Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23235

Experiment: Bacitracin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23220 and AO356_23225 are separated by 287 nucleotidesAO356_23225 and AO356_23230 are separated by 88 nucleotidesAO356_23230 and AO356_23235 are separated by 131 nucleotidesAO356_23235 and AO356_23240 are separated by 458 nucleotides AO356_23220: AO356_23220 - chemotaxis protein, at 5,198,428 to 5,200,032 _23220 AO356_23225: AO356_23225 - hypothetical protein, at 5,200,320 to 5,200,556 _23225 AO356_23230: AO356_23230 - hypothetical protein, at 5,200,645 to 5,200,875 _23230 AO356_23235: AO356_23235 - hypothetical protein, at 5,201,007 to 5,201,201 _23235 AO356_23240: AO356_23240 - hypothetical protein, at 5,201,660 to 5,202,109 _23240 Position (kb) 5201 5202Strain fitness (log2 ratio) -2 -1 0 1at 5200.030 kb on + strandat 5200.106 kb on + strandat 5200.106 kb on + strandat 5200.107 kb on - strandat 5200.198 kb on + strandat 5200.198 kb on + strandat 5200.198 kb on + strandat 5200.286 kb on - strandat 5200.286 kb on - strandat 5200.286 kb on - strandat 5200.287 kb on + strandat 5200.287 kb on + strandat 5200.287 kb on + strandat 5200.287 kb on + strandat 5200.287 kb on + strandat 5200.287 kb on + strandat 5200.287 kb on + strandat 5200.287 kb on + strandat 5200.287 kb on + strandat 5200.287 kb on + strandat 5200.287 kb on + strandat 5200.287 kb on + strandat 5200.288 kb on - strandat 5200.288 kb on - strandat 5200.288 kb on - strandat 5200.288 kb on - strandat 5200.288 kb on - strandat 5200.288 kb on - strandat 5200.288 kb on - strandat 5200.322 kb on - strandat 5200.325 kb on + strandat 5200.326 kb on - strandat 5200.326 kb on - strandat 5200.602 kb on + strandat 5200.602 kb on + strandat 5200.608 kb on + strandat 5200.608 kb on + strandat 5200.609 kb on - strandat 5200.609 kb on - strandat 5200.901 kb on - strandat 5200.980 kb on + strandat 5200.981 kb on - strandat 5200.981 kb on - strandat 5200.999 kb on + strandat 5200.999 kb on + strandat 5200.999 kb on + strandat 5200.999 kb on + strandat 5200.999 kb on + strandat 5200.999 kb on + strandat 5200.999 kb on + strandat 5200.999 kb on + strandat 5201.000 kb on - strandat 5201.000 kb on - strandat 5201.000 kb on - strandat 5201.038 kb on + strand, within AO356_23235at 5201.038 kb on + strand, within AO356_23235at 5201.039 kb on - strand, within AO356_23235at 5201.039 kb on - strand, within AO356_23235at 5201.039 kb on - strand, within AO356_23235at 5201.051 kb on + strand, within AO356_23235at 5201.073 kb on + strand, within AO356_23235at 5201.073 kb on + strand, within AO356_23235at 5201.271 kb on + strandat 5201.280 kb on + strandat 5201.305 kb on - strandat 5201.338 kb on - strandat 5201.341 kb on + strandat 5201.342 kb on - strandat 5201.342 kb on - strandat 5201.384 kb on + strandat 5201.407 kb on + strandat 5201.407 kb on + strandat 5201.407 kb on + strandat 5201.407 kb on + strandat 5201.408 kb on - strandat 5201.408 kb on - strandat 5201.411 kb on - strandat 5201.411 kb on - strandat 5201.496 kb on + strandat 5201.496 kb on + strandat 5201.497 kb on - strandat 5201.497 kb on - strandat 5201.568 kb on - strandat 5201.646 kb on + strandat 5201.646 kb on + strandat 5201.646 kb on + strandat 5201.646 kb on + strandat 5201.647 kb on - strandat 5201.647 kb on - strandat 5201.647 kb on - strandat 5201.647 kb on - strandat 5201.650 kb on + strandat 5201.650 kb on + strandat 5201.650 kb on + strandat 5201.651 kb on - strandat 5201.651 kb on - strandat 5201.651 kb on - strandat 5201.670 kb on + strandat 5201.670 kb on + strandat 5201.670 kb on + strandat 5201.670 kb on + strandat 5201.677 kb on - strandat 5201.729 kb on + strand, within AO356_23240at 5201.755 kb on + strand, within AO356_23240at 5201.756 kb on - strand, within AO356_23240at 5201.759 kb on + strand, within AO356_23240at 5201.759 kb on + strand, within AO356_23240at 5201.759 kb on + strand, within AO356_23240at 5201.759 kb on + strand, within AO356_23240at 5201.759 kb on + strand, within AO356_23240at 5201.759 kb on + strand, within AO356_23240at 5201.759 kb on + strand, within AO356_23240at 5201.759 kb on + strand, within AO356_23240at 5201.759 kb on + strand, within AO356_23240at 5201.759 kb on + strand, within AO356_23240at 5201.760 kb on - strand, within AO356_23240at 5201.760 kb on - strand, within AO356_23240at 5201.760 kb on - strand, within AO356_23240at 5201.912 kb on + strand, within AO356_23240at 5201.913 kb on - strand, within AO356_23240at 5202.193 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 2 mg/ml
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5,200,030 + -0.4
5,200,106 + +0.6
5,200,106 + -0.7
5,200,107 - +0.1
5,200,198 + -0.9
5,200,198 + -0.1
5,200,198 + +0.0
5,200,286 - -0.2
5,200,286 - +0.5
5,200,286 - -0.4
5,200,287 + -0.2
5,200,287 + +0.6
5,200,287 + -1.6
5,200,287 + +0.1
5,200,287 + +0.4
5,200,287 + +0.7
5,200,287 + +0.1
5,200,287 + -0.2
5,200,287 + -2.0
5,200,287 + -0.4
5,200,287 + -1.3
5,200,287 + -0.7
5,200,288 - +0.9
5,200,288 - -0.2
5,200,288 - -1.1
5,200,288 - -0.1
5,200,288 - -0.0
5,200,288 - -0.2
5,200,288 - -0.8
5,200,322 - +0.8
5,200,325 + -0.1
5,200,326 - +0.4
5,200,326 - -1.5
5,200,602 + +0.4
5,200,602 + +0.1
5,200,608 + +1.2
5,200,608 + +0.4
5,200,609 - -0.0
5,200,609 - -0.0
5,200,901 - +0.4
5,200,980 + +1.6
5,200,981 - -1.6
5,200,981 - +0.3
5,200,999 + +0.3
5,200,999 + +0.4
5,200,999 + +0.5
5,200,999 + +1.1
5,200,999 + +0.1
5,200,999 + +0.9
5,200,999 + +0.6
5,200,999 + +1.2
5,201,000 - -0.0
5,201,000 - -1.1
5,201,000 - +0.0
5,201,038 + AO356_23235 0.16 -0.8
5,201,038 + AO356_23235 0.16 -1.2
5,201,039 - AO356_23235 0.16 -2.2
5,201,039 - AO356_23235 0.16 -0.1
5,201,039 - AO356_23235 0.16 -0.1
5,201,051 + AO356_23235 0.23 -0.2
5,201,073 + AO356_23235 0.34 +0.5
5,201,073 + AO356_23235 0.34 -1.3
5,201,271 + +0.4
5,201,280 + -0.1
5,201,305 - -1.0
5,201,338 - +0.3
5,201,341 + +0.2
5,201,342 - -0.4
5,201,342 - +0.9
5,201,384 + -0.4
5,201,407 + -1.1
5,201,407 + +0.2
5,201,407 + +0.3
5,201,407 + +0.0
5,201,408 - -0.8
5,201,408 - +0.1
5,201,411 - -0.5
5,201,411 - -0.1
5,201,496 + -0.2
5,201,496 + +0.2
5,201,497 - +0.3
5,201,497 - -0.8
5,201,568 - -1.0
5,201,646 + -0.5
5,201,646 + +0.7
5,201,646 + +0.0
5,201,646 + -0.8
5,201,647 - -0.5
5,201,647 - -1.7
5,201,647 - -0.7
5,201,647 - +0.4
5,201,650 + -0.4
5,201,650 + -0.6
5,201,650 + -0.5
5,201,651 - +0.2
5,201,651 - -0.6
5,201,651 - -0.1
5,201,670 + -0.6
5,201,670 + +0.0
5,201,670 + -1.4
5,201,670 + -0.1
5,201,677 - -2.0
5,201,729 + AO356_23240 0.15 +0.2
5,201,755 + AO356_23240 0.21 -0.3
5,201,756 - AO356_23240 0.21 -1.4
5,201,759 + AO356_23240 0.22 -0.5
5,201,759 + AO356_23240 0.22 -1.1
5,201,759 + AO356_23240 0.22 +0.3
5,201,759 + AO356_23240 0.22 -0.8
5,201,759 + AO356_23240 0.22 -0.5
5,201,759 + AO356_23240 0.22 -1.1
5,201,759 + AO356_23240 0.22 -0.4
5,201,759 + AO356_23240 0.22 -0.4
5,201,759 + AO356_23240 0.22 +0.2
5,201,759 + AO356_23240 0.22 +0.1
5,201,760 - AO356_23240 0.22 -1.1
5,201,760 - AO356_23240 0.22 -0.7
5,201,760 - AO356_23240 0.22 -0.1
5,201,912 + AO356_23240 0.56 -0.8
5,201,913 - AO356_23240 0.56 -1.6
5,202,193 - +0.3

Or see this region's nucleotide sequence