Experiment: PYE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00459 and CCNA_00460 are separated by 461 nucleotides CCNA_00460 and CCNA_03921 are separated by 853 nucleotides
CCNA_00459: CCNA_00459 - Na+/H+ antiporter nhaA, at 471,542 to 472,783
_00459
CCNA_00460: CCNA_00460 - hypothetical protein, at 473,245 to 473,400
_00460
CCNA_03921: CCNA_03921 - UDP-glucose 6-dehydrogenase related protein, at 474,254 to 474,409
_03921
Position (kb) 473
474 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 472.248 kb on - strand, within CCNA_00459 at 472.248 kb on - strand, within CCNA_00459 at 472.265 kb on + strand, within CCNA_00459 at 472.265 kb on - strand, within CCNA_00459 at 472.276 kb on - strand, within CCNA_00459 at 472.325 kb on - strand, within CCNA_00459 at 472.329 kb on + strand, within CCNA_00459 at 472.396 kb on + strand, within CCNA_00459 at 472.402 kb on + strand, within CCNA_00459 at 472.402 kb on + strand, within CCNA_00459 at 472.422 kb on + strand, within CCNA_00459 at 472.428 kb on + strand, within CCNA_00459 at 472.435 kb on - strand, within CCNA_00459 at 472.438 kb on + strand, within CCNA_00459 at 472.438 kb on + strand, within CCNA_00459 at 472.470 kb on - strand, within CCNA_00459 at 472.470 kb on - strand, within CCNA_00459 at 472.490 kb on - strand, within CCNA_00459 at 472.531 kb on + strand, within CCNA_00459 at 472.531 kb on + strand, within CCNA_00459 at 472.531 kb on + strand, within CCNA_00459 at 472.531 kb on + strand, within CCNA_00459 at 472.531 kb on + strand, within CCNA_00459 at 472.531 kb on + strand, within CCNA_00459 at 472.531 kb on + strand, within CCNA_00459 at 472.539 kb on - strand, within CCNA_00459 at 472.539 kb on - strand, within CCNA_00459 at 472.539 kb on - strand, within CCNA_00459 at 472.541 kb on - strand, within CCNA_00459 at 472.544 kb on + strand, within CCNA_00459 at 472.547 kb on - strand, within CCNA_00459 at 472.552 kb on - strand, within CCNA_00459 at 472.595 kb on - strand, within CCNA_00459 at 472.613 kb on + strand, within CCNA_00459 at 472.613 kb on - strand at 472.661 kb on + strand at 472.661 kb on + strand at 472.669 kb on - strand at 472.669 kb on - strand at 472.669 kb on - strand at 472.669 kb on - strand at 472.669 kb on - strand at 472.684 kb on - strand at 472.698 kb on + strand at 472.730 kb on + strand at 472.730 kb on + strand at 472.738 kb on - strand at 472.748 kb on + strand at 472.778 kb on + strand at 472.784 kb on + strand at 472.813 kb on - strand at 472.875 kb on + strand at 472.889 kb on - strand at 472.960 kb on - strand at 472.977 kb on + strand at 472.992 kb on + strand at 472.992 kb on + strand at 472.999 kb on + strand at 473.000 kb on - strand at 473.047 kb on + strand at 473.125 kb on + strand at 473.161 kb on + strand at 473.169 kb on - strand at 473.205 kb on + strand at 473.205 kb on + strand at 473.205 kb on - strand at 473.227 kb on - strand at 473.227 kb on - strand at 473.234 kb on - strand at 473.250 kb on - strand at 473.252 kb on + strand at 473.260 kb on - strand at 473.275 kb on + strand, within CCNA_00460 at 473.275 kb on + strand, within CCNA_00460 at 473.275 kb on + strand, within CCNA_00460 at 473.275 kb on + strand, within CCNA_00460 at 473.275 kb on + strand, within CCNA_00460 at 473.275 kb on + strand, within CCNA_00460 at 473.278 kb on - strand, within CCNA_00460 at 473.283 kb on - strand, within CCNA_00460 at 473.283 kb on - strand, within CCNA_00460 at 473.283 kb on - strand, within CCNA_00460 at 473.304 kb on + strand, within CCNA_00460 at 473.309 kb on + strand, within CCNA_00460 at 473.309 kb on + strand, within CCNA_00460 at 473.309 kb on + strand, within CCNA_00460 at 473.317 kb on - strand, within CCNA_00460 at 473.319 kb on + strand, within CCNA_00460 at 473.322 kb on - strand, within CCNA_00460 at 473.324 kb on + strand, within CCNA_00460 at 473.327 kb on - strand, within CCNA_00460 at 473.327 kb on - strand, within CCNA_00460 at 473.345 kb on + strand, within CCNA_00460 at 473.345 kb on + strand, within CCNA_00460 at 473.345 kb on + strand, within CCNA_00460 at 473.345 kb on + strand, within CCNA_00460 at 473.353 kb on - strand, within CCNA_00460 at 473.353 kb on - strand, within CCNA_00460 at 473.388 kb on - strand at 473.392 kb on + strand at 473.474 kb on - strand at 473.501 kb on + strand at 473.501 kb on + strand at 473.509 kb on - strand at 473.563 kb on - strand at 473.573 kb on + strand at 473.586 kb on + strand at 473.588 kb on + strand at 473.596 kb on - strand at 473.637 kb on + strand at 473.656 kb on + strand at 473.664 kb on - strand at 473.665 kb on - strand at 473.669 kb on - strand at 473.885 kb on + strand at 473.898 kb on + strand at 473.939 kb on - strand at 473.942 kb on + strand at 473.943 kb on + strand at 473.950 kb on + strand at 473.951 kb on - strand at 473.951 kb on - strand at 473.977 kb on + strand at 473.977 kb on + strand at 473.977 kb on + strand at 473.977 kb on + strand at 473.977 kb on + strand at 473.977 kb on + strand at 473.985 kb on - strand at 473.985 kb on - strand at 474.016 kb on - strand at 474.016 kb on - strand at 474.016 kb on - strand at 474.016 kb on - strand at 474.018 kb on + strand at 474.021 kb on - strand at 474.026 kb on - strand at 474.029 kb on + strand at 474.054 kb on + strand at 474.073 kb on + strand at 474.073 kb on + strand at 474.076 kb on - strand at 474.081 kb on - strand at 474.114 kb on + strand at 474.122 kb on - strand at 474.143 kb on - strand at 474.186 kb on + strand at 474.236 kb on + strand at 474.239 kb on - strand at 474.278 kb on + strand, within CCNA_03921 at 474.278 kb on + strand, within CCNA_03921 at 474.278 kb on + strand, within CCNA_03921 at 474.286 kb on - strand, within CCNA_03921 at 474.300 kb on - strand, within CCNA_03921 at 474.300 kb on - strand, within CCNA_03921 at 474.326 kb on + strand, within CCNA_03921 at 474.341 kb on + strand, within CCNA_03921 at 474.341 kb on + strand, within CCNA_03921
Per-strain Table
Position Strand Gene LocusTag Fraction PYE remove 472,248 - CCNA_00459 0.57 +0.4 472,248 - CCNA_00459 0.57 -0.7 472,265 + CCNA_00459 0.58 +2.0 472,265 - CCNA_00459 0.58 -1.9 472,276 - CCNA_00459 0.59 +0.7 472,325 - CCNA_00459 0.63 -1.4 472,329 + CCNA_00459 0.63 +1.5 472,396 + CCNA_00459 0.69 +1.4 472,402 + CCNA_00459 0.69 +1.5 472,402 + CCNA_00459 0.69 +1.3 472,422 + CCNA_00459 0.71 +0.8 472,428 + CCNA_00459 0.71 +1.5 472,435 - CCNA_00459 0.72 -0.2 472,438 + CCNA_00459 0.72 +1.7 472,438 + CCNA_00459 0.72 +2.5 472,470 - CCNA_00459 0.75 -0.1 472,470 - CCNA_00459 0.75 -0.9 472,490 - CCNA_00459 0.76 -0.9 472,531 + CCNA_00459 0.80 +1.8 472,531 + CCNA_00459 0.80 +1.4 472,531 + CCNA_00459 0.80 +2.0 472,531 + CCNA_00459 0.80 +0.9 472,531 + CCNA_00459 0.80 +1.9 472,531 + CCNA_00459 0.80 +1.0 472,531 + CCNA_00459 0.80 +2.4 472,539 - CCNA_00459 0.80 +0.1 472,539 - CCNA_00459 0.80 +1.4 472,539 - CCNA_00459 0.80 +0.1 472,541 - CCNA_00459 0.80 -0.9 472,544 + CCNA_00459 0.81 +2.1 472,547 - CCNA_00459 0.81 -0.3 472,552 - CCNA_00459 0.81 +0.1 472,595 - CCNA_00459 0.85 -1.8 472,613 + CCNA_00459 0.86 -0.0 472,613 - +0.4 472,661 + +1.5 472,661 + +1.6 472,669 - -0.4 472,669 - -2.2 472,669 - +0.4 472,669 - -0.4 472,669 - -0.6 472,684 - +1.4 472,698 + +1.0 472,730 + +1.2 472,730 + +0.7 472,738 - +0.1 472,748 + +0.7 472,778 + +0.5 472,784 + +0.5 472,813 - -0.2 472,875 + +1.5 472,889 - -0.9 472,960 - -0.2 472,977 + +0.9 472,992 + +1.4 472,992 + +0.8 472,999 + +0.5 473,000 - -2.0 473,047 + +1.1 473,125 + -0.5 473,161 + +1.0 473,169 - -0.2 473,205 + -0.0 473,205 + -0.2 473,205 - +0.4 473,227 - -0.6 473,227 - +0.1 473,234 - +1.0 473,250 - -1.2 473,252 + +0.8 473,260 - +0.6 473,275 + CCNA_00460 0.19 -0.0 473,275 + CCNA_00460 0.19 -0.2 473,275 + CCNA_00460 0.19 -1.9 473,275 + CCNA_00460 0.19 -1.5 473,275 + CCNA_00460 0.19 -0.4 473,275 + CCNA_00460 0.19 +1.4 473,278 - CCNA_00460 0.21 -0.0 473,283 - CCNA_00460 0.24 -1.3 473,283 - CCNA_00460 0.24 +0.8 473,283 - CCNA_00460 0.24 +0.4 473,304 + CCNA_00460 0.38 -0.2 473,309 + CCNA_00460 0.41 -1.4 473,309 + CCNA_00460 0.41 -0.1 473,309 + CCNA_00460 0.41 -2.8 473,317 - CCNA_00460 0.46 -1.0 473,319 + CCNA_00460 0.47 -0.9 473,322 - CCNA_00460 0.49 -0.9 473,324 + CCNA_00460 0.51 +0.2 473,327 - CCNA_00460 0.53 +0.2 473,327 - CCNA_00460 0.53 -1.1 473,345 + CCNA_00460 0.64 -0.3 473,345 + CCNA_00460 0.64 +1.8 473,345 + CCNA_00460 0.64 +0.6 473,345 + CCNA_00460 0.64 -0.6 473,353 - CCNA_00460 0.69 -1.2 473,353 - CCNA_00460 0.69 -1.7 473,388 - +0.7 473,392 + -1.3 473,474 - +0.8 473,501 + -0.4 473,501 + -0.5 473,509 - -2.6 473,563 - -0.2 473,573 + +0.5 473,586 + +0.8 473,588 + +0.5 473,596 - -1.4 473,637 + +0.6 473,656 + +1.0 473,664 - -0.2 473,665 - -0.2 473,669 - -0.4 473,885 + +1.0 473,898 + +1.4 473,939 - +0.4 473,942 + +0.8 473,943 + -0.1 473,950 + +3.0 473,951 - -1.2 473,951 - -2.2 473,977 + +0.4 473,977 + -0.2 473,977 + -1.4 473,977 + -0.3 473,977 + +1.2 473,977 + +0.7 473,985 - -1.4 473,985 - +0.8 474,016 - -0.8 474,016 - -1.4 474,016 - -0.9 474,016 - -0.2 474,018 + +0.4 474,021 - +1.4 474,026 - -0.6 474,029 + +1.7 474,054 + +0.3 474,073 + +0.9 474,073 + -0.1 474,076 - -0.8 474,081 - -1.4 474,114 + +0.4 474,122 - -0.8 474,143 - -0.9 474,186 + -0.8 474,236 + +1.0 474,239 - +0.4 474,278 + CCNA_03921 0.15 +1.4 474,278 + CCNA_03921 0.15 -0.1 474,278 + CCNA_03921 0.15 -0.4 474,286 - CCNA_03921 0.21 -0.1 474,300 - CCNA_03921 0.29 -1.9 474,300 - CCNA_03921 0.29 +0.4 474,326 + CCNA_03921 0.46 +1.3 474,341 + CCNA_03921 0.56 +0.6 474,341 + CCNA_03921 0.56 +0.2
Or see this region's nucleotide sequence