Strain Fitness in Pantoea sp. MT58 around IAI47_07170

Experiment: nitrogen source Ammonium chloride 20mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source Ammonium chloride 20mM
1,513,061	-		IAI47_07165	0.75	-2.9
1,513,073	-		IAI47_07165	0.76	-2.3
1,513,252	+		IAI47_07165	0.88	-0.0
1,513,451	+				-0.3
1,513,452	-				+0.3
1,513,453	+				-2.5
1,513,518	+				+0.9
1,513,518	+				+1.3
1,513,518	+				-0.7
1,513,569	+				-0.6
1,513,569	+				-3.4
1,513,570	-				-2.7
1,513,570	-				-0.7
1,513,570	-				+0.3
1,513,570	-				-0.2
1,513,571	+				+1.0
1,513,571	+				-0.2
1,513,571	+				-0.3
1,513,571	+				-0.5
1,513,571	+				+0.7
1,513,571	+				-0.3
1,513,571	+				-0.4
1,513,572	-				+0.9
1,513,572	-				+0.7
1,513,572	-				-1.2
1,513,572	-				-0.5
1,513,582	+				+0.1
1,513,599	+				+1.2
1,513,599	+				-0.6
1,513,600	-				-1.5
1,513,605	+				-0.1
1,513,605	+				-0.1
1,513,606	-				+0.4
1,513,606	-				+0.3
1,513,610	+				-0.3
1,513,617	+				+0.2
1,513,638	-				+0.3
1,513,704	+				-0.7
1,513,705	-				-0.5
1,513,705	-				+0.0
1,513,705	-				-0.5
1,513,705	-				-0.9
1,513,763	+				-0.7
1,513,763	+				-0.5
1,513,764	-				-0.1
1,513,764	-				-1.4
1,513,764	-				-0.0
1,513,817	+				+1.4
1,513,818	-				-0.3
1,513,818	-				+1.1
1,513,818	-				+0.5
1,513,818	-				+0.6
1,513,903	-				-0.0
1,513,979	+				-0.5
1,513,980	-				+0.4
1,513,980	-				-1.0
1,513,980	-				+1.8
1,513,980	-				+0.5
1,513,980	-				-1.4
1,513,980	-				+0.0
1,513,983	+				+1.5
1,513,984	-				-0.5
1,513,984	-				+0.7
1,513,984	-				-0.1
1,513,984	-				-0.1
1,514,028	+				+0.1
1,514,029	-				-0.4
1,514,033	+				-0.5
1,514,034	-				+0.8
1,514,034	-				+1.1
1,514,034	-				+1.5
1,514,203	+		IAI47_07170	0.18	+1.5
1,514,203	+		IAI47_07170	0.18	+1.6
1,514,203	+		IAI47_07170	0.18	+0.6
1,514,204	-		IAI47_07170	0.18	+0.6
1,514,250	+		IAI47_07170	0.22	+0.5
1,514,251	-		IAI47_07170	0.22	-1.2
1,514,251	-		IAI47_07170	0.22	-0.3
1,514,286	+		IAI47_07170	0.25	+1.3
1,514,287	-		IAI47_07170	0.25	+0.9
1,514,298	+		IAI47_07170	0.26	+2.1
1,514,298	+		IAI47_07170	0.26	-2.1
1,514,298	+		IAI47_07170	0.26	+1.6
1,514,298	+		IAI47_07170	0.26	+0.2
1,514,298	+		IAI47_07170	0.26	+0.1
1,514,335	-		IAI47_07170	0.29	-2.4
1,514,354	+		IAI47_07170	0.31	-0.4
1,514,354	+		IAI47_07170	0.31	-1.4
1,514,354	+		IAI47_07170	0.31	+0.2
1,514,354	+		IAI47_07170	0.31	+0.5
1,514,355	-		IAI47_07170	0.31	+0.8
1,514,355	-		IAI47_07170	0.31	+0.0
1,514,355	-		IAI47_07170	0.31	-1.2
1,514,355	-		IAI47_07170	0.31	-0.5
1,514,410	+		IAI47_07170	0.36	+1.5
1,514,455	+		IAI47_07170	0.39	+2.0
1,514,455	+		IAI47_07170	0.39	+1.3
1,514,455	+		IAI47_07170	0.39	-1.1
1,514,456	-		IAI47_07170	0.40	+0.7
1,514,456	-		IAI47_07170	0.40	-0.9
1,514,456	-		IAI47_07170	0.40	-1.1
1,514,456	-		IAI47_07170	0.40	+0.4
1,514,456	-		IAI47_07170	0.40	-0.2
1,514,456	-		IAI47_07170	0.40	-1.2
1,514,482	-		IAI47_07170	0.42	+1.6
1,514,542	-		IAI47_07170	0.47	+0.1
1,514,565	+		IAI47_07170	0.49	-1.3
1,514,565	+		IAI47_07170	0.49	+0.3
1,514,565	+		IAI47_07170	0.49	+0.5
1,514,565	+		IAI47_07170	0.49	+0.2
1,514,566	-		IAI47_07170	0.49	-1.2
1,514,587	+		IAI47_07170	0.51	-2.3
1,514,587	+		IAI47_07170	0.51	-0.2
1,514,587	+		IAI47_07170	0.51	-0.9
1,514,587	+		IAI47_07170	0.51	+0.3
1,514,588	-		IAI47_07170	0.51	-0.0
1,514,588	-		IAI47_07170	0.51	+0.2
1,514,588	-		IAI47_07170	0.51	+0.4
1,514,588	-		IAI47_07170	0.51	-0.9
1,514,588	-		IAI47_07170	0.51	+0.7
1,514,588	-		IAI47_07170	0.51	-0.5
1,514,596	+		IAI47_07170	0.52	-2.2
1,514,596	+		IAI47_07170	0.52	-0.8
1,514,596	+		IAI47_07170	0.52	+0.5
1,514,596	+		IAI47_07170	0.52	+0.5
1,514,596	+		IAI47_07170	0.52	-0.1
1,514,596	+		IAI47_07170	0.52	+0.3
1,514,596	+		IAI47_07170	0.52	+0.0
1,514,596	+		IAI47_07170	0.52	+2.2
1,514,597	-		IAI47_07170	0.52	-0.1
1,514,597	-		IAI47_07170	0.52	+0.0
1,514,597	-		IAI47_07170	0.52	-0.0
1,514,597	-		IAI47_07170	0.52	+0.1
1,514,628	+		IAI47_07170	0.54	+1.4
1,514,628	+		IAI47_07170	0.54	-0.3
1,514,643	+		IAI47_07170	0.56	+0.3
1,514,644	-		IAI47_07170	0.56	+0.7
1,514,664	+		IAI47_07170	0.57	-2.2
1,514,665	-		IAI47_07170	0.57	-0.5
1,514,665	-		IAI47_07170	0.57	-0.2
1,514,665	-		IAI47_07170	0.57	-0.5
1,514,686	-		IAI47_07170	0.59	-0.9
1,514,715	+		IAI47_07170	0.62	-1.1
1,514,716	-		IAI47_07170	0.62	-0.9
1,514,722	-		IAI47_07170	0.62	-0.6
1,514,722	-		IAI47_07170	0.62	+0.8
1,514,722	-		IAI47_07170	0.62	-0.2
1,514,722	-		IAI47_07170	0.62	+1.1
1,514,808	+		IAI47_07170	0.70	-0.6
1,514,808	+		IAI47_07170	0.70	-0.1
1,514,841	+		IAI47_07170	0.73	+0.8
1,514,842	-		IAI47_07170	0.73	-0.5
1,514,842	-		IAI47_07170	0.73	+0.7
1,514,842	-		IAI47_07170	0.73	+0.1
1,514,842	-		IAI47_07170	0.73	-1.2
1,514,842	-		IAI47_07170	0.73	+2.1
1,514,842	-		IAI47_07170	0.73	-0.3
1,514,842	-		IAI47_07170	0.73	-0.6
1,514,844	-		IAI47_07170	0.73	-0.2
1,514,866	-		IAI47_07170	0.75	+1.0
1,514,893	+		IAI47_07170	0.77	-0.7
1,514,894	-		IAI47_07170	0.77	-0.9
1,514,899	-		IAI47_07170	0.78	+0.8
1,514,899	-		IAI47_07170	0.78	+0.7
1,514,938	+		IAI47_07170	0.81	-1.9
1,514,938	+		IAI47_07170	0.81	-2.6
1,514,938	+		IAI47_07170	0.81	-0.5
1,514,938	+		IAI47_07170	0.81	-0.0
1,514,938	+		IAI47_07170	0.81	-1.0
1,514,938	+		IAI47_07170	0.81	+0.6
1,514,938	+		IAI47_07170	0.81	+0.6
1,514,938	+		IAI47_07170	0.81	-0.1
1,514,938	+		IAI47_07170	0.81	+0.2
1,514,938	+		IAI47_07170	0.81	+0.3
1,514,938	+		IAI47_07170	0.81	-0.7
1,514,938	+		IAI47_07170	0.81	+0.2
1,514,939	-		IAI47_07170	0.81	+0.4
1,514,939	-		IAI47_07170	0.81	+0.2
1,514,939	-		IAI47_07170	0.81	+0.3
1,514,939	-		IAI47_07170	0.81	+0.7
1,514,939	-		IAI47_07170	0.81	-0.3
1,514,939	-		IAI47_07170	0.81	+0.3
1,514,939	-		IAI47_07170	0.81	-0.4
1,514,939	-		IAI47_07170	0.81	-2.0
1,514,939	-		IAI47_07170	0.81	+0.6
1,514,939	-		IAI47_07170	0.81	+1.5
1,514,983	+		IAI47_07170	0.85	-0.3
1,514,983	+		IAI47_07170	0.85	-0.1
1,514,983	+		IAI47_07170	0.85	+0.4
1,514,983	+		IAI47_07170	0.85	-0.5
1,514,983	+		IAI47_07170	0.85	-0.4
1,514,984	-		IAI47_07170	0.85	+1.3
1,514,984	-		IAI47_07170	0.85	+0.0
1,515,007	+		IAI47_07170	0.87	+1.1
1,515,139	+				+1.2
1,515,139	+				-1.9
1,515,140	-				-0.1
1,515,140	-				+0.6
1,515,178	+				+0.3
1,515,179	-				+0.3
1,515,239	-				-0.2
1,515,239	-				+0.7
1,515,245	+				+0.4
1,515,284	+				+0.4
1,515,284	+				-2.4
1,515,284	+				-0.6
1,515,284	+				+1.3
1,515,284	+				-1.1
1,515,284	+				-0.7
1,515,284	+				-0.3
1,515,285	-				+0.7
1,515,285	-				+0.8
1,515,285	-				-0.2
1,515,285	-				+0.5
1,515,285	-				+0.6
1,515,303	+				+0.8
1,515,304	-				+0.1
1,515,304	-				+0.2
1,515,335	+				-0.4
1,515,372	+				-0.3
1,515,372	+				-0.1
1,515,372	+				-0.3
1,515,372	+				+1.7
1,515,372	+				-0.5
1,515,373	-				+0.8
1,515,373	-				+0.2
1,515,373	-				+0.3
1,515,378	-				+0.3
1,515,386	+				+0.2
1,515,386	+				-0.6
1,515,386	+				-3.5
1,515,386	+				-1.0
1,515,386	+				+0.8
1,515,386	+				+0.9
1,515,386	+				+0.9
1,515,386	+				+0.4
1,515,386	+				+1.3
1,515,386	+				+0.6
1,515,386	+				+0.3
1,515,386	+				+1.6
1,515,386	+				+0.1
1,515,387	-				+0.9
1,515,387	-				+0.7
1,515,387	-				+0.0
1,515,387	-				+1.2
1,515,387	-				-0.5
1,515,387	-				-2.4
1,515,387	-				+0.8
1,515,424	-				-0.3
1,515,431	+				+0.2
1,515,432	-				-0.5
1,515,464	-				+0.1
1,515,562	-		IAI47_07175	0.14	+0.1
1,515,739	+		IAI47_07175	0.31	-0.7
1,515,763	+		IAI47_07175	0.33	+1.4
1,515,763	+		IAI47_07175	0.33	-0.5
1,515,763	+		IAI47_07175	0.33	+0.5
1,515,763	+		IAI47_07175	0.33	+0.8
1,515,763	+		IAI47_07175	0.33	+0.2
1,515,763	+		IAI47_07175	0.33	-2.4
1,515,763	+		IAI47_07175	0.33	+0.5
1,515,763	+		IAI47_07175	0.33	-0.7
1,515,764	-		IAI47_07175	0.33	-0.6
1,515,764	-		IAI47_07175	0.33	-0.8
1,515,764	-		IAI47_07175	0.33	+1.7
1,515,764	-		IAI47_07175	0.33	-0.5
1,515,786	+		IAI47_07175	0.35	+1.0
1,515,886	-		IAI47_07175	0.45	+1.2
1,515,910	+		IAI47_07175	0.47	-1.4
1,515,910	+		IAI47_07175	0.47	-1.9
1,515,910	+		IAI47_07175	0.47	-0.4
1,515,910	+		IAI47_07175	0.47	+0.3
1,515,910	+		IAI47_07175	0.47	+0.9
1,515,910	+		IAI47_07175	0.47	+0.4
1,515,910	+		IAI47_07175	0.47	-0.4
1,515,910	+		IAI47_07175	0.47	+0.8
1,515,910	+		IAI47_07175	0.47	+0.0
1,515,910	+		IAI47_07175	0.47	+0.8
1,515,911	-		IAI47_07175	0.47	+1.8
1,515,911	-		IAI47_07175	0.47	-1.7
1,515,911	-		IAI47_07175	0.47	+0.5
1,515,911	-		IAI47_07175	0.47	-1.1
1,515,911	-		IAI47_07175	0.47	-0.8
1,515,911	-		IAI47_07175	0.47	+0.8
1,515,912	+		IAI47_07175	0.47	+0.7
1,515,912	+		IAI47_07175	0.47	-1.2
1,515,912	+		IAI47_07175	0.47	+0.5
1,515,913	-		IAI47_07175	0.47	-0.7
1,515,964	+		IAI47_07175	0.52	+1.7
1,515,965	-		IAI47_07175	0.52	+0.7
1,515,965	-		IAI47_07175	0.52	-0.8
1,516,041	+		IAI47_07175	0.59	-0.4
1,516,044	+		IAI47_07175	0.60	-2.0
1,516,044	+		IAI47_07175	0.60	+2.5
1,516,045	-		IAI47_07175	0.60	+0.2
1,516,045	-		IAI47_07175	0.60	-0.9
1,516,045	-		IAI47_07175	0.60	+0.8
1,516,045	-		IAI47_07175	0.60	-0.6
1,516,123	-		IAI47_07175	0.67	+0.5
1,516,128	+		IAI47_07175	0.68	+0.9
1,516,128	+		IAI47_07175	0.68	-1.9
1,516,128	+		IAI47_07175	0.68	-0.0
1,516,128	+		IAI47_07175	0.68	-1.6
1,516,128	+		IAI47_07175	0.68	-0.7
1,516,128	+		IAI47_07175	0.68	+0.3
1,516,129	-		IAI47_07175	0.68	-1.0
1,516,129	-		IAI47_07175	0.68	-0.2
1,516,131	+		IAI47_07175	0.68	+0.1
1,516,132	-		IAI47_07175	0.68	+0.0
1,516,132	-		IAI47_07175	0.68	+1.8
1,516,132	-		IAI47_07175	0.68	+1.3
1,516,132	-		IAI47_07175	0.68	-0.3
1,516,132	-		IAI47_07175	0.68	+0.9
1,516,138	-		IAI47_07175	0.69	+0.9
1,516,158	+		IAI47_07175	0.70	+1.6
1,516,158	+		IAI47_07175	0.70	-1.7
1,516,159	-		IAI47_07175	0.71	+0.7
1,516,159	-		IAI47_07175	0.71	-2.2