Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24460

Experiment: Bacitracin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24455 and AO356_24460 are separated by 1 nucleotidesAO356_24460 and AO356_24465 are separated by 4 nucleotides AO356_24455: AO356_24455 - ABC transporter permease, at 5,521,358 to 5,522,377 _24455 AO356_24460: AO356_24460 - microcin ABC transporter permease, at 5,522,379 to 5,523,452 _24460 AO356_24465: AO356_24465 - hypothetical protein, at 5,523,457 to 5,525,310 _24465 Position (kb) 5522 5523 5524Strain fitness (log2 ratio) -2 -1 0 1at 5521.677 kb on + strand, within AO356_24455at 5521.678 kb on - strand, within AO356_24455at 5521.809 kb on + strand, within AO356_24455at 5521.946 kb on + strand, within AO356_24455at 5521.954 kb on + strand, within AO356_24455at 5522.058 kb on + strand, within AO356_24455at 5522.073 kb on + strand, within AO356_24455at 5522.136 kb on + strand, within AO356_24455at 5522.137 kb on - strand, within AO356_24455at 5522.137 kb on - strand, within AO356_24455at 5522.148 kb on + strand, within AO356_24455at 5522.148 kb on + strand, within AO356_24455at 5522.148 kb on + strand, within AO356_24455at 5522.148 kb on + strand, within AO356_24455at 5522.148 kb on + strand, within AO356_24455at 5522.149 kb on - strand, within AO356_24455at 5522.214 kb on + strand, within AO356_24455at 5522.214 kb on + strand, within AO356_24455at 5522.230 kb on - strand, within AO356_24455at 5522.230 kb on - strand, within AO356_24455at 5522.279 kb on - strandat 5522.425 kb on + strandat 5522.425 kb on + strandat 5522.425 kb on + strandat 5522.425 kb on + strandat 5522.426 kb on - strandat 5522.426 kb on - strandat 5522.500 kb on + strand, within AO356_24460at 5522.704 kb on + strand, within AO356_24460at 5522.704 kb on + strand, within AO356_24460at 5522.705 kb on - strand, within AO356_24460at 5522.705 kb on - strand, within AO356_24460at 5522.705 kb on - strand, within AO356_24460at 5522.705 kb on - strand, within AO356_24460at 5522.809 kb on + strand, within AO356_24460at 5522.810 kb on - strand, within AO356_24460at 5522.810 kb on - strand, within AO356_24460at 5522.810 kb on - strand, within AO356_24460at 5522.887 kb on + strand, within AO356_24460at 5522.887 kb on + strand, within AO356_24460at 5522.888 kb on - strand, within AO356_24460at 5523.038 kb on - strand, within AO356_24460at 5523.038 kb on - strand, within AO356_24460at 5523.038 kb on - strand, within AO356_24460at 5523.151 kb on + strand, within AO356_24460at 5523.151 kb on + strand, within AO356_24460at 5523.203 kb on - strand, within AO356_24460at 5523.203 kb on - strand, within AO356_24460at 5523.458 kb on + strandat 5523.459 kb on - strandat 5523.459 kb on - strandat 5523.459 kb on - strandat 5523.509 kb on - strandat 5523.566 kb on + strandat 5523.606 kb on - strandat 5523.647 kb on + strand, within AO356_24465at 5523.647 kb on + strand, within AO356_24465at 5523.647 kb on + strand, within AO356_24465at 5523.647 kb on + strand, within AO356_24465at 5523.648 kb on - strand, within AO356_24465at 5523.648 kb on - strand, within AO356_24465at 5523.648 kb on - strand, within AO356_24465at 5523.648 kb on - strand, within AO356_24465at 5523.648 kb on - strand, within AO356_24465at 5523.650 kb on + strand, within AO356_24465at 5523.650 kb on + strand, within AO356_24465at 5523.896 kb on + strand, within AO356_24465at 5523.897 kb on - strand, within AO356_24465at 5523.970 kb on + strand, within AO356_24465at 5523.970 kb on + strand, within AO356_24465at 5523.971 kb on - strand, within AO356_24465at 5523.972 kb on + strand, within AO356_24465at 5523.972 kb on + strand, within AO356_24465at 5523.972 kb on + strand, within AO356_24465at 5523.972 kb on + strand, within AO356_24465at 5523.973 kb on - strand, within AO356_24465at 5523.973 kb on - strand, within AO356_24465at 5523.973 kb on - strand, within AO356_24465at 5523.973 kb on - strand, within AO356_24465at 5523.973 kb on - strand, within AO356_24465at 5524.247 kb on + strand, within AO356_24465at 5524.247 kb on + strand, within AO356_24465at 5524.247 kb on + strand, within AO356_24465at 5524.265 kb on + strand, within AO356_24465at 5524.367 kb on + strand, within AO356_24465at 5524.368 kb on - strand, within AO356_24465

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 2 mg/ml
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5,521,677 + AO356_24455 0.31 -1.0
5,521,678 - AO356_24455 0.31 +0.0
5,521,809 + AO356_24455 0.44 +0.1
5,521,946 + AO356_24455 0.58 +0.1
5,521,954 + AO356_24455 0.58 -0.2
5,522,058 + AO356_24455 0.69 -0.1
5,522,073 + AO356_24455 0.70 -0.3
5,522,136 + AO356_24455 0.76 +0.3
5,522,137 - AO356_24455 0.76 +0.6
5,522,137 - AO356_24455 0.76 -0.7
5,522,148 + AO356_24455 0.77 -0.2
5,522,148 + AO356_24455 0.77 -0.9
5,522,148 + AO356_24455 0.77 +0.0
5,522,148 + AO356_24455 0.77 -0.1
5,522,148 + AO356_24455 0.77 +0.0
5,522,149 - AO356_24455 0.78 -0.4
5,522,214 + AO356_24455 0.84 +1.2
5,522,214 + AO356_24455 0.84 +0.2
5,522,230 - AO356_24455 0.85 -0.3
5,522,230 - AO356_24455 0.85 -0.1
5,522,279 - -0.4
5,522,425 + +0.4
5,522,425 + +0.2
5,522,425 + -0.6
5,522,425 + -0.5
5,522,426 - -0.8
5,522,426 - -0.7
5,522,500 + AO356_24460 0.11 -0.2
5,522,704 + AO356_24460 0.30 -0.5
5,522,704 + AO356_24460 0.30 -0.6
5,522,705 - AO356_24460 0.30 +0.0
5,522,705 - AO356_24460 0.30 -0.3
5,522,705 - AO356_24460 0.30 +0.0
5,522,705 - AO356_24460 0.30 -2.1
5,522,809 + AO356_24460 0.40 +1.0
5,522,810 - AO356_24460 0.40 -1.4
5,522,810 - AO356_24460 0.40 -1.3
5,522,810 - AO356_24460 0.40 -0.2
5,522,887 + AO356_24460 0.47 +0.4
5,522,887 + AO356_24460 0.47 -0.3
5,522,888 - AO356_24460 0.47 -1.0
5,523,038 - AO356_24460 0.61 -0.4
5,523,038 - AO356_24460 0.61 -0.7
5,523,038 - AO356_24460 0.61 -0.5
5,523,151 + AO356_24460 0.72 +0.1
5,523,151 + AO356_24460 0.72 -0.3
5,523,203 - AO356_24460 0.77 -0.7
5,523,203 - AO356_24460 0.77 +0.6
5,523,458 + -0.4
5,523,459 - +0.5
5,523,459 - +0.2
5,523,459 - +0.8
5,523,509 - +0.2
5,523,566 + +0.5
5,523,606 - -0.5
5,523,647 + AO356_24465 0.10 -0.1
5,523,647 + AO356_24465 0.10 +0.3
5,523,647 + AO356_24465 0.10 +0.2
5,523,647 + AO356_24465 0.10 +0.3
5,523,648 - AO356_24465 0.10 -1.7
5,523,648 - AO356_24465 0.10 -0.9
5,523,648 - AO356_24465 0.10 -1.1
5,523,648 - AO356_24465 0.10 -0.6
5,523,648 - AO356_24465 0.10 +0.1
5,523,650 + AO356_24465 0.10 +0.5
5,523,650 + AO356_24465 0.10 +0.2
5,523,896 + AO356_24465 0.24 -0.3
5,523,897 - AO356_24465 0.24 -1.2
5,523,970 + AO356_24465 0.28 -0.2
5,523,970 + AO356_24465 0.28 +0.4
5,523,971 - AO356_24465 0.28 -0.8
5,523,972 + AO356_24465 0.28 -0.4
5,523,972 + AO356_24465 0.28 -0.4
5,523,972 + AO356_24465 0.28 +0.7
5,523,972 + AO356_24465 0.28 -1.4
5,523,973 - AO356_24465 0.28 -0.9
5,523,973 - AO356_24465 0.28 -0.5
5,523,973 - AO356_24465 0.28 -0.4
5,523,973 - AO356_24465 0.28 -0.2
5,523,973 - AO356_24465 0.28 -0.6
5,524,247 + AO356_24465 0.43 -1.6
5,524,247 + AO356_24465 0.43 -0.2
5,524,247 + AO356_24465 0.43 -0.7
5,524,265 + AO356_24465 0.44 -0.2
5,524,367 + AO356_24465 0.49 -0.8
5,524,368 - AO356_24465 0.49 -0.6

Or see this region's nucleotide sequence