Experiment: Bacitracin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_28910 and AO356_28915 overlap by 60 nucleotides AO356_28915 and AO356_28920 are separated by 127 nucleotides AO356_28920 and AO356_28925 are separated by 84 nucleotides AO356_28925 and AO356_28930 are separated by 30 nucleotides
AO356_28910: AO356_28910 - LysR family transcriptional regulator, at 6,723,909 to 6,724,457
_28910
AO356_28915: AO356_28915 - NmrA family transcriptional regulator, at 6,724,398 to 6,725,102
_28915
AO356_28920: AO356_28920 - creatininase, at 6,725,230 to 6,726,024
_28920
AO356_28925: AO356_28925 - methylmalonyl-CoA epimerase, at 6,726,109 to 6,726,666
_28925
AO356_28930: AO356_28930 - thiamine permease, at 6,726,697 to 6,728,127
_28930
Position (kb)
6725
6726
6727 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6724.329 kb on + strand, within AO356_28910 at 6724.463 kb on - strand at 6724.463 kb on - strand at 6724.554 kb on + strand, within AO356_28915 at 6724.554 kb on + strand, within AO356_28915 at 6724.555 kb on - strand, within AO356_28915 at 6724.555 kb on - strand, within AO356_28915 at 6724.580 kb on + strand, within AO356_28915 at 6724.581 kb on - strand, within AO356_28915 at 6724.581 kb on - strand, within AO356_28915 at 6724.639 kb on - strand, within AO356_28915 at 6724.684 kb on - strand, within AO356_28915 at 6724.894 kb on - strand, within AO356_28915 at 6725.064 kb on + strand at 6725.065 kb on - strand at 6725.236 kb on + strand at 6725.236 kb on + strand at 6725.236 kb on + strand at 6725.236 kb on + strand at 6725.236 kb on + strand at 6725.236 kb on + strand at 6725.236 kb on + strand at 6725.236 kb on + strand at 6725.237 kb on - strand at 6725.237 kb on - strand at 6725.237 kb on - strand at 6725.240 kb on - strand at 6725.399 kb on + strand, within AO356_28920 at 6725.400 kb on - strand, within AO356_28920 at 6725.400 kb on - strand, within AO356_28920 at 6725.403 kb on + strand, within AO356_28920 at 6725.403 kb on + strand, within AO356_28920 at 6725.403 kb on + strand, within AO356_28920 at 6725.403 kb on + strand, within AO356_28920 at 6725.403 kb on + strand, within AO356_28920 at 6725.403 kb on + strand, within AO356_28920 at 6725.403 kb on + strand, within AO356_28920 at 6725.403 kb on + strand, within AO356_28920 at 6725.403 kb on + strand, within AO356_28920 at 6725.403 kb on + strand, within AO356_28920 at 6725.403 kb on + strand, within AO356_28920 at 6725.403 kb on + strand, within AO356_28920 at 6725.403 kb on + strand, within AO356_28920 at 6725.403 kb on + strand, within AO356_28920 at 6725.403 kb on + strand, within AO356_28920 at 6725.404 kb on - strand, within AO356_28920 at 6725.404 kb on - strand, within AO356_28920 at 6725.404 kb on - strand, within AO356_28920 at 6725.404 kb on - strand, within AO356_28920 at 6725.404 kb on - strand, within AO356_28920 at 6725.404 kb on - strand, within AO356_28920 at 6725.404 kb on - strand, within AO356_28920 at 6725.408 kb on + strand, within AO356_28920 at 6725.408 kb on + strand, within AO356_28920 at 6725.409 kb on - strand, within AO356_28920 at 6725.469 kb on - strand, within AO356_28920 at 6725.472 kb on - strand, within AO356_28920 at 6725.638 kb on + strand, within AO356_28920 at 6725.638 kb on + strand, within AO356_28920 at 6725.639 kb on - strand, within AO356_28920 at 6725.639 kb on - strand, within AO356_28920 at 6725.814 kb on + strand, within AO356_28920 at 6725.814 kb on + strand, within AO356_28920 at 6725.814 kb on + strand, within AO356_28920 at 6725.814 kb on + strand, within AO356_28920 at 6725.815 kb on - strand, within AO356_28920 at 6725.815 kb on - strand, within AO356_28920 at 6725.822 kb on + strand, within AO356_28920 at 6725.822 kb on + strand, within AO356_28920 at 6725.823 kb on - strand, within AO356_28920 at 6725.890 kb on + strand, within AO356_28920 at 6725.891 kb on - strand, within AO356_28920 at 6726.003 kb on + strand at 6726.110 kb on + strand at 6726.110 kb on + strand at 6726.111 kb on - strand at 6726.111 kb on - strand at 6726.181 kb on + strand, within AO356_28925 at 6726.181 kb on + strand, within AO356_28925 at 6726.182 kb on - strand, within AO356_28925 at 6726.182 kb on - strand, within AO356_28925 at 6726.182 kb on - strand, within AO356_28925 at 6726.317 kb on + strand, within AO356_28925 at 6726.464 kb on + strand, within AO356_28925 at 6726.464 kb on + strand, within AO356_28925 at 6726.464 kb on + strand, within AO356_28925 at 6726.465 kb on - strand, within AO356_28925 at 6726.500 kb on + strand, within AO356_28925 at 6726.501 kb on - strand, within AO356_28925 at 6726.684 kb on - strand at 6726.699 kb on - strand at 6726.703 kb on - strand at 6726.759 kb on - strand at 6726.759 kb on - strand at 6726.854 kb on - strand, within AO356_28930 at 6726.854 kb on - strand, within AO356_28930 at 6726.947 kb on + strand, within AO356_28930
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 2 mg/ml remove 6,724,329 + AO356_28910 0.77 -0.1 6,724,463 - -0.1 6,724,463 - -0.6 6,724,554 + AO356_28915 0.22 +0.1 6,724,554 + AO356_28915 0.22 -0.3 6,724,555 - AO356_28915 0.22 -0.2 6,724,555 - AO356_28915 0.22 +0.0 6,724,580 + AO356_28915 0.26 -0.1 6,724,581 - AO356_28915 0.26 -1.0 6,724,581 - AO356_28915 0.26 +0.4 6,724,639 - AO356_28915 0.34 +2.0 6,724,684 - AO356_28915 0.41 -1.1 6,724,894 - AO356_28915 0.70 +0.3 6,725,064 + +0.7 6,725,065 - +0.0 6,725,236 + +0.1 6,725,236 + -0.8 6,725,236 + -0.6 6,725,236 + +0.1 6,725,236 + -0.4 6,725,236 + +0.9 6,725,236 + -0.0 6,725,236 + -0.6 6,725,237 - +0.4 6,725,237 - -0.5 6,725,237 - -0.0 6,725,240 - +0.1 6,725,399 + AO356_28920 0.21 +0.3 6,725,400 - AO356_28920 0.21 +1.1 6,725,400 - AO356_28920 0.21 -0.4 6,725,403 + AO356_28920 0.22 +0.3 6,725,403 + AO356_28920 0.22 -0.1 6,725,403 + AO356_28920 0.22 +1.4 6,725,403 + AO356_28920 0.22 +0.2 6,725,403 + AO356_28920 0.22 +1.6 6,725,403 + AO356_28920 0.22 +0.5 6,725,403 + AO356_28920 0.22 +0.1 6,725,403 + AO356_28920 0.22 +0.6 6,725,403 + AO356_28920 0.22 -0.5 6,725,403 + AO356_28920 0.22 -0.5 6,725,403 + AO356_28920 0.22 -0.1 6,725,403 + AO356_28920 0.22 -0.6 6,725,403 + AO356_28920 0.22 +0.3 6,725,403 + AO356_28920 0.22 -0.8 6,725,403 + AO356_28920 0.22 +0.0 6,725,404 - AO356_28920 0.22 +0.4 6,725,404 - AO356_28920 0.22 +0.8 6,725,404 - AO356_28920 0.22 +0.3 6,725,404 - AO356_28920 0.22 -0.1 6,725,404 - AO356_28920 0.22 +0.1 6,725,404 - AO356_28920 0.22 +0.6 6,725,404 - AO356_28920 0.22 +0.3 6,725,408 + AO356_28920 0.22 -2.8 6,725,408 + AO356_28920 0.22 -0.1 6,725,409 - AO356_28920 0.23 -0.9 6,725,469 - AO356_28920 0.30 -2.1 6,725,472 - AO356_28920 0.30 +0.0 6,725,638 + AO356_28920 0.51 +0.4 6,725,638 + AO356_28920 0.51 -0.6 6,725,639 - AO356_28920 0.51 -0.9 6,725,639 - AO356_28920 0.51 -1.5 6,725,814 + AO356_28920 0.73 +0.4 6,725,814 + AO356_28920 0.73 -0.0 6,725,814 + AO356_28920 0.73 -0.3 6,725,814 + AO356_28920 0.73 -0.4 6,725,815 - AO356_28920 0.74 -0.2 6,725,815 - AO356_28920 0.74 +0.4 6,725,822 + AO356_28920 0.74 +0.2 6,725,822 + AO356_28920 0.74 -0.2 6,725,823 - AO356_28920 0.75 -0.8 6,725,890 + AO356_28920 0.83 -0.9 6,725,891 - AO356_28920 0.83 -0.1 6,726,003 + -0.8 6,726,110 + -0.2 6,726,110 + +0.4 6,726,111 - +0.9 6,726,111 - +1.1 6,726,181 + AO356_28925 0.13 +0.8 6,726,181 + AO356_28925 0.13 +0.1 6,726,182 - AO356_28925 0.13 +0.5 6,726,182 - AO356_28925 0.13 +0.9 6,726,182 - AO356_28925 0.13 -0.1 6,726,317 + AO356_28925 0.37 +0.2 6,726,464 + AO356_28925 0.64 +0.6 6,726,464 + AO356_28925 0.64 -0.4 6,726,464 + AO356_28925 0.64 +0.9 6,726,465 - AO356_28925 0.64 +0.6 6,726,500 + AO356_28925 0.70 +0.8 6,726,501 - AO356_28925 0.70 +0.6 6,726,684 - +0.9 6,726,699 - -0.2 6,726,703 - +0.1 6,726,759 - +1.4 6,726,759 - +1.0 6,726,854 - AO356_28930 0.11 -0.1 6,726,854 - AO356_28930 0.11 -0.2 6,726,947 + AO356_28930 0.17 -0.3
Or see this region's nucleotide sequence