Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28400

Experiment: Bacitracin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28395 and AO356_28400 are separated by 14 nucleotidesAO356_28400 and AO356_28405 are separated by 39 nucleotidesAO356_28405 and AO356_28410 are separated by 377 nucleotides AO356_28395: AO356_28395 - long-chain fatty acid--CoA ligase, at 6,603,521 to 6,604,681 _28395 AO356_28400: AO356_28400 - dimethyl sulfone monooxygenase SfnG, at 6,604,696 to 6,605,793 _28400 AO356_28405: AO356_28405 - NADH-dependent FMN reductase, at 6,605,833 to 6,606,396 _28405 AO356_28410: AO356_28410 - monooxygenase, at 6,606,774 to 6,608,018 _28410 Position (kb) 6604 6605 6606Strain fitness (log2 ratio) -1 0 1at 6604.765 kb on - strandat 6604.775 kb on + strandat 6604.775 kb on + strandat 6604.776 kb on - strandat 6604.829 kb on - strand, within AO356_28400at 6604.904 kb on + strand, within AO356_28400at 6604.904 kb on + strand, within AO356_28400at 6604.905 kb on - strand, within AO356_28400at 6605.282 kb on + strand, within AO356_28400at 6605.283 kb on - strand, within AO356_28400at 6605.297 kb on + strand, within AO356_28400at 6605.604 kb on - strand, within AO356_28400at 6605.693 kb on + strandat 6605.693 kb on + strandat 6605.694 kb on - strandat 6605.694 kb on - strandat 6605.800 kb on + strandat 6605.963 kb on + strand, within AO356_28405at 6606.076 kb on + strand, within AO356_28405at 6606.135 kb on - strand, within AO356_28405at 6606.135 kb on - strand, within AO356_28405at 6606.401 kb on + strandat 6606.767 kb on + strandat 6606.768 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 2 mg/ml
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6,604,765 - +0.7
6,604,775 + -0.3
6,604,775 + +1.0
6,604,776 - +0.4
6,604,829 - AO356_28400 0.12 +0.3
6,604,904 + AO356_28400 0.19 +1.0
6,604,904 + AO356_28400 0.19 -0.3
6,604,905 - AO356_28400 0.19 -0.9
6,605,282 + AO356_28400 0.53 -0.3
6,605,283 - AO356_28400 0.53 +0.0
6,605,297 + AO356_28400 0.55 -0.6
6,605,604 - AO356_28400 0.83 -1.4
6,605,693 + +0.3
6,605,693 + -0.4
6,605,694 - -0.2
6,605,694 - +0.3
6,605,800 + +0.6
6,605,963 + AO356_28405 0.23 -0.9
6,606,076 + AO356_28405 0.43 -0.4
6,606,135 - AO356_28405 0.54 -0.9
6,606,135 - AO356_28405 0.54 -0.7
6,606,401 + -0.4
6,606,767 + +0.6
6,606,768 - +0.6

Or see this region's nucleotide sequence