Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00505

Experiment: D-Trehalose 20mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS00500 and CA265_RS00505 are separated by 108 nucleotidesCA265_RS00505 and CA265_RS00510 are separated by 147 nucleotides CA265_RS00500: CA265_RS00500 - efflux transporter periplasmic adaptor subunit, at 110,669 to 111,841 _RS00500 CA265_RS00505: CA265_RS00505 - xylose isomerase, at 111,950 to 112,795 _RS00505 CA265_RS00510: CA265_RS00510 - 6-phosphogluconate dehydrogenase, at 112,943 to 113,791 _RS00510 Position (kb) 111 112 113Strain fitness (log2 ratio) -2 -1 0 1 2at 110.954 kb on - strand, within CA265_RS00500at 110.954 kb on - strand, within CA265_RS00500at 111.047 kb on - strand, within CA265_RS00500at 111.257 kb on + strand, within CA265_RS00500at 111.258 kb on - strand, within CA265_RS00500at 111.300 kb on + strand, within CA265_RS00500at 111.301 kb on - strand, within CA265_RS00500at 111.370 kb on + strand, within CA265_RS00500at 111.375 kb on + strand, within CA265_RS00500at 111.533 kb on - strand, within CA265_RS00500at 111.554 kb on + strand, within CA265_RS00500at 111.591 kb on + strand, within CA265_RS00500at 111.592 kb on - strand, within CA265_RS00500at 111.731 kb on - strandat 111.802 kb on + strandat 111.803 kb on - strandat 111.840 kb on - strandat 111.870 kb on + strandat 111.882 kb on + strandat 111.906 kb on + strandat 111.921 kb on - strandat 112.150 kb on - strand, within CA265_RS00505at 112.155 kb on - strand, within CA265_RS00505at 112.187 kb on - strand, within CA265_RS00505at 112.193 kb on - strand, within CA265_RS00505at 112.207 kb on + strand, within CA265_RS00505at 112.238 kb on - strand, within CA265_RS00505at 112.268 kb on + strand, within CA265_RS00505at 112.268 kb on + strand, within CA265_RS00505at 112.269 kb on - strand, within CA265_RS00505at 112.279 kb on + strand, within CA265_RS00505at 112.280 kb on - strand, within CA265_RS00505at 112.367 kb on + strand, within CA265_RS00505at 112.368 kb on - strand, within CA265_RS00505at 112.368 kb on - strand, within CA265_RS00505at 112.438 kb on - strand, within CA265_RS00505at 112.463 kb on - strand, within CA265_RS00505at 112.517 kb on - strand, within CA265_RS00505at 112.596 kb on + strand, within CA265_RS00505at 112.619 kb on - strand, within CA265_RS00505at 112.747 kb on - strandat 112.747 kb on - strandat 112.747 kb on - strandat 112.854 kb on + strandat 112.855 kb on - strandat 112.942 kb on + strandat 112.984 kb on + strandat 113.157 kb on + strand, within CA265_RS00510at 113.158 kb on - strand, within CA265_RS00510at 113.158 kb on - strand, within CA265_RS00510at 113.209 kb on + strand, within CA265_RS00510at 113.261 kb on - strand, within CA265_RS00510at 113.269 kb on + strand, within CA265_RS00510at 113.270 kb on - strand, within CA265_RS00510at 113.270 kb on - strand, within CA265_RS00510at 113.273 kb on + strand, within CA265_RS00510at 113.274 kb on - strand, within CA265_RS00510at 113.644 kb on + strand, within CA265_RS00510at 113.645 kb on - strand, within CA265_RS00510at 113.716 kb on - strandat 113.728 kb on + strandat 113.770 kb on - strandat 113.770 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose 20mM (C)
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110,954 - CA265_RS00500 0.24 -0.2
110,954 - CA265_RS00500 0.24 -0.3
111,047 - CA265_RS00500 0.32 -0.8
111,257 + CA265_RS00500 0.50 -2.5
111,258 - CA265_RS00500 0.50 -0.9
111,300 + CA265_RS00500 0.54 -0.9
111,301 - CA265_RS00500 0.54 +1.0
111,370 + CA265_RS00500 0.60 -0.1
111,375 + CA265_RS00500 0.60 +0.0
111,533 - CA265_RS00500 0.74 +0.3
111,554 + CA265_RS00500 0.75 +0.0
111,591 + CA265_RS00500 0.79 +0.8
111,592 - CA265_RS00500 0.79 -0.0
111,731 - +0.3
111,802 + -1.5
111,803 - +0.3
111,840 - +1.3
111,870 + -0.8
111,882 + -0.6
111,906 + -0.7
111,921 - +0.0
112,150 - CA265_RS00505 0.24 -1.1
112,155 - CA265_RS00505 0.24 +0.2
112,187 - CA265_RS00505 0.28 +2.2
112,193 - CA265_RS00505 0.29 -0.1
112,207 + CA265_RS00505 0.30 +2.1
112,238 - CA265_RS00505 0.34 -0.0
112,268 + CA265_RS00505 0.38 -0.1
112,268 + CA265_RS00505 0.38 +1.2
112,269 - CA265_RS00505 0.38 -1.8
112,279 + CA265_RS00505 0.39 -0.2
112,280 - CA265_RS00505 0.39 +0.6
112,367 + CA265_RS00505 0.49 +0.8
112,368 - CA265_RS00505 0.49 +0.2
112,368 - CA265_RS00505 0.49 -0.8
112,438 - CA265_RS00505 0.58 +0.0
112,463 - CA265_RS00505 0.61 +0.4
112,517 - CA265_RS00505 0.67 +2.0
112,596 + CA265_RS00505 0.76 +2.1
112,619 - CA265_RS00505 0.79 +0.3
112,747 - -0.8
112,747 - -2.1
112,747 - +0.7
112,854 + -0.6
112,855 - -0.8
112,942 + -0.6
112,984 + +0.8
113,157 + CA265_RS00510 0.25 -0.1
113,158 - CA265_RS00510 0.25 +0.2
113,158 - CA265_RS00510 0.25 +0.7
113,209 + CA265_RS00510 0.31 +1.8
113,261 - CA265_RS00510 0.37 -1.2
113,269 + CA265_RS00510 0.38 +0.3
113,270 - CA265_RS00510 0.39 -2.0
113,270 - CA265_RS00510 0.39 +1.5
113,273 + CA265_RS00510 0.39 -1.4
113,274 - CA265_RS00510 0.39 -1.6
113,644 + CA265_RS00510 0.83 +0.6
113,645 - CA265_RS00510 0.83 -0.2
113,716 - +0.5
113,728 + +2.0
113,770 - -0.4
113,770 - +0.6

Or see this region's nucleotide sequence