Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26840

Experiment: Bacitracin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26835 and AO356_26840 are separated by 16 nucleotidesAO356_26840 and AO356_26845 are separated by 15 nucleotides AO356_26835: AO356_26835 - type VI secretion protein ImpA, at 6,110,378 to 6,112,603 _26835 AO356_26840: AO356_26840 - hypothetical protein, at 6,112,620 to 6,113,075 _26840 AO356_26845: AO356_26845 - hypothetical protein, at 6,113,091 to 6,114,206 _26845 Position (kb) 6112 6113 6114Strain fitness (log2 ratio) -1 0 1at 6111.734 kb on + strand, within AO356_26835at 6111.758 kb on + strand, within AO356_26835at 6112.601 kb on + strandat 6112.635 kb on + strandat 6112.635 kb on + strandat 6112.635 kb on + strandat 6112.636 kb on - strandat 6113.013 kb on + strand, within AO356_26840at 6113.073 kb on + strandat 6113.081 kb on + strandat 6113.082 kb on - strandat 6113.338 kb on + strand, within AO356_26845at 6113.353 kb on - strand, within AO356_26845at 6113.512 kb on - strand, within AO356_26845at 6113.760 kb on + strand, within AO356_26845at 6113.821 kb on - strand, within AO356_26845

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 2 mg/ml
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6,111,734 + AO356_26835 0.61 -0.0
6,111,758 + AO356_26835 0.62 -0.1
6,112,601 + -0.8
6,112,635 + +0.7
6,112,635 + +0.3
6,112,635 + +0.2
6,112,636 - -0.0
6,113,013 + AO356_26840 0.86 +0.3
6,113,073 + -0.0
6,113,081 + +0.3
6,113,082 - +0.5
6,113,338 + AO356_26845 0.22 +0.6
6,113,353 - AO356_26845 0.23 -0.3
6,113,512 - AO356_26845 0.38 -0.4
6,113,760 + AO356_26845 0.60 -0.2
6,113,821 - AO356_26845 0.65 +0.4

Or see this region's nucleotide sequence