Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28920

Experiment: Bacitracin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28910 and AO356_28915 overlap by 60 nucleotidesAO356_28915 and AO356_28920 are separated by 127 nucleotidesAO356_28920 and AO356_28925 are separated by 84 nucleotidesAO356_28925 and AO356_28930 are separated by 30 nucleotides AO356_28910: AO356_28910 - LysR family transcriptional regulator, at 6,723,909 to 6,724,457 _28910 AO356_28915: AO356_28915 - NmrA family transcriptional regulator, at 6,724,398 to 6,725,102 _28915 AO356_28920: AO356_28920 - creatininase, at 6,725,230 to 6,726,024 _28920 AO356_28925: AO356_28925 - methylmalonyl-CoA epimerase, at 6,726,109 to 6,726,666 _28925 AO356_28930: AO356_28930 - thiamine permease, at 6,726,697 to 6,728,127 _28930 Position (kb) 6725 6726 6727Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6724.329 kb on + strand, within AO356_28910at 6724.463 kb on - strandat 6724.463 kb on - strandat 6724.554 kb on + strand, within AO356_28915at 6724.554 kb on + strand, within AO356_28915at 6724.555 kb on - strand, within AO356_28915at 6724.555 kb on - strand, within AO356_28915at 6724.580 kb on + strand, within AO356_28915at 6724.581 kb on - strand, within AO356_28915at 6724.581 kb on - strand, within AO356_28915at 6724.639 kb on - strand, within AO356_28915at 6724.684 kb on - strand, within AO356_28915at 6724.894 kb on - strand, within AO356_28915at 6725.064 kb on + strandat 6725.065 kb on - strandat 6725.236 kb on + strandat 6725.236 kb on + strandat 6725.236 kb on + strandat 6725.236 kb on + strandat 6725.236 kb on + strandat 6725.236 kb on + strandat 6725.236 kb on + strandat 6725.236 kb on + strandat 6725.237 kb on - strandat 6725.237 kb on - strandat 6725.237 kb on - strandat 6725.240 kb on - strandat 6725.399 kb on + strand, within AO356_28920at 6725.400 kb on - strand, within AO356_28920at 6725.400 kb on - strand, within AO356_28920at 6725.403 kb on + strand, within AO356_28920at 6725.403 kb on + strand, within AO356_28920at 6725.403 kb on + strand, within AO356_28920at 6725.403 kb on + strand, within AO356_28920at 6725.403 kb on + strand, within AO356_28920at 6725.403 kb on + strand, within AO356_28920at 6725.403 kb on + strand, within AO356_28920at 6725.403 kb on + strand, within AO356_28920at 6725.403 kb on + strand, within AO356_28920at 6725.403 kb on + strand, within AO356_28920at 6725.403 kb on + strand, within AO356_28920at 6725.403 kb on + strand, within AO356_28920at 6725.403 kb on + strand, within AO356_28920at 6725.403 kb on + strand, within AO356_28920at 6725.403 kb on + strand, within AO356_28920at 6725.404 kb on - strand, within AO356_28920at 6725.404 kb on - strand, within AO356_28920at 6725.404 kb on - strand, within AO356_28920at 6725.404 kb on - strand, within AO356_28920at 6725.404 kb on - strand, within AO356_28920at 6725.404 kb on - strand, within AO356_28920at 6725.404 kb on - strand, within AO356_28920at 6725.408 kb on + strand, within AO356_28920at 6725.408 kb on + strand, within AO356_28920at 6725.409 kb on - strand, within AO356_28920at 6725.469 kb on - strand, within AO356_28920at 6725.472 kb on - strand, within AO356_28920at 6725.638 kb on + strand, within AO356_28920at 6725.638 kb on + strand, within AO356_28920at 6725.639 kb on - strand, within AO356_28920at 6725.639 kb on - strand, within AO356_28920at 6725.814 kb on + strand, within AO356_28920at 6725.814 kb on + strand, within AO356_28920at 6725.814 kb on + strand, within AO356_28920at 6725.814 kb on + strand, within AO356_28920at 6725.815 kb on - strand, within AO356_28920at 6725.815 kb on - strand, within AO356_28920at 6725.822 kb on + strand, within AO356_28920at 6725.822 kb on + strand, within AO356_28920at 6725.823 kb on - strand, within AO356_28920at 6725.890 kb on + strand, within AO356_28920at 6725.891 kb on - strand, within AO356_28920at 6726.003 kb on + strandat 6726.110 kb on + strandat 6726.110 kb on + strandat 6726.111 kb on - strandat 6726.111 kb on - strandat 6726.181 kb on + strand, within AO356_28925at 6726.181 kb on + strand, within AO356_28925at 6726.182 kb on - strand, within AO356_28925at 6726.182 kb on - strand, within AO356_28925at 6726.182 kb on - strand, within AO356_28925at 6726.317 kb on + strand, within AO356_28925at 6726.464 kb on + strand, within AO356_28925at 6726.464 kb on + strand, within AO356_28925at 6726.464 kb on + strand, within AO356_28925at 6726.465 kb on - strand, within AO356_28925at 6726.500 kb on + strand, within AO356_28925at 6726.501 kb on - strand, within AO356_28925at 6726.684 kb on - strandat 6726.699 kb on - strandat 6726.703 kb on - strandat 6726.759 kb on - strandat 6726.759 kb on - strandat 6726.854 kb on - strand, within AO356_28930at 6726.854 kb on - strand, within AO356_28930at 6726.947 kb on + strand, within AO356_28930

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 2 mg/ml
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6,724,329 + AO356_28910 0.77 -0.1
6,724,463 - -0.1
6,724,463 - -0.6
6,724,554 + AO356_28915 0.22 +0.1
6,724,554 + AO356_28915 0.22 -0.3
6,724,555 - AO356_28915 0.22 -0.2
6,724,555 - AO356_28915 0.22 +0.0
6,724,580 + AO356_28915 0.26 -0.1
6,724,581 - AO356_28915 0.26 -1.0
6,724,581 - AO356_28915 0.26 +0.4
6,724,639 - AO356_28915 0.34 +2.0
6,724,684 - AO356_28915 0.41 -1.1
6,724,894 - AO356_28915 0.70 +0.3
6,725,064 + +0.7
6,725,065 - +0.0
6,725,236 + +0.1
6,725,236 + -0.8
6,725,236 + -0.6
6,725,236 + +0.1
6,725,236 + -0.4
6,725,236 + +0.9
6,725,236 + -0.0
6,725,236 + -0.6
6,725,237 - +0.4
6,725,237 - -0.5
6,725,237 - -0.0
6,725,240 - +0.1
6,725,399 + AO356_28920 0.21 +0.3
6,725,400 - AO356_28920 0.21 +1.1
6,725,400 - AO356_28920 0.21 -0.4
6,725,403 + AO356_28920 0.22 +0.3
6,725,403 + AO356_28920 0.22 -0.1
6,725,403 + AO356_28920 0.22 +1.4
6,725,403 + AO356_28920 0.22 +0.2
6,725,403 + AO356_28920 0.22 +1.6
6,725,403 + AO356_28920 0.22 +0.5
6,725,403 + AO356_28920 0.22 +0.1
6,725,403 + AO356_28920 0.22 +0.6
6,725,403 + AO356_28920 0.22 -0.5
6,725,403 + AO356_28920 0.22 -0.5
6,725,403 + AO356_28920 0.22 -0.1
6,725,403 + AO356_28920 0.22 -0.6
6,725,403 + AO356_28920 0.22 +0.3
6,725,403 + AO356_28920 0.22 -0.8
6,725,403 + AO356_28920 0.22 +0.0
6,725,404 - AO356_28920 0.22 +0.4
6,725,404 - AO356_28920 0.22 +0.8
6,725,404 - AO356_28920 0.22 +0.3
6,725,404 - AO356_28920 0.22 -0.1
6,725,404 - AO356_28920 0.22 +0.1
6,725,404 - AO356_28920 0.22 +0.6
6,725,404 - AO356_28920 0.22 +0.3
6,725,408 + AO356_28920 0.22 -2.8
6,725,408 + AO356_28920 0.22 -0.1
6,725,409 - AO356_28920 0.23 -0.9
6,725,469 - AO356_28920 0.30 -2.1
6,725,472 - AO356_28920 0.30 +0.0
6,725,638 + AO356_28920 0.51 +0.4
6,725,638 + AO356_28920 0.51 -0.6
6,725,639 - AO356_28920 0.51 -0.9
6,725,639 - AO356_28920 0.51 -1.5
6,725,814 + AO356_28920 0.73 +0.4
6,725,814 + AO356_28920 0.73 -0.0
6,725,814 + AO356_28920 0.73 -0.3
6,725,814 + AO356_28920 0.73 -0.4
6,725,815 - AO356_28920 0.74 -0.2
6,725,815 - AO356_28920 0.74 +0.4
6,725,822 + AO356_28920 0.74 +0.2
6,725,822 + AO356_28920 0.74 -0.2
6,725,823 - AO356_28920 0.75 -0.8
6,725,890 + AO356_28920 0.83 -0.9
6,725,891 - AO356_28920 0.83 -0.1
6,726,003 + -0.8
6,726,110 + -0.2
6,726,110 + +0.4
6,726,111 - +0.9
6,726,111 - +1.1
6,726,181 + AO356_28925 0.13 +0.8
6,726,181 + AO356_28925 0.13 +0.1
6,726,182 - AO356_28925 0.13 +0.5
6,726,182 - AO356_28925 0.13 +0.9
6,726,182 - AO356_28925 0.13 -0.1
6,726,317 + AO356_28925 0.37 +0.2
6,726,464 + AO356_28925 0.64 +0.6
6,726,464 + AO356_28925 0.64 -0.4
6,726,464 + AO356_28925 0.64 +0.9
6,726,465 - AO356_28925 0.64 +0.6
6,726,500 + AO356_28925 0.70 +0.8
6,726,501 - AO356_28925 0.70 +0.6
6,726,684 - +0.9
6,726,699 - -0.2
6,726,703 - +0.1
6,726,759 - +1.4
6,726,759 - +1.0
6,726,854 - AO356_28930 0.11 -0.1
6,726,854 - AO356_28930 0.11 -0.2
6,726,947 + AO356_28930 0.17 -0.3

Or see this region's nucleotide sequence