Experiment: Carbenicillin 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0415 and Ga0059261_0416 are separated by 236 nucleotides Ga0059261_0416 and Ga0059261_0417 overlap by 4 nucleotides Ga0059261_0417 and Ga0059261_0418 overlap by 9 nucleotides
Ga0059261_0415: Ga0059261_0415 - Bacterial regulatory proteins, gntR family, at 397,733 to 398,332
_0415
Ga0059261_0416: Ga0059261_0416 - Transglutaminase-like superfamily, at 398,569 to 399,276
_0416
Ga0059261_0417: Ga0059261_0417 - Asparagine synthase, at 399,273 to 401,009
_0417
Ga0059261_0418: Ga0059261_0418 - Dipeptidyl aminopeptidases/acylaminoacyl-peptidases, at 401,001 to 403,016
_0418
Position (kb) 399
400
401
402 Strain fitness (log2 ratio) -2
-1
0
1
2 at 398.325 kb on + strand at 398.325 kb on + strand at 398.325 kb on + strand at 398.325 kb on + strand at 398.325 kb on + strand at 398.325 kb on + strand at 398.325 kb on + strand at 398.325 kb on + strand at 398.326 kb on - strand at 398.326 kb on - strand at 398.352 kb on - strand at 398.376 kb on - strand at 398.386 kb on + strand at 398.403 kb on + strand at 398.403 kb on + strand at 398.642 kb on + strand, within Ga0059261_0416 at 398.642 kb on + strand, within Ga0059261_0416 at 398.642 kb on + strand, within Ga0059261_0416 at 398.643 kb on - strand, within Ga0059261_0416 at 398.699 kb on - strand, within Ga0059261_0416 at 398.741 kb on + strand, within Ga0059261_0416 at 398.742 kb on - strand, within Ga0059261_0416 at 398.742 kb on - strand, within Ga0059261_0416 at 398.754 kb on - strand, within Ga0059261_0416 at 399.127 kb on + strand, within Ga0059261_0416 at 399.127 kb on + strand, within Ga0059261_0416 at 399.128 kb on - strand, within Ga0059261_0416 at 399.128 kb on - strand, within Ga0059261_0416 at 399.128 kb on - strand, within Ga0059261_0416 at 399.174 kb on - strand, within Ga0059261_0416 at 399.272 kb on + strand at 399.272 kb on + strand at 399.273 kb on - strand at 399.288 kb on + strand at 399.340 kb on + strand at 399.340 kb on + strand at 399.340 kb on + strand at 399.340 kb on + strand at 399.340 kb on + strand at 399.341 kb on - strand at 399.341 kb on - strand at 399.341 kb on - strand at 399.341 kb on - strand at 399.341 kb on - strand at 399.341 kb on - strand at 399.341 kb on - strand at 399.383 kb on + strand at 399.383 kb on + strand at 399.384 kb on - strand at 399.384 kb on - strand at 399.384 kb on - strand at 399.537 kb on + strand, within Ga0059261_0417 at 399.538 kb on - strand, within Ga0059261_0417 at 399.538 kb on - strand, within Ga0059261_0417 at 399.538 kb on - strand, within Ga0059261_0417 at 399.538 kb on - strand, within Ga0059261_0417 at 399.549 kb on + strand, within Ga0059261_0417 at 399.550 kb on - strand, within Ga0059261_0417 at 399.551 kb on + strand, within Ga0059261_0417 at 399.551 kb on + strand, within Ga0059261_0417 at 399.551 kb on + strand, within Ga0059261_0417 at 399.551 kb on + strand, within Ga0059261_0417 at 399.551 kb on + strand, within Ga0059261_0417 at 399.551 kb on + strand at 399.551 kb on + strand, within Ga0059261_0417 at 399.552 kb on - strand, within Ga0059261_0417 at 399.552 kb on - strand, within Ga0059261_0417 at 399.552 kb on - strand, within Ga0059261_0417 at 399.651 kb on + strand, within Ga0059261_0417 at 399.651 kb on + strand, within Ga0059261_0417 at 399.651 kb on + strand, within Ga0059261_0417 at 399.651 kb on + strand, within Ga0059261_0417 at 399.652 kb on - strand, within Ga0059261_0417 at 399.652 kb on - strand, within Ga0059261_0417 at 399.652 kb on - strand, within Ga0059261_0417 at 399.652 kb on - strand, within Ga0059261_0417 at 399.652 kb on - strand, within Ga0059261_0417 at 399.652 kb on - strand, within Ga0059261_0417 at 399.652 kb on - strand, within Ga0059261_0417 at 399.652 kb on - strand, within Ga0059261_0417 at 399.652 kb on - strand, within Ga0059261_0417 at 399.652 kb on - strand, within Ga0059261_0417 at 399.652 kb on - strand, within Ga0059261_0417 at 399.652 kb on - strand, within Ga0059261_0417 at 399.652 kb on - strand, within Ga0059261_0417 at 399.652 kb on - strand, within Ga0059261_0417 at 399.652 kb on - strand, within Ga0059261_0417 at 400.002 kb on - strand, within Ga0059261_0417 at 400.012 kb on + strand, within Ga0059261_0417 at 400.012 kb on + strand, within Ga0059261_0417 at 400.086 kb on + strand, within Ga0059261_0417 at 400.086 kb on + strand, within Ga0059261_0417 at 400.086 kb on + strand, within Ga0059261_0417 at 400.087 kb on - strand, within Ga0059261_0417 at 400.087 kb on - strand, within Ga0059261_0417 at 400.087 kb on - strand, within Ga0059261_0417 at 400.087 kb on - strand, within Ga0059261_0417 at 400.263 kb on + strand, within Ga0059261_0417 at 400.263 kb on + strand, within Ga0059261_0417 at 400.263 kb on + strand, within Ga0059261_0417 at 400.263 kb on + strand, within Ga0059261_0417 at 400.263 kb on + strand, within Ga0059261_0417 at 400.263 kb on + strand, within Ga0059261_0417 at 400.263 kb on + strand, within Ga0059261_0417 at 400.264 kb on - strand, within Ga0059261_0417 at 400.264 kb on - strand, within Ga0059261_0417 at 400.264 kb on - strand, within Ga0059261_0417 at 400.264 kb on - strand, within Ga0059261_0417 at 400.475 kb on + strand, within Ga0059261_0417 at 400.476 kb on - strand, within Ga0059261_0417 at 400.612 kb on - strand, within Ga0059261_0417 at 400.905 kb on + strand at 400.905 kb on + strand at 400.905 kb on + strand at 400.905 kb on + strand at 400.905 kb on + strand at 400.906 kb on - strand at 400.906 kb on - strand at 400.906 kb on - strand at 400.906 kb on - strand at 400.906 kb on - strand at 400.906 kb on - strand at 400.944 kb on + strand at 400.944 kb on + strand at 400.944 kb on + strand at 400.944 kb on + strand at 400.944 kb on + strand at 400.944 kb on + strand at 400.944 kb on + strand at 400.945 kb on - strand at 400.945 kb on - strand at 400.945 kb on - strand at 400.945 kb on - strand at 400.945 kb on - strand at 400.945 kb on - strand at 400.945 kb on - strand at 401.041 kb on + strand at 401.041 kb on + strand at 401.116 kb on + strand at 401.116 kb on + strand at 401.117 kb on - strand at 401.143 kb on + strand at 401.143 kb on + strand at 401.143 kb on + strand at 401.143 kb on + strand at 401.143 kb on + strand at 401.143 kb on + strand at 401.144 kb on - strand at 401.144 kb on - strand at 401.144 kb on - strand at 401.144 kb on - strand at 401.144 kb on - strand at 401.144 kb on - strand at 401.144 kb on - strand at 401.144 kb on - strand at 401.161 kb on + strand at 401.161 kb on + strand at 401.358 kb on + strand, within Ga0059261_0418 at 401.358 kb on + strand, within Ga0059261_0418 at 401.358 kb on + strand, within Ga0059261_0418 at 401.358 kb on + strand, within Ga0059261_0418 at 401.359 kb on - strand, within Ga0059261_0418 at 401.359 kb on - strand, within Ga0059261_0418 at 401.359 kb on - strand, within Ga0059261_0418 at 401.359 kb on - strand, within Ga0059261_0418 at 401.359 kb on - strand, within Ga0059261_0418 at 401.359 kb on - strand, within Ga0059261_0418 at 401.359 kb on - strand, within Ga0059261_0418 at 401.359 kb on - strand, within Ga0059261_0418 at 401.398 kb on + strand, within Ga0059261_0418 at 401.398 kb on + strand, within Ga0059261_0418 at 401.399 kb on - strand, within Ga0059261_0418 at 401.399 kb on - strand, within Ga0059261_0418 at 401.399 kb on - strand, within Ga0059261_0418 at 401.399 kb on - strand, within Ga0059261_0418 at 401.401 kb on + strand, within Ga0059261_0418 at 401.401 kb on + strand, within Ga0059261_0418 at 401.401 kb on + strand, within Ga0059261_0418 at 401.401 kb on + strand, within Ga0059261_0418 at 401.402 kb on - strand, within Ga0059261_0418 at 401.402 kb on - strand at 401.402 kb on - strand, within Ga0059261_0418 at 401.402 kb on - strand, within Ga0059261_0418 at 401.585 kb on - strand, within Ga0059261_0418 at 401.585 kb on - strand, within Ga0059261_0418 at 401.585 kb on - strand, within Ga0059261_0418 at 401.585 kb on - strand, within Ga0059261_0418 at 401.585 kb on - strand, within Ga0059261_0418 at 401.704 kb on + strand, within Ga0059261_0418 at 401.705 kb on - strand, within Ga0059261_0418 at 401.705 kb on - strand, within Ga0059261_0418 at 401.719 kb on + strand, within Ga0059261_0418 at 401.719 kb on + strand, within Ga0059261_0418 at 401.719 kb on + strand, within Ga0059261_0418 at 401.719 kb on + strand, within Ga0059261_0418 at 401.719 kb on + strand, within Ga0059261_0418 at 401.719 kb on + strand at 401.719 kb on + strand, within Ga0059261_0418 at 401.719 kb on + strand, within Ga0059261_0418 at 401.719 kb on + strand, within Ga0059261_0418 at 401.719 kb on + strand, within Ga0059261_0418 at 401.720 kb on - strand, within Ga0059261_0418 at 401.720 kb on - strand, within Ga0059261_0418 at 401.720 kb on - strand, within Ga0059261_0418 at 401.720 kb on - strand, within Ga0059261_0418 at 401.720 kb on - strand, within Ga0059261_0418 at 401.720 kb on - strand, within Ga0059261_0418 at 401.720 kb on - strand, within Ga0059261_0418 at 401.720 kb on - strand, within Ga0059261_0418 at 401.720 kb on - strand, within Ga0059261_0418 at 401.720 kb on - strand, within Ga0059261_0418 at 401.722 kb on + strand, within Ga0059261_0418 at 401.722 kb on + strand, within Ga0059261_0418 at 401.722 kb on + strand, within Ga0059261_0418 at 401.722 kb on + strand, within Ga0059261_0418 at 401.722 kb on + strand, within Ga0059261_0418 at 401.722 kb on + strand, within Ga0059261_0418 at 401.722 kb on + strand, within Ga0059261_0418 at 401.722 kb on + strand, within Ga0059261_0418 at 401.722 kb on + strand, within Ga0059261_0418 at 401.723 kb on - strand, within Ga0059261_0418 at 401.723 kb on - strand, within Ga0059261_0418 at 401.723 kb on - strand, within Ga0059261_0418 at 401.723 kb on - strand at 401.723 kb on - strand, within Ga0059261_0418 at 401.723 kb on - strand, within Ga0059261_0418 at 401.723 kb on - strand, within Ga0059261_0418
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.03 mg/ml remove 398,325 + -0.5 398,325 + -0.3 398,325 + -0.2 398,325 + +0.4 398,325 + -1.2 398,325 + +0.7 398,325 + +1.0 398,325 + -1.2 398,326 - +0.0 398,326 - +0.2 398,352 - -0.5 398,376 - +0.0 398,386 + +0.6 398,403 + +0.3 398,403 + -0.2 398,642 + Ga0059261_0416 0.10 +0.0 398,642 + Ga0059261_0416 0.10 -1.2 398,642 + Ga0059261_0416 0.10 -0.2 398,643 - Ga0059261_0416 0.10 +0.5 398,699 - Ga0059261_0416 0.18 -0.5 398,741 + Ga0059261_0416 0.24 +0.4 398,742 - Ga0059261_0416 0.24 +1.6 398,742 - Ga0059261_0416 0.24 -0.2 398,754 - Ga0059261_0416 0.26 +0.2 399,127 + Ga0059261_0416 0.79 +0.2 399,127 + Ga0059261_0416 0.79 +0.2 399,128 - Ga0059261_0416 0.79 -0.1 399,128 - Ga0059261_0416 0.79 +1.4 399,128 - Ga0059261_0416 0.79 +0.0 399,174 - Ga0059261_0416 0.85 +0.8 399,272 + -0.9 399,272 + -0.0 399,273 - +0.6 399,288 + -0.0 399,340 + +0.4 399,340 + -0.2 399,340 + -1.0 399,340 + +0.1 399,340 + +0.4 399,341 - +0.5 399,341 - -0.6 399,341 - +0.3 399,341 - -0.4 399,341 - -0.1 399,341 - +0.8 399,341 - +0.0 399,383 + +1.0 399,383 + -0.0 399,384 - +0.0 399,384 - +0.2 399,384 - -0.4 399,537 + Ga0059261_0417 0.15 -0.2 399,538 - Ga0059261_0417 0.15 +0.6 399,538 - Ga0059261_0417 0.15 +1.0 399,538 - Ga0059261_0417 0.15 +0.1 399,538 - Ga0059261_0417 0.15 +0.3 399,549 + Ga0059261_0417 0.16 -0.1 399,550 - Ga0059261_0417 0.16 -0.0 399,551 + Ga0059261_0417 0.16 -0.5 399,551 + Ga0059261_0417 0.16 -0.7 399,551 + Ga0059261_0417 0.16 +1.2 399,551 + Ga0059261_0417 0.16 -1.2 399,551 + Ga0059261_0417 0.16 -1.0 399,551 + +1.8 399,551 + Ga0059261_0417 0.16 -1.7 399,552 - Ga0059261_0417 0.16 -0.3 399,552 - Ga0059261_0417 0.16 -0.5 399,552 - Ga0059261_0417 0.16 -1.6 399,651 + Ga0059261_0417 0.22 +0.4 399,651 + Ga0059261_0417 0.22 -2.2 399,651 + Ga0059261_0417 0.22 -0.8 399,651 + Ga0059261_0417 0.22 -0.9 399,652 - Ga0059261_0417 0.22 -0.6 399,652 - Ga0059261_0417 0.22 -0.6 399,652 - Ga0059261_0417 0.22 -0.9 399,652 - Ga0059261_0417 0.22 +0.8 399,652 - Ga0059261_0417 0.22 -0.4 399,652 - Ga0059261_0417 0.22 -0.2 399,652 - Ga0059261_0417 0.22 -1.2 399,652 - Ga0059261_0417 0.22 -0.2 399,652 - Ga0059261_0417 0.22 +0.1 399,652 - Ga0059261_0417 0.22 +0.6 399,652 - Ga0059261_0417 0.22 +0.7 399,652 - Ga0059261_0417 0.22 +0.4 399,652 - Ga0059261_0417 0.22 +0.4 399,652 - Ga0059261_0417 0.22 -1.1 399,652 - Ga0059261_0417 0.22 -0.4 400,002 - Ga0059261_0417 0.42 -1.2 400,012 + Ga0059261_0417 0.43 +0.2 400,012 + Ga0059261_0417 0.43 -0.5 400,086 + Ga0059261_0417 0.47 -1.2 400,086 + Ga0059261_0417 0.47 +0.4 400,086 + Ga0059261_0417 0.47 +0.0 400,087 - Ga0059261_0417 0.47 +0.7 400,087 - Ga0059261_0417 0.47 +0.2 400,087 - Ga0059261_0417 0.47 +0.2 400,087 - Ga0059261_0417 0.47 -1.2 400,263 + Ga0059261_0417 0.57 +1.2 400,263 + Ga0059261_0417 0.57 +0.8 400,263 + Ga0059261_0417 0.57 -0.9 400,263 + Ga0059261_0417 0.57 -0.2 400,263 + Ga0059261_0417 0.57 +0.4 400,263 + Ga0059261_0417 0.57 +0.4 400,263 + Ga0059261_0417 0.57 +0.2 400,264 - Ga0059261_0417 0.57 +0.5 400,264 - Ga0059261_0417 0.57 +0.0 400,264 - Ga0059261_0417 0.57 -0.2 400,264 - Ga0059261_0417 0.57 -0.3 400,475 + Ga0059261_0417 0.69 -0.2 400,476 - Ga0059261_0417 0.69 -0.2 400,612 - Ga0059261_0417 0.77 +0.4 400,905 + +0.1 400,905 + -2.5 400,905 + +0.2 400,905 + -0.2 400,905 + +0.0 400,906 - -0.7 400,906 - -0.4 400,906 - +0.0 400,906 - -0.2 400,906 - +1.4 400,906 - +0.3 400,944 + -0.2 400,944 + +1.2 400,944 + +1.8 400,944 + +0.5 400,944 + +0.8 400,944 + +0.8 400,944 + -0.3 400,945 - -1.0 400,945 - -0.3 400,945 - +0.9 400,945 - +0.4 400,945 - -0.5 400,945 - +0.8 400,945 - +0.6 401,041 + -0.3 401,041 + -0.3 401,116 + +1.1 401,116 + +0.3 401,117 - +0.4 401,143 + +0.2 401,143 + -1.2 401,143 + +1.4 401,143 + +0.3 401,143 + -0.8 401,143 + +0.4 401,144 - +0.1 401,144 - +0.2 401,144 - +0.3 401,144 - -0.1 401,144 - -0.0 401,144 - +0.8 401,144 - +0.1 401,144 - +0.5 401,161 + -0.4 401,161 + -1.2 401,358 + Ga0059261_0418 0.18 +0.1 401,358 + Ga0059261_0418 0.18 +0.4 401,358 + Ga0059261_0418 0.18 -0.1 401,358 + Ga0059261_0418 0.18 -0.0 401,359 - Ga0059261_0418 0.18 +0.1 401,359 - Ga0059261_0418 0.18 -0.3 401,359 - Ga0059261_0418 0.18 +0.3 401,359 - Ga0059261_0418 0.18 -0.0 401,359 - Ga0059261_0418 0.18 +0.2 401,359 - Ga0059261_0418 0.18 -0.4 401,359 - Ga0059261_0418 0.18 -0.3 401,359 - Ga0059261_0418 0.18 +0.2 401,398 + Ga0059261_0418 0.20 +0.2 401,398 + Ga0059261_0418 0.20 +0.2 401,399 - Ga0059261_0418 0.20 -0.1 401,399 - Ga0059261_0418 0.20 +0.3 401,399 - Ga0059261_0418 0.20 +0.3 401,399 - Ga0059261_0418 0.20 +0.4 401,401 + Ga0059261_0418 0.20 -0.2 401,401 + Ga0059261_0418 0.20 -0.3 401,401 + Ga0059261_0418 0.20 +0.3 401,401 + Ga0059261_0418 0.20 -1.0 401,402 - Ga0059261_0418 0.20 +1.0 401,402 - -0.7 401,402 - Ga0059261_0418 0.20 -0.4 401,402 - Ga0059261_0418 0.20 -0.1 401,585 - Ga0059261_0418 0.29 -0.3 401,585 - Ga0059261_0418 0.29 -1.0 401,585 - Ga0059261_0418 0.29 +0.5 401,585 - Ga0059261_0418 0.29 -1.0 401,585 - Ga0059261_0418 0.29 +0.2 401,704 + Ga0059261_0418 0.35 -0.3 401,705 - Ga0059261_0418 0.35 +0.2 401,705 - Ga0059261_0418 0.35 +0.5 401,719 + Ga0059261_0418 0.36 -1.7 401,719 + Ga0059261_0418 0.36 -0.2 401,719 + Ga0059261_0418 0.36 -0.1 401,719 + Ga0059261_0418 0.36 +0.2 401,719 + Ga0059261_0418 0.36 +0.7 401,719 + -0.2 401,719 + Ga0059261_0418 0.36 -0.2 401,719 + Ga0059261_0418 0.36 -0.6 401,719 + Ga0059261_0418 0.36 -1.0 401,719 + Ga0059261_0418 0.36 -0.6 401,720 - Ga0059261_0418 0.36 +0.1 401,720 - Ga0059261_0418 0.36 -0.4 401,720 - Ga0059261_0418 0.36 -0.7 401,720 - Ga0059261_0418 0.36 +0.2 401,720 - Ga0059261_0418 0.36 -0.3 401,720 - Ga0059261_0418 0.36 -1.4 401,720 - Ga0059261_0418 0.36 +1.0 401,720 - Ga0059261_0418 0.36 -0.3 401,720 - Ga0059261_0418 0.36 +0.2 401,720 - Ga0059261_0418 0.36 -0.7 401,722 + Ga0059261_0418 0.36 -1.5 401,722 + Ga0059261_0418 0.36 +0.2 401,722 + Ga0059261_0418 0.36 +0.7 401,722 + Ga0059261_0418 0.36 -0.2 401,722 + Ga0059261_0418 0.36 +0.4 401,722 + Ga0059261_0418 0.36 -1.4 401,722 + Ga0059261_0418 0.36 -0.0 401,722 + Ga0059261_0418 0.36 -1.1 401,722 + Ga0059261_0418 0.36 -0.0 401,723 - Ga0059261_0418 0.36 -1.2 401,723 - Ga0059261_0418 0.36 -0.2 401,723 - Ga0059261_0418 0.36 -1.7 401,723 - +0.4 401,723 - Ga0059261_0418 0.36 +0.4 401,723 - Ga0059261_0418 0.36 +0.6 401,723 - Ga0059261_0418 0.36 -1.4
Or see this region's nucleotide sequence