Experiment: Bacitracin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29215 and AO356_29220 overlap by 4 nucleotides AO356_29220 and AO356_29225 are separated by 80 nucleotides AO356_29225 and AO356_29230 are separated by 194 nucleotides
AO356_29215: AO356_29215 - dehydrogenase, at 6,794,962 to 6,795,984
_29215
AO356_29220: AO356_29220 - hydroxypyruvate isomerase, at 6,795,981 to 6,796,772
_29220
AO356_29225: AO356_29225 - rhizopine-binding protein, at 6,796,853 to 6,797,779
_29225
AO356_29230: AO356_29230 - porin, at 6,797,974 to 6,799,236
_29230
Position (kb)
6796
6797
6798 Strain fitness (log2 ratio)
-1
0
1 at 6795.992 kb on - strand at 6796.090 kb on + strand, within AO356_29220 at 6796.419 kb on - strand, within AO356_29220 at 6796.522 kb on - strand, within AO356_29220 at 6796.822 kb on + strand at 6796.822 kb on + strand at 6796.967 kb on + strand, within AO356_29225 at 6796.968 kb on - strand, within AO356_29225 at 6796.968 kb on - strand, within AO356_29225 at 6796.968 kb on - strand, within AO356_29225 at 6796.968 kb on - strand, within AO356_29225 at 6797.175 kb on - strand, within AO356_29225 at 6797.771 kb on + strand at 6797.771 kb on + strand at 6797.777 kb on + strand at 6797.778 kb on - strand at 6797.778 kb on - strand at 6797.790 kb on + strand at 6797.841 kb on - strand at 6797.910 kb on - strand at 6797.976 kb on - strand at 6797.976 kb on - strand at 6797.988 kb on + strand at 6797.988 kb on + strand at 6797.989 kb on - strand at 6797.989 kb on - strand at 6797.989 kb on - strand at 6798.030 kb on - strand at 6798.098 kb on + strand at 6798.098 kb on + strand at 6798.098 kb on + strand at 6798.098 kb on + strand at 6798.099 kb on - strand at 6798.099 kb on - strand at 6798.099 kb on - strand at 6798.099 kb on - strand at 6798.099 kb on - strand at 6798.103 kb on - strand, within AO356_29230 at 6798.103 kb on - strand, within AO356_29230 at 6798.209 kb on + strand, within AO356_29230 at 6798.210 kb on - strand, within AO356_29230 at 6798.210 kb on - strand, within AO356_29230 at 6798.263 kb on + strand, within AO356_29230 at 6798.298 kb on - strand, within AO356_29230 at 6798.329 kb on + strand, within AO356_29230 at 6798.329 kb on + strand, within AO356_29230 at 6798.430 kb on - strand, within AO356_29230 at 6798.430 kb on - strand, within AO356_29230 at 6798.430 kb on - strand, within AO356_29230 at 6798.457 kb on + strand, within AO356_29230 at 6798.465 kb on + strand, within AO356_29230 at 6798.465 kb on + strand, within AO356_29230 at 6798.466 kb on - strand, within AO356_29230 at 6798.565 kb on + strand, within AO356_29230 at 6798.618 kb on + strand, within AO356_29230 at 6798.621 kb on - strand, within AO356_29230 at 6798.621 kb on - strand, within AO356_29230 at 6798.621 kb on - strand, within AO356_29230 at 6798.636 kb on - strand, within AO356_29230 at 6798.680 kb on - strand, within AO356_29230
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 2 mg/ml remove 6,795,992 - +0.4 6,796,090 + AO356_29220 0.14 -0.9 6,796,419 - AO356_29220 0.55 -1.2 6,796,522 - AO356_29220 0.68 -0.4 6,796,822 + +1.2 6,796,822 + +0.7 6,796,967 + AO356_29225 0.12 -0.8 6,796,968 - AO356_29225 0.12 +0.3 6,796,968 - AO356_29225 0.12 -0.3 6,796,968 - AO356_29225 0.12 +0.6 6,796,968 - AO356_29225 0.12 +0.5 6,797,175 - AO356_29225 0.35 +0.5 6,797,771 + +1.6 6,797,771 + +0.4 6,797,777 + +0.4 6,797,778 - -0.1 6,797,778 - -0.6 6,797,790 + +0.8 6,797,841 - -0.1 6,797,910 - -0.3 6,797,976 - -1.4 6,797,976 - +0.0 6,797,988 + +0.2 6,797,988 + +0.6 6,797,989 - -0.7 6,797,989 - +0.2 6,797,989 - -0.8 6,798,030 - +0.6 6,798,098 + -0.0 6,798,098 + +0.5 6,798,098 + +0.2 6,798,098 + +0.5 6,798,099 - -0.0 6,798,099 - +0.4 6,798,099 - +0.3 6,798,099 - +0.5 6,798,099 - +0.5 6,798,103 - AO356_29230 0.10 -0.2 6,798,103 - AO356_29230 0.10 +0.3 6,798,209 + AO356_29230 0.19 +1.0 6,798,210 - AO356_29230 0.19 +0.3 6,798,210 - AO356_29230 0.19 +0.6 6,798,263 + AO356_29230 0.23 +0.6 6,798,298 - AO356_29230 0.26 +0.3 6,798,329 + AO356_29230 0.28 +0.7 6,798,329 + AO356_29230 0.28 -0.3 6,798,430 - AO356_29230 0.36 +0.8 6,798,430 - AO356_29230 0.36 -0.4 6,798,430 - AO356_29230 0.36 +0.4 6,798,457 + AO356_29230 0.38 -1.3 6,798,465 + AO356_29230 0.39 +0.9 6,798,465 + AO356_29230 0.39 -0.4 6,798,466 - AO356_29230 0.39 +0.4 6,798,565 + AO356_29230 0.47 +1.0 6,798,618 + AO356_29230 0.51 +0.2 6,798,621 - AO356_29230 0.51 +0.7 6,798,621 - AO356_29230 0.51 +0.4 6,798,621 - AO356_29230 0.51 -0.0 6,798,636 - AO356_29230 0.52 -0.3 6,798,680 - AO356_29230 0.56 -0.5
Or see this region's nucleotide sequence