Experiment: Carbenicillin 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0881 and Ga0059261_0882 are separated by 160 nucleotides Ga0059261_0882 and Ga0059261_0883 overlap by 23 nucleotides Ga0059261_0883 and Ga0059261_0884 are separated by 72 nucleotides
Ga0059261_0881: Ga0059261_0881 - tRNA and rRNA cytosine-C5-methylases, at 921,838 to 923,022
_0881
Ga0059261_0882: Ga0059261_0882 - Predicted membrane protein, at 923,183 to 924,352
_0882
Ga0059261_0883: Ga0059261_0883 - hypothetical protein, at 924,330 to 925,121
_0883
Ga0059261_0884: Ga0059261_0884 - Transcriptional regulator, at 925,194 to 926,099
_0884
Position (kb)
923
924
925 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 922.484 kb on + strand, within Ga0059261_0881 at 922.484 kb on + strand, within Ga0059261_0881 at 922.485 kb on - strand, within Ga0059261_0881 at 922.485 kb on - strand, within Ga0059261_0881 at 922.485 kb on - strand, within Ga0059261_0881 at 922.752 kb on - strand at 922.752 kb on - strand, within Ga0059261_0881 at 922.902 kb on - strand at 922.902 kb on - strand, within Ga0059261_0881 at 923.004 kb on + strand at 923.142 kb on + strand at 923.143 kb on - strand at 923.357 kb on + strand, within Ga0059261_0882 at 923.357 kb on + strand, within Ga0059261_0882 at 923.420 kb on + strand, within Ga0059261_0882 at 923.420 kb on + strand, within Ga0059261_0882 at 923.420 kb on + strand, within Ga0059261_0882 at 923.421 kb on - strand, within Ga0059261_0882 at 923.421 kb on - strand, within Ga0059261_0882 at 923.421 kb on - strand at 923.421 kb on - strand, within Ga0059261_0882 at 923.421 kb on - strand, within Ga0059261_0882 at 923.421 kb on - strand, within Ga0059261_0882 at 923.461 kb on + strand, within Ga0059261_0882 at 923.461 kb on + strand, within Ga0059261_0882 at 923.461 kb on + strand, within Ga0059261_0882 at 923.462 kb on - strand, within Ga0059261_0882 at 923.462 kb on - strand, within Ga0059261_0882 at 923.462 kb on - strand, within Ga0059261_0882 at 923.544 kb on - strand, within Ga0059261_0882 at 923.544 kb on - strand, within Ga0059261_0882 at 923.544 kb on - strand, within Ga0059261_0882 at 923.547 kb on + strand, within Ga0059261_0882 at 923.574 kb on + strand, within Ga0059261_0882 at 923.627 kb on + strand, within Ga0059261_0882 at 923.628 kb on - strand, within Ga0059261_0882 at 923.657 kb on + strand, within Ga0059261_0882 at 923.657 kb on + strand, within Ga0059261_0882 at 923.657 kb on + strand, within Ga0059261_0882 at 923.657 kb on + strand, within Ga0059261_0882 at 923.657 kb on + strand, within Ga0059261_0882 at 923.657 kb on + strand, within Ga0059261_0882 at 923.658 kb on - strand, within Ga0059261_0882 at 923.672 kb on + strand, within Ga0059261_0882 at 923.673 kb on - strand, within Ga0059261_0882 at 923.673 kb on - strand, within Ga0059261_0882 at 923.673 kb on - strand, within Ga0059261_0882 at 923.731 kb on + strand, within Ga0059261_0882 at 923.794 kb on + strand, within Ga0059261_0882 at 923.794 kb on + strand, within Ga0059261_0882 at 923.794 kb on + strand, within Ga0059261_0882 at 923.794 kb on + strand, within Ga0059261_0882 at 923.794 kb on + strand, within Ga0059261_0882 at 923.795 kb on - strand, within Ga0059261_0882 at 923.795 kb on - strand, within Ga0059261_0882 at 923.795 kb on - strand, within Ga0059261_0882 at 923.795 kb on - strand, within Ga0059261_0882 at 923.795 kb on - strand, within Ga0059261_0882 at 923.795 kb on - strand, within Ga0059261_0882 at 923.795 kb on - strand, within Ga0059261_0882 at 923.795 kb on - strand, within Ga0059261_0882 at 923.795 kb on - strand, within Ga0059261_0882 at 923.908 kb on + strand, within Ga0059261_0882 at 923.909 kb on - strand, within Ga0059261_0882 at 923.954 kb on + strand, within Ga0059261_0882 at 923.955 kb on - strand, within Ga0059261_0882 at 923.955 kb on - strand, within Ga0059261_0882 at 924.015 kb on - strand, within Ga0059261_0882 at 924.022 kb on + strand, within Ga0059261_0882 at 924.022 kb on + strand, within Ga0059261_0882 at 924.022 kb on + strand, within Ga0059261_0882 at 924.022 kb on + strand, within Ga0059261_0882 at 924.022 kb on + strand, within Ga0059261_0882 at 924.022 kb on + strand, within Ga0059261_0882 at 924.022 kb on + strand, within Ga0059261_0882 at 924.023 kb on - strand, within Ga0059261_0882 at 924.023 kb on - strand, within Ga0059261_0882 at 924.023 kb on - strand, within Ga0059261_0882 at 924.023 kb on - strand, within Ga0059261_0882 at 924.023 kb on - strand, within Ga0059261_0882 at 924.023 kb on - strand, within Ga0059261_0882 at 924.023 kb on - strand, within Ga0059261_0882 at 924.023 kb on - strand, within Ga0059261_0882 at 924.023 kb on - strand, within Ga0059261_0882 at 924.108 kb on + strand, within Ga0059261_0882 at 924.149 kb on + strand, within Ga0059261_0882 at 924.149 kb on + strand, within Ga0059261_0882 at 924.149 kb on + strand, within Ga0059261_0882 at 924.149 kb on + strand, within Ga0059261_0882 at 924.150 kb on - strand, within Ga0059261_0882 at 924.150 kb on - strand, within Ga0059261_0882 at 924.359 kb on - strand at 924.359 kb on - strand at 924.479 kb on - strand, within Ga0059261_0883 at 924.571 kb on + strand, within Ga0059261_0883 at 924.571 kb on + strand, within Ga0059261_0883 at 924.571 kb on + strand, within Ga0059261_0883 at 924.571 kb on + strand, within Ga0059261_0883 at 924.572 kb on - strand, within Ga0059261_0883 at 924.572 kb on - strand, within Ga0059261_0883 at 924.572 kb on - strand, within Ga0059261_0883 at 924.592 kb on + strand, within Ga0059261_0883 at 924.593 kb on - strand, within Ga0059261_0883 at 924.593 kb on - strand, within Ga0059261_0883 at 924.593 kb on - strand, within Ga0059261_0883 at 924.619 kb on + strand, within Ga0059261_0883 at 924.620 kb on - strand, within Ga0059261_0883 at 924.620 kb on - strand, within Ga0059261_0883 at 924.701 kb on + strand, within Ga0059261_0883 at 924.771 kb on + strand, within Ga0059261_0883 at 924.771 kb on + strand, within Ga0059261_0883 at 924.771 kb on + strand, within Ga0059261_0883 at 924.771 kb on + strand, within Ga0059261_0883 at 924.771 kb on + strand, within Ga0059261_0883 at 924.772 kb on - strand, within Ga0059261_0883 at 924.772 kb on - strand, within Ga0059261_0883 at 924.899 kb on + strand, within Ga0059261_0883 at 924.900 kb on - strand, within Ga0059261_0883 at 924.983 kb on + strand, within Ga0059261_0883 at 924.984 kb on - strand, within Ga0059261_0883 at 924.984 kb on - strand, within Ga0059261_0883 at 924.987 kb on - strand, within Ga0059261_0883 at 925.162 kb on + strand at 925.162 kb on + strand at 925.162 kb on + strand at 925.173 kb on + strand at 925.173 kb on + strand at 925.174 kb on - strand at 925.174 kb on - strand at 925.174 kb on - strand at 925.174 kb on - strand at 925.174 kb on - strand at 925.174 kb on - strand at 925.179 kb on + strand at 925.179 kb on + strand at 925.180 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.03 mg/ml remove 922,484 + Ga0059261_0881 0.55 -1.0 922,484 + Ga0059261_0881 0.55 -0.5 922,485 - Ga0059261_0881 0.55 -0.8 922,485 - Ga0059261_0881 0.55 -0.7 922,485 - Ga0059261_0881 0.55 +0.8 922,752 - +0.3 922,752 - Ga0059261_0881 0.77 -0.4 922,902 - -1.4 922,902 - Ga0059261_0881 0.90 +0.1 923,004 + +0.1 923,142 + -0.1 923,143 - +0.2 923,357 + Ga0059261_0882 0.15 -1.2 923,357 + Ga0059261_0882 0.15 +0.1 923,420 + Ga0059261_0882 0.20 +1.2 923,420 + Ga0059261_0882 0.20 +1.0 923,420 + Ga0059261_0882 0.20 -1.1 923,421 - Ga0059261_0882 0.20 -1.6 923,421 - Ga0059261_0882 0.20 +1.3 923,421 - -0.7 923,421 - Ga0059261_0882 0.20 -0.7 923,421 - Ga0059261_0882 0.20 -0.6 923,421 - Ga0059261_0882 0.20 -0.6 923,461 + Ga0059261_0882 0.24 +0.0 923,461 + Ga0059261_0882 0.24 +0.1 923,461 + Ga0059261_0882 0.24 -1.6 923,462 - Ga0059261_0882 0.24 +0.3 923,462 - Ga0059261_0882 0.24 +0.7 923,462 - Ga0059261_0882 0.24 -0.4 923,544 - Ga0059261_0882 0.31 -0.6 923,544 - Ga0059261_0882 0.31 +0.6 923,544 - Ga0059261_0882 0.31 -1.4 923,547 + Ga0059261_0882 0.31 -0.7 923,574 + Ga0059261_0882 0.33 -0.2 923,627 + Ga0059261_0882 0.38 -0.3 923,628 - Ga0059261_0882 0.38 +1.8 923,657 + Ga0059261_0882 0.41 +0.3 923,657 + Ga0059261_0882 0.41 +0.5 923,657 + Ga0059261_0882 0.41 -0.1 923,657 + Ga0059261_0882 0.41 -1.4 923,657 + Ga0059261_0882 0.41 +0.9 923,657 + Ga0059261_0882 0.41 +0.3 923,658 - Ga0059261_0882 0.41 -0.4 923,672 + Ga0059261_0882 0.42 -1.0 923,673 - Ga0059261_0882 0.42 -0.4 923,673 - Ga0059261_0882 0.42 +0.2 923,673 - Ga0059261_0882 0.42 +0.0 923,731 + Ga0059261_0882 0.47 -0.1 923,794 + Ga0059261_0882 0.52 +0.7 923,794 + Ga0059261_0882 0.52 +0.7 923,794 + Ga0059261_0882 0.52 +0.0 923,794 + Ga0059261_0882 0.52 +0.2 923,794 + Ga0059261_0882 0.52 -0.7 923,795 - Ga0059261_0882 0.52 +0.0 923,795 - Ga0059261_0882 0.52 -0.3 923,795 - Ga0059261_0882 0.52 +0.0 923,795 - Ga0059261_0882 0.52 -0.7 923,795 - Ga0059261_0882 0.52 -0.3 923,795 - Ga0059261_0882 0.52 +0.1 923,795 - Ga0059261_0882 0.52 +1.1 923,795 - Ga0059261_0882 0.52 -0.1 923,795 - Ga0059261_0882 0.52 -0.2 923,908 + Ga0059261_0882 0.62 -0.2 923,909 - Ga0059261_0882 0.62 -0.2 923,954 + Ga0059261_0882 0.66 -0.2 923,955 - Ga0059261_0882 0.66 -1.1 923,955 - Ga0059261_0882 0.66 -0.1 924,015 - Ga0059261_0882 0.71 -2.3 924,022 + Ga0059261_0882 0.72 -0.8 924,022 + Ga0059261_0882 0.72 +0.2 924,022 + Ga0059261_0882 0.72 -0.1 924,022 + Ga0059261_0882 0.72 -0.7 924,022 + Ga0059261_0882 0.72 -0.2 924,022 + Ga0059261_0882 0.72 +0.8 924,022 + Ga0059261_0882 0.72 +0.4 924,023 - Ga0059261_0882 0.72 +0.2 924,023 - Ga0059261_0882 0.72 -1.5 924,023 - Ga0059261_0882 0.72 -0.2 924,023 - Ga0059261_0882 0.72 -0.1 924,023 - Ga0059261_0882 0.72 -0.3 924,023 - Ga0059261_0882 0.72 -0.1 924,023 - Ga0059261_0882 0.72 +1.4 924,023 - Ga0059261_0882 0.72 -0.5 924,023 - Ga0059261_0882 0.72 +0.0 924,108 + Ga0059261_0882 0.79 +0.2 924,149 + Ga0059261_0882 0.83 -0.1 924,149 + Ga0059261_0882 0.83 -0.1 924,149 + Ga0059261_0882 0.83 +0.3 924,149 + Ga0059261_0882 0.83 -0.1 924,150 - Ga0059261_0882 0.83 +0.1 924,150 - Ga0059261_0882 0.83 -0.4 924,359 - -0.9 924,359 - -0.6 924,479 - Ga0059261_0883 0.19 -0.6 924,571 + Ga0059261_0883 0.30 -0.4 924,571 + Ga0059261_0883 0.30 +0.9 924,571 + Ga0059261_0883 0.30 -0.5 924,571 + Ga0059261_0883 0.30 +0.6 924,572 - Ga0059261_0883 0.31 -1.2 924,572 - Ga0059261_0883 0.31 -0.2 924,572 - Ga0059261_0883 0.31 -0.6 924,592 + Ga0059261_0883 0.33 +1.2 924,593 - Ga0059261_0883 0.33 +0.1 924,593 - Ga0059261_0883 0.33 +0.6 924,593 - Ga0059261_0883 0.33 +0.5 924,619 + Ga0059261_0883 0.36 -0.2 924,620 - Ga0059261_0883 0.37 -0.4 924,620 - Ga0059261_0883 0.37 -2.0 924,701 + Ga0059261_0883 0.47 -0.4 924,771 + Ga0059261_0883 0.56 +0.0 924,771 + Ga0059261_0883 0.56 -0.2 924,771 + Ga0059261_0883 0.56 -0.2 924,771 + Ga0059261_0883 0.56 +0.9 924,771 + Ga0059261_0883 0.56 -1.5 924,772 - Ga0059261_0883 0.56 -0.6 924,772 - Ga0059261_0883 0.56 -0.1 924,899 + Ga0059261_0883 0.72 -0.6 924,900 - Ga0059261_0883 0.72 +0.4 924,983 + Ga0059261_0883 0.82 -0.6 924,984 - Ga0059261_0883 0.83 +0.3 924,984 - Ga0059261_0883 0.83 +0.0 924,987 - Ga0059261_0883 0.83 +0.9 925,162 + -0.0 925,162 + -2.3 925,162 + +0.2 925,173 + +0.5 925,173 + +0.4 925,174 - +0.2 925,174 - +1.1 925,174 - +0.4 925,174 - +0.3 925,174 - -0.4 925,174 - +0.7 925,179 + -1.1 925,179 + -0.0 925,180 - +0.6
Or see this region's nucleotide sequence