Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0837

Experiment: Carbenicillin 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0836 and Ga0059261_0837 are separated by 138 nucleotidesGa0059261_0837 and Ga0059261_0838 overlap by 8 nucleotides Ga0059261_0836: Ga0059261_0836 - Beta-lactamase class C and other penicillin binding proteins, at 874,407 to 875,633 _0836 Ga0059261_0837: Ga0059261_0837 - 3-hydroxyacyl-CoA dehydrogenase, at 875,772 to 877,802 _0837 Ga0059261_0838: Ga0059261_0838 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases, at 877,795 to 879,156 _0838 Position (kb) 875 876 877 878Strain fitness (log2 ratio) -2 -1 0 1 2at 874.839 kb on + strand, within Ga0059261_0836at 874.839 kb on + strand, within Ga0059261_0836at 874.839 kb on + strand, within Ga0059261_0836at 874.839 kb on + strand, within Ga0059261_0836at 874.840 kb on - strand, within Ga0059261_0836at 874.840 kb on - strand, within Ga0059261_0836at 874.840 kb on - strand, within Ga0059261_0836at 874.902 kb on + strand, within Ga0059261_0836at 874.902 kb on + strand, within Ga0059261_0836at 874.902 kb on + strand, within Ga0059261_0836at 874.903 kb on - strand, within Ga0059261_0836at 874.913 kb on + strand, within Ga0059261_0836at 874.913 kb on + strand, within Ga0059261_0836at 874.914 kb on - strand, within Ga0059261_0836at 874.983 kb on + strand, within Ga0059261_0836at 874.983 kb on + strand, within Ga0059261_0836at 874.984 kb on - strand, within Ga0059261_0836at 874.984 kb on - strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.170 kb on - strand, within Ga0059261_0836at 875.170 kb on - strand, within Ga0059261_0836at 875.170 kb on - strand, within Ga0059261_0836at 875.170 kb on - strand, within Ga0059261_0836at 875.170 kb on - strand, within Ga0059261_0836at 875.253 kb on + strand, within Ga0059261_0836at 875.350 kb on + strand, within Ga0059261_0836at 875.351 kb on - strand, within Ga0059261_0836at 875.351 kb on - strand, within Ga0059261_0836at 875.351 kb on - strand, within Ga0059261_0836at 875.351 kb on - strand, within Ga0059261_0836at 875.490 kb on + strand, within Ga0059261_0836at 875.491 kb on - strand, within Ga0059261_0836at 875.491 kb on - strand, within Ga0059261_0836at 875.491 kb on - strand, within Ga0059261_0836at 875.616 kb on + strandat 875.616 kb on + strandat 875.616 kb on + strandat 875.617 kb on - strandat 875.617 kb on - strandat 875.617 kb on - strandat 875.650 kb on + strandat 875.650 kb on + strandat 876.110 kb on + strand, within Ga0059261_0837at 876.111 kb on - strand, within Ga0059261_0837at 876.327 kb on + strand, within Ga0059261_0837at 876.327 kb on + strand, within Ga0059261_0837at 876.327 kb on + strand, within Ga0059261_0837at 876.327 kb on + strand, within Ga0059261_0837at 876.328 kb on - strand, within Ga0059261_0837at 876.328 kb on - strand, within Ga0059261_0837at 876.328 kb on - strand, within Ga0059261_0837at 876.328 kb on - strand, within Ga0059261_0837at 876.498 kb on + strand, within Ga0059261_0837at 876.499 kb on - strand, within Ga0059261_0837at 876.784 kb on - strand, within Ga0059261_0837at 876.784 kb on - strand, within Ga0059261_0837at 876.906 kb on + strand, within Ga0059261_0837at 876.906 kb on + strand, within Ga0059261_0837at 876.914 kb on + strand, within Ga0059261_0837at 876.914 kb on + strand, within Ga0059261_0837at 876.914 kb on + strand, within Ga0059261_0837at 876.914 kb on + strand, within Ga0059261_0837at 876.914 kb on + strand, within Ga0059261_0837at 876.914 kb on + strand, within Ga0059261_0837at 876.914 kb on + strand, within Ga0059261_0837at 876.914 kb on + strand, within Ga0059261_0837at 876.914 kb on + strand, within Ga0059261_0837at 876.914 kb on + strand, within Ga0059261_0837at 876.915 kb on - strand, within Ga0059261_0837at 876.915 kb on - strand, within Ga0059261_0837at 876.993 kb on + strand, within Ga0059261_0837at 876.993 kb on + strand, within Ga0059261_0837at 876.993 kb on + strand, within Ga0059261_0837at 876.993 kb on + strand, within Ga0059261_0837at 876.993 kb on + strand, within Ga0059261_0837at 876.994 kb on - strand, within Ga0059261_0837at 876.994 kb on - strand, within Ga0059261_0837at 876.994 kb on - strand, within Ga0059261_0837at 876.994 kb on - strand, within Ga0059261_0837at 877.189 kb on - strand, within Ga0059261_0837at 877.189 kb on - strand, within Ga0059261_0837at 877.379 kb on + strand, within Ga0059261_0837at 877.437 kb on + strand, within Ga0059261_0837at 877.437 kb on + strand, within Ga0059261_0837at 877.437 kb on + strand, within Ga0059261_0837at 877.437 kb on + strand, within Ga0059261_0837at 877.437 kb on + strand, within Ga0059261_0837at 877.437 kb on + strand, within Ga0059261_0837at 877.437 kb on + strand, within Ga0059261_0837at 877.438 kb on - strand, within Ga0059261_0837at 877.438 kb on - strand, within Ga0059261_0837at 877.438 kb on - strand, within Ga0059261_0837at 877.438 kb on - strand, within Ga0059261_0837at 877.443 kb on + strandat 877.444 kb on - strand, within Ga0059261_0837at 877.444 kb on - strand, within Ga0059261_0837at 877.444 kb on - strand, within Ga0059261_0837at 877.566 kb on + strand, within Ga0059261_0837at 877.566 kb on + strand, within Ga0059261_0837at 877.566 kb on + strand, within Ga0059261_0837at 877.566 kb on + strand, within Ga0059261_0837at 877.566 kb on + strand, within Ga0059261_0837at 877.566 kb on + strand, within Ga0059261_0837at 877.567 kb on - strand, within Ga0059261_0837at 877.630 kb on + strandat 877.647 kb on + strandat 877.647 kb on + strandat 877.647 kb on + strandat 877.647 kb on + strandat 877.647 kb on + strandat 877.647 kb on + strandat 877.647 kb on + strandat 877.647 kb on + strandat 877.647 kb on + strandat 877.647 kb on + strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.653 kb on + strandat 877.668 kb on + strandat 878.127 kb on + strand, within Ga0059261_0838at 878.127 kb on + strand, within Ga0059261_0838at 878.128 kb on - strand, within Ga0059261_0838at 878.242 kb on + strandat 878.242 kb on + strand, within Ga0059261_0838at 878.242 kb on + strand, within Ga0059261_0838at 878.242 kb on + strand, within Ga0059261_0838at 878.242 kb on + strand, within Ga0059261_0838at 878.243 kb on - strand, within Ga0059261_0838at 878.243 kb on - strand, within Ga0059261_0838at 878.243 kb on - strand, within Ga0059261_0838at 878.243 kb on - strand, within Ga0059261_0838at 878.413 kb on + strand, within Ga0059261_0838at 878.413 kb on + strand, within Ga0059261_0838at 878.413 kb on + strand, within Ga0059261_0838at 878.414 kb on - strand, within Ga0059261_0838at 878.414 kb on - strand, within Ga0059261_0838at 878.414 kb on - strand, within Ga0059261_0838at 878.414 kb on - strand, within Ga0059261_0838at 878.431 kb on + strand, within Ga0059261_0838at 878.431 kb on + strand, within Ga0059261_0838at 878.431 kb on + strand, within Ga0059261_0838at 878.432 kb on - strand, within Ga0059261_0838at 878.530 kb on - strand, within Ga0059261_0838at 878.541 kb on + strand, within Ga0059261_0838at 878.542 kb on - strand, within Ga0059261_0838at 878.542 kb on - strand, within Ga0059261_0838at 878.591 kb on + strand, within Ga0059261_0838at 878.591 kb on + strand, within Ga0059261_0838at 878.591 kb on + strand, within Ga0059261_0838at 878.591 kb on + strand, within Ga0059261_0838at 878.592 kb on - strand, within Ga0059261_0838at 878.592 kb on - strand, within Ga0059261_0838at 878.592 kb on - strand, within Ga0059261_0838at 878.592 kb on - strand, within Ga0059261_0838at 878.592 kb on - strand, within Ga0059261_0838at 878.592 kb on - strand, within Ga0059261_0838at 878.592 kb on - strand, within Ga0059261_0838at 878.740 kb on + strand, within Ga0059261_0838at 878.740 kb on + strand, within Ga0059261_0838at 878.740 kb on + strand, within Ga0059261_0838

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.03 mg/ml
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874,839 + Ga0059261_0836 0.35 -0.9
874,839 + Ga0059261_0836 0.35 +0.1
874,839 + Ga0059261_0836 0.35 -0.1
874,839 + Ga0059261_0836 0.35 +0.2
874,840 - Ga0059261_0836 0.35 +0.0
874,840 - Ga0059261_0836 0.35 -0.5
874,840 - Ga0059261_0836 0.35 +0.2
874,902 + Ga0059261_0836 0.40 -0.6
874,902 + Ga0059261_0836 0.40 +0.7
874,902 + Ga0059261_0836 0.40 +0.3
874,903 - Ga0059261_0836 0.40 -0.2
874,913 + Ga0059261_0836 0.41 +0.3
874,913 + Ga0059261_0836 0.41 +0.1
874,914 - Ga0059261_0836 0.41 -0.8
874,983 + Ga0059261_0836 0.47 -2.3
874,983 + Ga0059261_0836 0.47 +0.2
874,984 - Ga0059261_0836 0.47 -0.7
874,984 - Ga0059261_0836 0.47 -0.8
875,169 + Ga0059261_0836 0.62 -1.1
875,169 + Ga0059261_0836 0.62 +0.5
875,169 + Ga0059261_0836 0.62 -0.5
875,169 + Ga0059261_0836 0.62 -0.4
875,169 + Ga0059261_0836 0.62 +0.3
875,169 + Ga0059261_0836 0.62 +0.0
875,169 + Ga0059261_0836 0.62 -0.2
875,169 + Ga0059261_0836 0.62 +0.2
875,169 + Ga0059261_0836 0.62 +0.0
875,169 + Ga0059261_0836 0.62 +0.2
875,170 - Ga0059261_0836 0.62 +0.3
875,170 - Ga0059261_0836 0.62 +0.6
875,170 - Ga0059261_0836 0.62 -0.3
875,170 - Ga0059261_0836 0.62 +0.1
875,170 - Ga0059261_0836 0.62 -1.1
875,253 + Ga0059261_0836 0.69 +0.5
875,350 + Ga0059261_0836 0.77 +1.2
875,351 - Ga0059261_0836 0.77 -0.4
875,351 - Ga0059261_0836 0.77 +1.1
875,351 - Ga0059261_0836 0.77 -0.2
875,351 - Ga0059261_0836 0.77 +0.1
875,490 + Ga0059261_0836 0.88 -1.4
875,491 - Ga0059261_0836 0.88 -0.6
875,491 - Ga0059261_0836 0.88 +0.4
875,491 - Ga0059261_0836 0.88 -0.4
875,616 + -0.1
875,616 + -0.2
875,616 + +0.2
875,617 - +0.2
875,617 - -0.4
875,617 - +0.7
875,650 + +1.5
875,650 + +0.0
876,110 + Ga0059261_0837 0.17 -0.4
876,111 - Ga0059261_0837 0.17 +0.9
876,327 + Ga0059261_0837 0.27 +1.0
876,327 + Ga0059261_0837 0.27 -0.3
876,327 + Ga0059261_0837 0.27 +0.4
876,327 + Ga0059261_0837 0.27 -0.7
876,328 - Ga0059261_0837 0.27 -1.6
876,328 - Ga0059261_0837 0.27 +0.3
876,328 - Ga0059261_0837 0.27 +0.1
876,328 - Ga0059261_0837 0.27 -0.7
876,498 + Ga0059261_0837 0.36 -0.4
876,499 - Ga0059261_0837 0.36 -0.4
876,784 - Ga0059261_0837 0.50 +0.0
876,784 - Ga0059261_0837 0.50 -0.1
876,906 + Ga0059261_0837 0.56 -0.6
876,906 + Ga0059261_0837 0.56 +0.6
876,914 + Ga0059261_0837 0.56 +1.2
876,914 + Ga0059261_0837 0.56 -0.4
876,914 + Ga0059261_0837 0.56 -0.5
876,914 + Ga0059261_0837 0.56 +0.3
876,914 + Ga0059261_0837 0.56 -0.7
876,914 + Ga0059261_0837 0.56 -0.6
876,914 + Ga0059261_0837 0.56 -0.3
876,914 + Ga0059261_0837 0.56 +0.5
876,914 + Ga0059261_0837 0.56 -0.9
876,914 + Ga0059261_0837 0.56 -0.5
876,915 - Ga0059261_0837 0.56 +0.6
876,915 - Ga0059261_0837 0.56 +0.3
876,993 + Ga0059261_0837 0.60 -0.9
876,993 + Ga0059261_0837 0.60 -0.2
876,993 + Ga0059261_0837 0.60 +1.2
876,993 + Ga0059261_0837 0.60 -0.2
876,993 + Ga0059261_0837 0.60 +0.4
876,994 - Ga0059261_0837 0.60 -0.6
876,994 - Ga0059261_0837 0.60 -0.6
876,994 - Ga0059261_0837 0.60 +1.4
876,994 - Ga0059261_0837 0.60 +0.5
877,189 - Ga0059261_0837 0.70 -0.0
877,189 - Ga0059261_0837 0.70 -0.1
877,379 + Ga0059261_0837 0.79 +0.0
877,437 + Ga0059261_0837 0.82 -0.5
877,437 + Ga0059261_0837 0.82 -0.3
877,437 + Ga0059261_0837 0.82 -0.1
877,437 + Ga0059261_0837 0.82 +0.9
877,437 + Ga0059261_0837 0.82 -0.1
877,437 + Ga0059261_0837 0.82 +0.0
877,437 + Ga0059261_0837 0.82 -0.5
877,438 - Ga0059261_0837 0.82 -0.4
877,438 - Ga0059261_0837 0.82 -0.3
877,438 - Ga0059261_0837 0.82 -1.6
877,438 - Ga0059261_0837 0.82 -0.1
877,443 + -1.1
877,444 - Ga0059261_0837 0.82 -0.8
877,444 - Ga0059261_0837 0.82 +0.1
877,444 - Ga0059261_0837 0.82 +0.2
877,566 + Ga0059261_0837 0.88 +0.3
877,566 + Ga0059261_0837 0.88 -0.8
877,566 + Ga0059261_0837 0.88 -0.3
877,566 + Ga0059261_0837 0.88 -0.1
877,566 + Ga0059261_0837 0.88 -0.1
877,566 + Ga0059261_0837 0.88 +0.5
877,567 - Ga0059261_0837 0.88 -0.4
877,630 + -0.1
877,647 + +0.2
877,647 + -0.6
877,647 + +0.7
877,647 + +0.8
877,647 + +0.2
877,647 + +0.9
877,647 + +0.5
877,647 + +0.4
877,647 + -0.4
877,647 + +0.0
877,648 - -0.6
877,648 - +0.9
877,648 - -1.0
877,648 - -0.6
877,648 - +0.0
877,648 - +0.1
877,648 - +0.1
877,648 - +0.4
877,648 - +0.1
877,648 - -1.4
877,648 - +0.8
877,648 - -0.4
877,648 - -0.3
877,648 - +1.9
877,648 - -0.2
877,653 + -0.2
877,668 + +0.4
878,127 + Ga0059261_0838 0.24 -0.2
878,127 + Ga0059261_0838 0.24 +0.5
878,128 - Ga0059261_0838 0.24 -0.9
878,242 + +0.9
878,242 + Ga0059261_0838 0.33 +0.0
878,242 + Ga0059261_0838 0.33 -0.1
878,242 + Ga0059261_0838 0.33 -1.2
878,242 + Ga0059261_0838 0.33 -0.2
878,243 - Ga0059261_0838 0.33 +0.2
878,243 - Ga0059261_0838 0.33 +1.9
878,243 - Ga0059261_0838 0.33 -0.1
878,243 - Ga0059261_0838 0.33 -0.2
878,413 + Ga0059261_0838 0.45 -1.3
878,413 + Ga0059261_0838 0.45 -1.4
878,413 + Ga0059261_0838 0.45 +0.2
878,414 - Ga0059261_0838 0.45 -1.2
878,414 - Ga0059261_0838 0.45 -0.6
878,414 - Ga0059261_0838 0.45 +1.8
878,414 - Ga0059261_0838 0.45 -0.2
878,431 + Ga0059261_0838 0.47 -0.2
878,431 + Ga0059261_0838 0.47 -0.4
878,431 + Ga0059261_0838 0.47 +0.6
878,432 - Ga0059261_0838 0.47 -0.7
878,530 - Ga0059261_0838 0.54 -0.8
878,541 + Ga0059261_0838 0.55 +0.4
878,542 - Ga0059261_0838 0.55 -0.3
878,542 - Ga0059261_0838 0.55 +0.0
878,591 + Ga0059261_0838 0.58 -1.0
878,591 + Ga0059261_0838 0.58 +0.3
878,591 + Ga0059261_0838 0.58 -1.7
878,591 + Ga0059261_0838 0.58 -0.4
878,592 - Ga0059261_0838 0.59 -0.9
878,592 - Ga0059261_0838 0.59 -1.2
878,592 - Ga0059261_0838 0.59 -0.4
878,592 - Ga0059261_0838 0.59 -0.0
878,592 - Ga0059261_0838 0.59 +1.1
878,592 - Ga0059261_0838 0.59 -0.2
878,592 - Ga0059261_0838 0.59 +0.1
878,740 + Ga0059261_0838 0.69 -0.9
878,740 + Ga0059261_0838 0.69 -0.6
878,740 + Ga0059261_0838 0.69 +0.2

Or see this region's nucleotide sequence