Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3124

Experiment: Carbenicillin 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3123 and Ga0059261_3124 overlap by 4 nucleotidesGa0059261_3124 and Ga0059261_3125 overlap by 1 nucleotidesGa0059261_3125 and Ga0059261_3126 overlap by 4 nucleotides Ga0059261_3123: Ga0059261_3123 - N-acetyl sugar amidotransferase, at 3,263,359 to 3,264,483 _3123 Ga0059261_3124: Ga0059261_3124 - imidazole glycerol phosphate synthase, glutamine amidotransferase subunit, at 3,264,480 to 3,265,094 _3124 Ga0059261_3125: Ga0059261_3125 - Imidazoleglycerol-phosphate synthase, at 3,265,094 to 3,265,876 _3125 Ga0059261_3126: Ga0059261_3126 - Predicted dehydrogenases and related proteins, at 3,265,873 to 3,267,996 _3126 Position (kb) 3264 3265 3266Strain fitness (log2 ratio) -2 -1 0 1at 3264.845 kb on + strand, within Ga0059261_3124at 3264.915 kb on + strand, within Ga0059261_3124at 3264.930 kb on + strand, within Ga0059261_3124at 3264.930 kb on + strand, within Ga0059261_3124at 3264.930 kb on + strand, within Ga0059261_3124at 3264.930 kb on + strand, within Ga0059261_3124at 3264.930 kb on + strand, within Ga0059261_3124at 3264.933 kb on + strand, within Ga0059261_3124at 3264.933 kb on + strand, within Ga0059261_3124at 3264.933 kb on + strand, within Ga0059261_3124at 3264.933 kb on + strandat 3264.933 kb on + strand, within Ga0059261_3124at 3264.978 kb on + strand, within Ga0059261_3124at 3264.978 kb on + strand, within Ga0059261_3124at 3264.978 kb on + strand, within Ga0059261_3124at 3264.978 kb on + strand, within Ga0059261_3124at 3264.978 kb on + strand, within Ga0059261_3124at 3264.978 kb on + strand, within Ga0059261_3124at 3265.175 kb on + strand, within Ga0059261_3125at 3265.175 kb on + strand, within Ga0059261_3125at 3265.204 kb on + strand, within Ga0059261_3125at 3265.643 kb on + strand, within Ga0059261_3125at 3265.643 kb on + strand, within Ga0059261_3125

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.03 mg/ml
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3,264,845 + Ga0059261_3124 0.59 -0.8
3,264,915 + Ga0059261_3124 0.71 -1.3
3,264,930 + Ga0059261_3124 0.73 -1.3
3,264,930 + Ga0059261_3124 0.73 -0.2
3,264,930 + Ga0059261_3124 0.73 -0.6
3,264,930 + Ga0059261_3124 0.73 -0.9
3,264,930 + Ga0059261_3124 0.73 +0.0
3,264,933 + Ga0059261_3124 0.74 -2.2
3,264,933 + Ga0059261_3124 0.74 +0.2
3,264,933 + Ga0059261_3124 0.74 -1.3
3,264,933 + +0.6
3,264,933 + Ga0059261_3124 0.74 -0.4
3,264,978 + Ga0059261_3124 0.81 -1.4
3,264,978 + Ga0059261_3124 0.81 -0.9
3,264,978 + Ga0059261_3124 0.81 +0.0
3,264,978 + Ga0059261_3124 0.81 +0.4
3,264,978 + Ga0059261_3124 0.81 -2.0
3,264,978 + Ga0059261_3124 0.81 -0.3
3,265,175 + Ga0059261_3125 0.10 +1.3
3,265,175 + Ga0059261_3125 0.10 -0.9
3,265,204 + Ga0059261_3125 0.14 +0.8
3,265,643 + Ga0059261_3125 0.70 -2.3
3,265,643 + Ga0059261_3125 0.70 -0.6

Or see this region's nucleotide sequence