Experiment: Bacitracin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25860 and AO356_25865 are separated by 118 nucleotides AO356_25865 and AO356_25870 are separated by 191 nucleotides AO356_25870 and AO356_25875 overlap by 4 nucleotides
AO356_25860: AO356_25860 - hypothetical protein, at 5,846,346 to 5,847,017
_25860
AO356_25865: AO356_25865 - peroxidase, at 5,847,136 to 5,847,636
_25865
AO356_25870: AO356_25870 - secretion protein HlyD, at 5,847,828 to 5,849,141
_25870
AO356_25875: AO356_25875 - multidrug transporter, at 5,849,138 to 5,852,233
_25875
Position (kb) 5847
5848
5849
5850 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5847.015 kb on + strand at 5847.016 kb on - strand at 5847.055 kb on + strand at 5847.067 kb on + strand at 5847.067 kb on + strand at 5847.068 kb on - strand at 5847.485 kb on - strand, within AO356_25865 at 5847.607 kb on + strand at 5847.607 kb on + strand at 5847.607 kb on + strand at 5847.717 kb on + strand at 5847.725 kb on + strand at 5847.773 kb on - strand at 5848.337 kb on + strand, within AO356_25870 at 5848.337 kb on + strand, within AO356_25870 at 5848.338 kb on - strand, within AO356_25870 at 5848.384 kb on - strand, within AO356_25870 at 5848.822 kb on + strand, within AO356_25870 at 5848.875 kb on + strand, within AO356_25870 at 5848.904 kb on + strand, within AO356_25870 at 5848.905 kb on - strand, within AO356_25870 at 5849.054 kb on + strand at 5849.522 kb on + strand, within AO356_25875 at 5849.569 kb on + strand, within AO356_25875 at 5849.569 kb on + strand, within AO356_25875 at 5849.752 kb on + strand, within AO356_25875 at 5849.858 kb on + strand, within AO356_25875 at 5849.880 kb on - strand, within AO356_25875
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 2 mg/ml remove 5,847,015 + +1.7 5,847,016 - +0.1 5,847,055 + +0.9 5,847,067 + +1.3 5,847,067 + +0.3 5,847,068 - -0.3 5,847,485 - AO356_25865 0.70 -3.6 5,847,607 + +0.2 5,847,607 + +0.4 5,847,607 + +0.4 5,847,717 + +1.5 5,847,725 + +1.2 5,847,773 - -3.8 5,848,337 + AO356_25870 0.39 -1.5 5,848,337 + AO356_25870 0.39 -3.7 5,848,338 - AO356_25870 0.39 -2.7 5,848,384 - AO356_25870 0.42 -3.0 5,848,822 + AO356_25870 0.76 -3.9 5,848,875 + AO356_25870 0.80 -4.0 5,848,904 + AO356_25870 0.82 -2.5 5,848,905 - AO356_25870 0.82 -3.3 5,849,054 + -1.9 5,849,522 + AO356_25875 0.12 -1.9 5,849,569 + AO356_25875 0.14 -2.0 5,849,569 + AO356_25875 0.14 -3.1 5,849,752 + AO356_25875 0.20 -3.5 5,849,858 + AO356_25875 0.23 -3.3 5,849,880 - AO356_25875 0.24 -1.9
Or see this region's nucleotide sequence