Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2162

Experiment: Carbenicillin 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2161 and Ga0059261_2162 overlap by 4 nucleotidesGa0059261_2162 and Ga0059261_2163 are separated by 24 nucleotidesGa0059261_2163 and Ga0059261_2164 are separated by 22 nucleotides Ga0059261_2161: Ga0059261_2161 - hydroxymethylbilane synthase (EC 2.5.1.61), at 2,273,306 to 2,274,214 _2161 Ga0059261_2162: Ga0059261_2162 - Uroporphyrinogen-III synthase, at 2,274,211 to 2,274,879 _2162 Ga0059261_2163: Ga0059261_2163 - hypothetical protein, at 2,274,904 to 2,275,797 _2163 Ga0059261_2164: Ga0059261_2164 - Acyl-CoA dehydrogenases, at 2,275,820 to 2,277,004 _2164 Position (kb) 2274 2275Strain fitness (log2 ratio) -2 -1 0 1 2at 2273.294 kb on + strandat 2273.294 kb on + strandat 2273.294 kb on + strandat 2273.294 kb on + strandat 2274.894 kb on + strandat 2274.894 kb on + strandat 2274.894 kb on + strandat 2274.894 kb on + strandat 2275.222 kb on + strandat 2275.223 kb on - strand, within Ga0059261_2163at 2275.358 kb on + strandat 2275.736 kb on + strandat 2275.736 kb on + strandat 2275.736 kb on + strandat 2275.736 kb on + strandat 2275.736 kb on + strandat 2275.736 kb on + strandat 2275.736 kb on + strandat 2275.737 kb on - strandat 2275.737 kb on - strandat 2275.737 kb on - strandat 2275.795 kb on + strandat 2275.795 kb on + strandat 2275.796 kb on - strandat 2275.796 kb on - strandat 2275.796 kb on - strandat 2275.796 kb on - strandat 2275.796 kb on - strandat 2275.796 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.03 mg/ml
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2,273,294 + +1.2
2,273,294 + +0.7
2,273,294 + -0.0
2,273,294 + -0.4
2,274,894 + +2.2
2,274,894 + -0.6
2,274,894 + -1.0
2,274,894 + -2.3
2,275,222 + -0.3
2,275,223 - Ga0059261_2163 0.36 +0.2
2,275,358 + -0.3
2,275,736 + +0.2
2,275,736 + -0.3
2,275,736 + +0.7
2,275,736 + +0.4
2,275,736 + +0.1
2,275,736 + -0.5
2,275,736 + +0.2
2,275,737 - -0.3
2,275,737 - -0.0
2,275,737 - -0.5
2,275,795 + -0.8
2,275,795 + -0.7
2,275,796 - +0.2
2,275,796 - -0.1
2,275,796 - +0.2
2,275,796 - +1.5
2,275,796 - -0.6
2,275,796 - -0.8

Or see this region's nucleotide sequence