Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_25880

Experiment: Bacitracin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_25875 and AO356_25880 are separated by 178 nucleotidesAO356_25880 and AO356_25885 overlap by 4 nucleotides AO356_25875: AO356_25875 - multidrug transporter, at 5,849,138 to 5,852,233 _25875 AO356_25880: AO356_25880 - acriflavine resistance protein B, at 5,852,412 to 5,855,516 _25880 AO356_25885: AO356_25885 - RND transporter, at 5,855,513 to 5,856,988 _25885 Position (kb) 5852 5853 5854 5855 5856Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5851.709 kb on - strand, within AO356_25875at 5851.745 kb on + strand, within AO356_25875at 5851.745 kb on + strand, within AO356_25875at 5851.745 kb on + strand, within AO356_25875at 5851.745 kb on + strand, within AO356_25875at 5851.745 kb on + strand, within AO356_25875at 5851.746 kb on - strand, within AO356_25875at 5851.746 kb on - strand, within AO356_25875at 5851.746 kb on - strand, within AO356_25875at 5851.775 kb on + strand, within AO356_25875at 5851.775 kb on + strand, within AO356_25875at 5851.986 kb on - strandat 5852.168 kb on + strandat 5852.168 kb on + strandat 5852.168 kb on + strandat 5852.169 kb on - strandat 5852.169 kb on - strandat 5852.175 kb on - strandat 5852.230 kb on - strandat 5852.676 kb on - strandat 5852.676 kb on - strandat 5852.676 kb on - strandat 5852.676 kb on - strandat 5852.796 kb on + strand, within AO356_25880at 5852.874 kb on + strand, within AO356_25880at 5853.050 kb on - strand, within AO356_25880at 5853.219 kb on + strand, within AO356_25880at 5853.446 kb on - strand, within AO356_25880at 5853.543 kb on + strand, within AO356_25880at 5853.543 kb on + strand, within AO356_25880at 5853.543 kb on + strand, within AO356_25880at 5853.543 kb on + strand, within AO356_25880at 5853.543 kb on + strand, within AO356_25880at 5853.544 kb on - strand, within AO356_25880at 5853.544 kb on - strand, within AO356_25880at 5853.544 kb on - strand, within AO356_25880at 5853.684 kb on + strand, within AO356_25880at 5853.740 kb on - strand, within AO356_25880at 5853.746 kb on - strand, within AO356_25880at 5853.746 kb on - strand, within AO356_25880at 5854.044 kb on + strand, within AO356_25880at 5854.044 kb on + strand, within AO356_25880at 5854.045 kb on - strand, within AO356_25880at 5854.404 kb on + strand, within AO356_25880at 5854.404 kb on + strand, within AO356_25880at 5854.410 kb on + strand, within AO356_25880at 5854.411 kb on - strand, within AO356_25880at 5854.411 kb on - strand, within AO356_25880at 5854.411 kb on - strand, within AO356_25880at 5854.615 kb on - strand, within AO356_25880at 5854.641 kb on + strand, within AO356_25880at 5854.641 kb on + strand, within AO356_25880at 5854.641 kb on + strand, within AO356_25880at 5854.641 kb on + strand, within AO356_25880at 5854.642 kb on - strand, within AO356_25880at 5854.642 kb on - strand, within AO356_25880at 5854.659 kb on + strand, within AO356_25880at 5854.660 kb on - strand, within AO356_25880at 5854.660 kb on - strand, within AO356_25880at 5854.689 kb on + strand, within AO356_25880at 5854.689 kb on + strand, within AO356_25880at 5854.690 kb on - strand, within AO356_25880at 5854.690 kb on - strand, within AO356_25880at 5855.013 kb on + strand, within AO356_25880at 5855.014 kb on - strand, within AO356_25880at 5855.035 kb on - strand, within AO356_25880at 5855.035 kb on - strand, within AO356_25880at 5855.043 kb on + strand, within AO356_25880at 5855.043 kb on + strand, within AO356_25880at 5855.044 kb on - strand, within AO356_25880at 5855.044 kb on - strand, within AO356_25880at 5855.044 kb on - strand, within AO356_25880at 5855.044 kb on - strand, within AO356_25880at 5855.109 kb on + strand, within AO356_25880at 5855.109 kb on + strand, within AO356_25880at 5855.109 kb on + strand, within AO356_25880at 5855.109 kb on + strand, within AO356_25880at 5855.109 kb on + strand, within AO356_25880at 5855.109 kb on + strand, within AO356_25880at 5855.110 kb on - strand, within AO356_25880at 5855.110 kb on - strand, within AO356_25880at 5855.110 kb on - strand, within AO356_25880at 5855.110 kb on - strand, within AO356_25880at 5855.415 kb on + strandat 5855.415 kb on + strandat 5855.416 kb on - strandat 5855.418 kb on - strandat 5855.433 kb on + strandat 5855.439 kb on + strandat 5855.440 kb on - strandat 5855.630 kb on + strandat 5855.664 kb on - strand, within AO356_25885at 5855.664 kb on - strand, within AO356_25885at 5855.664 kb on - strand, within AO356_25885at 5855.736 kb on - strand, within AO356_25885at 5855.960 kb on + strand, within AO356_25885at 5855.960 kb on + strand, within AO356_25885at 5855.961 kb on - strand, within AO356_25885at 5856.107 kb on + strand, within AO356_25885at 5856.107 kb on + strand, within AO356_25885at 5856.107 kb on + strand, within AO356_25885at 5856.108 kb on - strand, within AO356_25885at 5856.167 kb on + strand, within AO356_25885at 5856.497 kb on + strand, within AO356_25885at 5856.497 kb on + strand, within AO356_25885at 5856.498 kb on - strand, within AO356_25885at 5856.498 kb on - strand, within AO356_25885

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 2 mg/ml
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5,851,709 - AO356_25875 0.83 -1.3
5,851,745 + AO356_25875 0.84 -1.5
5,851,745 + AO356_25875 0.84 -2.5
5,851,745 + AO356_25875 0.84 -3.7
5,851,745 + AO356_25875 0.84 -2.2
5,851,745 + AO356_25875 0.84 -3.5
5,851,746 - AO356_25875 0.84 -2.3
5,851,746 - AO356_25875 0.84 -2.5
5,851,746 - AO356_25875 0.84 -0.5
5,851,775 + AO356_25875 0.85 -3.7
5,851,775 + AO356_25875 0.85 -2.6
5,851,986 - -2.4
5,852,168 + -1.7
5,852,168 + -3.2
5,852,168 + -2.9
5,852,169 - -3.3
5,852,169 - -3.1
5,852,175 - -3.3
5,852,230 - -2.8
5,852,676 - -3.3
5,852,676 - -2.9
5,852,676 - -2.7
5,852,676 - -2.2
5,852,796 + AO356_25880 0.12 -1.4
5,852,874 + AO356_25880 0.15 -2.0
5,853,050 - AO356_25880 0.21 -3.1
5,853,219 + AO356_25880 0.26 -2.3
5,853,446 - AO356_25880 0.33 -2.7
5,853,543 + AO356_25880 0.36 -1.8
5,853,543 + AO356_25880 0.36 -3.2
5,853,543 + AO356_25880 0.36 -3.8
5,853,543 + AO356_25880 0.36 -2.0
5,853,543 + AO356_25880 0.36 -3.5
5,853,544 - AO356_25880 0.36 -2.9
5,853,544 - AO356_25880 0.36 -1.5
5,853,544 - AO356_25880 0.36 -1.0
5,853,684 + AO356_25880 0.41 -1.9
5,853,740 - AO356_25880 0.43 -3.5
5,853,746 - AO356_25880 0.43 -1.5
5,853,746 - AO356_25880 0.43 -1.7
5,854,044 + AO356_25880 0.53 -0.9
5,854,044 + AO356_25880 0.53 -3.4
5,854,045 - AO356_25880 0.53 -4.1
5,854,404 + AO356_25880 0.64 -2.0
5,854,404 + AO356_25880 0.64 -3.7
5,854,410 + AO356_25880 0.64 -2.2
5,854,411 - AO356_25880 0.64 -2.7
5,854,411 - AO356_25880 0.64 -2.4
5,854,411 - AO356_25880 0.64 -1.5
5,854,615 - AO356_25880 0.71 -1.3
5,854,641 + AO356_25880 0.72 +0.3
5,854,641 + AO356_25880 0.72 -2.1
5,854,641 + AO356_25880 0.72 -2.9
5,854,641 + AO356_25880 0.72 -4.4
5,854,642 - AO356_25880 0.72 -3.6
5,854,642 - AO356_25880 0.72 -1.9
5,854,659 + AO356_25880 0.72 -1.8
5,854,660 - AO356_25880 0.72 -2.2
5,854,660 - AO356_25880 0.72 -1.8
5,854,689 + AO356_25880 0.73 -3.2
5,854,689 + AO356_25880 0.73 -0.5
5,854,690 - AO356_25880 0.73 +0.5
5,854,690 - AO356_25880 0.73 -3.1
5,855,013 + AO356_25880 0.84 -3.4
5,855,014 - AO356_25880 0.84 -3.2
5,855,035 - AO356_25880 0.84 -2.7
5,855,035 - AO356_25880 0.84 -3.3
5,855,043 + AO356_25880 0.85 -3.3
5,855,043 + AO356_25880 0.85 -3.2
5,855,044 - AO356_25880 0.85 -3.8
5,855,044 - AO356_25880 0.85 -2.3
5,855,044 - AO356_25880 0.85 -1.9
5,855,044 - AO356_25880 0.85 -2.2
5,855,109 + AO356_25880 0.87 -2.1
5,855,109 + AO356_25880 0.87 -2.0
5,855,109 + AO356_25880 0.87 -2.5
5,855,109 + AO356_25880 0.87 -3.1
5,855,109 + AO356_25880 0.87 -0.9
5,855,109 + AO356_25880 0.87 -2.9
5,855,110 - AO356_25880 0.87 -3.8
5,855,110 - AO356_25880 0.87 -1.4
5,855,110 - AO356_25880 0.87 -3.1
5,855,110 - AO356_25880 0.87 -3.3
5,855,415 + -2.3
5,855,415 + -2.6
5,855,416 - -3.0
5,855,418 - -4.0
5,855,433 + -2.6
5,855,439 + -1.8
5,855,440 - -3.3
5,855,630 + -2.6
5,855,664 - AO356_25885 0.10 -2.6
5,855,664 - AO356_25885 0.10 -2.7
5,855,664 - AO356_25885 0.10 -1.6
5,855,736 - AO356_25885 0.15 -2.5
5,855,960 + AO356_25885 0.30 -3.1
5,855,960 + AO356_25885 0.30 -2.6
5,855,961 - AO356_25885 0.30 -3.4
5,856,107 + AO356_25885 0.40 -3.5
5,856,107 + AO356_25885 0.40 -1.6
5,856,107 + AO356_25885 0.40 -2.9
5,856,108 - AO356_25885 0.40 -1.6
5,856,167 + AO356_25885 0.44 -4.4
5,856,497 + AO356_25885 0.67 -2.8
5,856,497 + AO356_25885 0.67 -4.6
5,856,498 - AO356_25885 0.67 -2.2
5,856,498 - AO356_25885 0.67 -3.1

Or see this region's nucleotide sequence