3,232,121	+		IAI47_15345	0.41	+0.8
3,232,121	+		IAI47_15345	0.41	-0.3
3,232,122	-		IAI47_15345	0.41	-0.4
3,232,122	-		IAI47_15345	0.41	-0.2
3,232,122	-		IAI47_15345	0.41	+0.3
3,232,122	-		IAI47_15345	0.41	-0.1
3,232,122	-		IAI47_15345	0.41	+0.3
3,232,122	-		IAI47_15345	0.41	+0.9
3,232,127	+		IAI47_15345	0.41	-0.1
3,232,127	+		IAI47_15345	0.41	+1.0
3,232,127	+		IAI47_15345	0.41	-0.8
3,232,127	+		IAI47_15345	0.41	+0.2
3,232,127	+		IAI47_15345	0.41	+0.1
3,232,127	+		IAI47_15345	0.41	+1.4
3,232,127	+		IAI47_15345	0.41	+0.2
3,232,127	+		IAI47_15345	0.41	+1.2
3,232,127	+		IAI47_15345	0.41	+0.8
3,232,127	+		IAI47_15345	0.41	-0.1
3,232,127	+		IAI47_15345	0.41	+0.5
3,232,128	-		IAI47_15345	0.41	+0.5
3,232,128	-		IAI47_15345	0.41	-0.7
3,232,128	-		IAI47_15345	0.41	-1.6
3,232,128	-		IAI47_15345	0.41	+1.2
3,232,128	-		IAI47_15345	0.41	-0.6
3,232,128	-		IAI47_15345	0.41	-0.9
3,232,128	-		IAI47_15345	0.41	+0.7
3,232,147	+		IAI47_15345	0.43	+0.9
3,232,147	+		IAI47_15345	0.43	-0.4
3,232,147	+		IAI47_15345	0.43	+1.1
3,232,148	-		IAI47_15345	0.43	-0.7
3,232,148	-		IAI47_15345	0.43	+1.3
3,232,164	+		IAI47_15345	0.44	+0.5
3,232,164	+		IAI47_15345	0.44	+1.1
3,232,164	+		IAI47_15345	0.44	-1.1
3,232,164	+		IAI47_15345	0.44	+1.1
3,232,164	+		IAI47_15345	0.44	-1.1
3,232,164	+		IAI47_15345	0.44	+0.2
3,232,165	-		IAI47_15345	0.44	-0.7
3,232,165	-		IAI47_15345	0.44	-0.1
3,232,166	+		IAI47_15345	0.44	+0.6
3,232,166	+		IAI47_15345	0.44	+2.0
3,232,166	+		IAI47_15345	0.44	-0.1
3,232,167	-		IAI47_15345	0.44	+0.0
3,232,190	+		IAI47_15345	0.46	-0.8
3,232,190	+		IAI47_15345	0.46	+0.2
3,232,191	-		IAI47_15345	0.46	+0.2
3,232,191	-		IAI47_15345	0.46	+0.5
3,232,199	+		IAI47_15345	0.46	-0.4
3,232,243	+		IAI47_15345	0.50	-0.2
3,232,269	+		IAI47_15345	0.51	+0.5
3,232,269	+		IAI47_15345	0.51	+0.3
3,232,269	+		IAI47_15345	0.51	+1.3
3,232,269	+		IAI47_15345	0.51	-1.8
3,232,269	+		IAI47_15345	0.51	+1.7
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3,232,269	+		IAI47_15345	0.51	+0.5
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3,232,269	+		IAI47_15345	0.51	+0.1
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3,232,270	-		IAI47_15345	0.51	+0.7
3,232,270	-		IAI47_15345	0.51	+1.9
3,232,270	-		IAI47_15345	0.51	-0.3
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3,232,310	+		IAI47_15345	0.54	-0.3
3,232,343	+		IAI47_15345	0.57	+0.4
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3,232,344	-		IAI47_15345	0.57	+0.4
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3,232,387	+		IAI47_15345	0.60	+1.7
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3,232,418	+		IAI47_15345	0.62	+0.2
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3,232,419	-		IAI47_15345	0.62	+1.6
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3,232,419	-		IAI47_15345	0.62	-0.0
3,232,419	-		IAI47_15345	0.62	-0.7