Strain Fitness in Pantoea sp. MT58 around IAI47_07180

Experiment: nitrogen source Ammonium chloride 20mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source Ammonium chloride 20mM
1,515,739	+		IAI47_07175	0.31	-0.7
1,515,763	+		IAI47_07175	0.33	+1.4
1,515,763	+		IAI47_07175	0.33	-0.5
1,515,763	+		IAI47_07175	0.33	+0.5
1,515,763	+		IAI47_07175	0.33	+0.8
1,515,763	+		IAI47_07175	0.33	+0.2
1,515,763	+		IAI47_07175	0.33	-2.4
1,515,763	+		IAI47_07175	0.33	+0.5
1,515,763	+		IAI47_07175	0.33	-0.7
1,515,764	-		IAI47_07175	0.33	-0.6
1,515,764	-		IAI47_07175	0.33	-0.8
1,515,764	-		IAI47_07175	0.33	+1.7
1,515,764	-		IAI47_07175	0.33	-0.5
1,515,786	+		IAI47_07175	0.35	+1.0
1,515,886	-		IAI47_07175	0.45	+1.2
1,515,910	+		IAI47_07175	0.47	-1.4
1,515,910	+		IAI47_07175	0.47	-1.9
1,515,910	+		IAI47_07175	0.47	-0.4
1,515,910	+		IAI47_07175	0.47	+0.3
1,515,910	+		IAI47_07175	0.47	+0.9
1,515,910	+		IAI47_07175	0.47	+0.4
1,515,910	+		IAI47_07175	0.47	-0.4
1,515,910	+		IAI47_07175	0.47	+0.8
1,515,910	+		IAI47_07175	0.47	+0.0
1,515,910	+		IAI47_07175	0.47	+0.8
1,515,911	-		IAI47_07175	0.47	+1.8
1,515,911	-		IAI47_07175	0.47	-1.7
1,515,911	-		IAI47_07175	0.47	+0.5
1,515,911	-		IAI47_07175	0.47	-1.1
1,515,911	-		IAI47_07175	0.47	-0.8
1,515,911	-		IAI47_07175	0.47	+0.8
1,515,912	+		IAI47_07175	0.47	+0.7
1,515,912	+		IAI47_07175	0.47	-1.2
1,515,912	+		IAI47_07175	0.47	+0.5
1,515,913	-		IAI47_07175	0.47	-0.7
1,515,964	+		IAI47_07175	0.52	+1.7
1,515,965	-		IAI47_07175	0.52	+0.7
1,515,965	-		IAI47_07175	0.52	-0.8
1,516,041	+		IAI47_07175	0.59	-0.4
1,516,044	+		IAI47_07175	0.60	-2.0
1,516,044	+		IAI47_07175	0.60	+2.5
1,516,045	-		IAI47_07175	0.60	+0.2
1,516,045	-		IAI47_07175	0.60	-0.9
1,516,045	-		IAI47_07175	0.60	+0.8
1,516,045	-		IAI47_07175	0.60	-0.6
1,516,123	-		IAI47_07175	0.67	+0.5
1,516,128	+		IAI47_07175	0.68	+0.9
1,516,128	+		IAI47_07175	0.68	-1.9
1,516,128	+		IAI47_07175	0.68	-0.0
1,516,128	+		IAI47_07175	0.68	-1.6
1,516,128	+		IAI47_07175	0.68	-0.7
1,516,128	+		IAI47_07175	0.68	+0.3
1,516,129	-		IAI47_07175	0.68	-1.0
1,516,129	-		IAI47_07175	0.68	-0.2
1,516,131	+		IAI47_07175	0.68	+0.1
1,516,132	-		IAI47_07175	0.68	+0.0
1,516,132	-		IAI47_07175	0.68	+1.8
1,516,132	-		IAI47_07175	0.68	+1.3
1,516,132	-		IAI47_07175	0.68	-0.3
1,516,132	-		IAI47_07175	0.68	+0.9
1,516,138	-		IAI47_07175	0.69	+0.9
1,516,158	+		IAI47_07175	0.70	+1.6
1,516,158	+		IAI47_07175	0.70	-1.7
1,516,159	-		IAI47_07175	0.71	+0.7
1,516,159	-		IAI47_07175	0.71	-2.2
1,516,194	+		IAI47_07175	0.74	-0.1
1,516,194	+		IAI47_07175	0.74	+0.5
1,516,194	+		IAI47_07175	0.74	+1.3
1,516,194	+		IAI47_07175	0.74	-0.9
1,516,195	-		IAI47_07175	0.74	+0.1
1,516,195	-		IAI47_07175	0.74	-2.3
1,516,195	-		IAI47_07175	0.74	+0.0
1,516,195	-		IAI47_07175	0.74	+0.8
1,516,200	+		IAI47_07175	0.74	+2.3
1,516,200	+		IAI47_07175	0.74	-0.2
1,516,201	-		IAI47_07175	0.75	-0.5
1,516,263	-		IAI47_07175	0.80	+1.5
1,516,263	-		IAI47_07175	0.80	+0.3
1,516,387	+				+1.3
1,516,387	+				-2.3
1,516,387	+				-1.1
1,516,387	+				-2.2
1,516,387	+				-0.5
1,516,388	-				+2.7
1,516,393	+				-1.0
1,516,468	+				+2.2
1,516,468	+				+1.1
1,516,469	-				+0.6
1,516,489	+				+0.4
1,516,489	+				-0.7
1,516,489	+				+0.3
1,516,489	+				+0.2
1,516,490	-				-0.6
1,516,515	+				+1.4
1,516,515	+				-0.5
1,516,520	+				-0.4
1,516,520	+				-0.2
1,516,520	+				-0.6
1,516,520	+				+0.9
1,516,521	-				+0.6
1,516,521	-				-0.6
1,516,521	-				+0.2
1,516,521	-				+1.2
1,516,538	+				-1.0
1,516,538	+				+0.4
1,516,539	-				+0.7
1,516,555	+				+1.1
1,516,555	+				+1.1
1,516,574	+				+0.0
1,516,575	-				-0.5
1,516,662	+				-0.8
1,516,663	-				+0.7
1,516,663	-				+0.7
1,516,678	+		IAI47_07180	0.14	+0.2
1,516,678	+		IAI47_07180	0.14	-0.0
1,516,678	+		IAI47_07180	0.14	-0.0
1,516,678	+		IAI47_07180	0.14	+0.3
1,516,678	+		IAI47_07180	0.14	+0.5
1,516,678	+		IAI47_07180	0.14	-0.1
1,516,678	+		IAI47_07180	0.14	+0.0
1,516,678	+		IAI47_07180	0.14	-0.1
1,516,678	+		IAI47_07180	0.14	-0.6
1,516,679	-		IAI47_07180	0.15	-1.9
1,516,781	+		IAI47_07180	0.46	+0.8
1,516,782	-		IAI47_07180	0.46	-0.2
1,516,782	-		IAI47_07180	0.46	-0.1
1,516,782	-		IAI47_07180	0.46	-0.3
1,516,783	+		IAI47_07180	0.46	-2.4
1,516,783	+		IAI47_07180	0.46	+0.1
1,516,783	+		IAI47_07180	0.46	-1.2
1,516,783	+		IAI47_07180	0.46	-1.1
1,516,784	-		IAI47_07180	0.47	-1.6
1,516,811	-		IAI47_07180	0.55	+0.1
1,516,844	+		IAI47_07180	0.65	+0.3
1,516,865	+		IAI47_07180	0.72	+0.8
1,516,865	+		IAI47_07180	0.72	+0.2
1,516,865	+		IAI47_07180	0.72	-0.2
1,516,865	+		IAI47_07180	0.72	-0.2
1,516,865	+		IAI47_07180	0.72	+0.7
1,516,865	+		IAI47_07180	0.72	+0.4
1,516,865	+		IAI47_07180	0.72	-0.7
1,516,865	+		IAI47_07180	0.72	-0.6
1,516,865	+		IAI47_07180	0.72	-0.6
1,516,865	+		IAI47_07180	0.72	-0.1
1,516,865	+		IAI47_07180	0.72	-1.5
1,516,865	+		IAI47_07180	0.72	+2.0
1,516,866	-		IAI47_07180	0.72	+0.9
1,516,866	-		IAI47_07180	0.72	-1.5
1,516,866	-		IAI47_07180	0.72	+1.3
1,516,866	-		IAI47_07180	0.72	+2.1
1,516,866	-		IAI47_07180	0.72	-0.2
1,516,866	-		IAI47_07180	0.72	-0.1
1,516,866	-		IAI47_07180	0.72	-0.3
1,516,913	-		IAI47_07180	0.86	+0.8
1,516,955	+				+0.7
1,516,955	+				+0.3
1,516,956	-				-1.3
1,516,963	+				-0.1
1,516,963	+				+0.4
1,516,964	-				-0.0
1,516,964	-				+0.3
1,516,964	-				-0.1
1,516,964	-				-1.0
1,516,965	+				+0.5
1,516,965	+				-0.4
1,516,965	+				+0.7
1,516,965	+				-0.5
1,516,965	+				-0.4
1,516,965	+				-0.7
1,516,965	+				+0.8
1,516,965	+				+0.5
1,516,965	+				+0.7
1,516,965	+				+0.5
1,516,965	+				-1.0
1,516,965	+				+0.3
1,516,965	+				+0.4
1,516,965	+				+0.5
1,516,965	-				+0.9
1,516,965	-				-0.1
1,516,966	-				+0.3
1,516,966	-				-0.3
1,516,966	-				+0.9
1,516,966	-				-0.7
1,516,966	-				-0.3
1,516,966	-				+0.5
1,516,966	-				-0.6
1,516,966	-				+1.3
1,516,966	-				-0.3
1,516,966	-				-0.2
1,516,966	-				+1.3
1,516,966	-				+1.0
1,516,966	-				-0.5
1,516,976	+				+0.2
1,516,977	-				+0.9
1,516,977	-				+0.8
1,516,977	-				-0.5
1,516,986	+				+0.5
1,516,986	+				+2.2
1,516,986	+				+0.1
1,516,987	-				+0.8
1,516,987	-				+0.4
1,517,032	-				+0.2
1,517,054	+				+0.7
1,517,054	+				+0.2
1,517,055	-				-0.1
1,517,086	+				+1.3
1,517,087	-				+0.9
1,517,107	+				-0.5
1,517,107	+				-0.4
1,517,121	+				-2.7
1,517,121	+				+0.1
1,517,122	-				+1.1
1,517,122	-				+0.1
1,517,243	-		IAI47_07185	0.18	-2.1
1,517,276	+		IAI47_07185	0.21	+1.3
1,517,277	-		IAI47_07185	0.21	+0.8
1,517,277	-		IAI47_07185	0.21	-0.3
1,517,296	-		IAI47_07185	0.23	-1.3
1,517,318	-		IAI47_07185	0.25	+0.4
1,517,342	+		IAI47_07185	0.27	+0.5
1,517,343	-		IAI47_07185	0.27	-0.2
1,517,343	-		IAI47_07185	0.27	+0.7
1,517,343	-		IAI47_07185	0.27	+1.1
1,517,489	-		IAI47_07185	0.41	-1.7
1,517,563	+		IAI47_07185	0.48	+0.7
1,517,563	+		IAI47_07185	0.48	-0.7
1,517,563	+		IAI47_07185	0.48	-0.0
1,517,564	-		IAI47_07185	0.48	-0.3
1,517,683	+		IAI47_07185	0.59	-0.2
1,517,805	+		IAI47_07185	0.71	-1.0
1,517,806	-		IAI47_07185	0.71	+0.2