Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_15105

Experiment: Bacitracin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_15100 and AO356_15105 are separated by 11 nucleotidesAO356_15105 and AO356_15110 are separated by 382 nucleotides AO356_15100: AO356_15100 - hypothetical protein, at 3,414,103 to 3,415,860 _15100 AO356_15105: AO356_15105 - CDP-alcohol phosphatidyltransferase, at 3,415,872 to 3,416,495 _15105 AO356_15110: AO356_15110 - type IV secretion protein Rhs, at 3,416,878 to 3,421,716 _15110 Position (kb) 3415 3416 3417Strain fitness (log2 ratio) -2 -1 0 1at 3414.900 kb on - strand, within AO356_15100at 3415.162 kb on + strand, within AO356_15100at 3415.163 kb on - strand, within AO356_15100at 3415.247 kb on + strand, within AO356_15100at 3415.247 kb on + strand, within AO356_15100at 3415.304 kb on + strand, within AO356_15100at 3415.352 kb on + strand, within AO356_15100at 3415.353 kb on - strand, within AO356_15100at 3415.353 kb on - strand, within AO356_15100at 3415.421 kb on + strand, within AO356_15100at 3415.421 kb on + strand, within AO356_15100at 3415.421 kb on + strand, within AO356_15100at 3415.421 kb on + strand, within AO356_15100at 3415.421 kb on + strand, within AO356_15100at 3415.422 kb on - strand, within AO356_15100at 3415.422 kb on - strand, within AO356_15100at 3415.805 kb on + strandat 3415.805 kb on + strandat 3415.805 kb on + strandat 3415.806 kb on - strandat 3415.806 kb on - strandat 3415.873 kb on + strandat 3415.934 kb on + strandat 3415.934 kb on + strandat 3415.935 kb on - strand, within AO356_15105at 3415.935 kb on - strand, within AO356_15105at 3415.935 kb on - strand, within AO356_15105at 3415.937 kb on - strand, within AO356_15105at 3415.937 kb on - strand, within AO356_15105at 3415.974 kb on + strand, within AO356_15105at 3415.974 kb on + strand, within AO356_15105at 3415.974 kb on + strand, within AO356_15105at 3415.975 kb on - strand, within AO356_15105at 3415.975 kb on - strand, within AO356_15105at 3415.975 kb on - strand, within AO356_15105at 3415.982 kb on - strand, within AO356_15105at 3415.982 kb on - strand, within AO356_15105at 3416.214 kb on + strand, within AO356_15105at 3416.214 kb on + strand, within AO356_15105at 3416.214 kb on + strand, within AO356_15105at 3416.215 kb on - strand, within AO356_15105at 3416.428 kb on + strand, within AO356_15105at 3416.428 kb on + strand, within AO356_15105at 3416.482 kb on + strandat 3416.482 kb on + strandat 3416.482 kb on + strandat 3416.482 kb on + strandat 3416.483 kb on - strandat 3416.483 kb on - strandat 3416.483 kb on - strandat 3416.532 kb on - strandat 3416.532 kb on - strandat 3416.532 kb on - strandat 3416.533 kb on + strandat 3416.533 kb on + strandat 3416.533 kb on + strandat 3416.533 kb on + strandat 3416.533 kb on + strandat 3416.533 kb on + strandat 3416.533 kb on + strandat 3416.534 kb on - strandat 3416.534 kb on - strandat 3416.534 kb on - strandat 3416.534 kb on - strandat 3416.547 kb on + strandat 3416.548 kb on - strandat 3416.553 kb on - strandat 3416.576 kb on - strandat 3416.606 kb on + strandat 3416.606 kb on + strandat 3416.606 kb on + strandat 3416.606 kb on + strandat 3416.607 kb on - strandat 3416.607 kb on - strandat 3416.607 kb on - strandat 3416.607 kb on - strandat 3416.607 kb on - strandat 3416.618 kb on + strandat 3416.618 kb on + strandat 3416.618 kb on + strandat 3416.618 kb on + strandat 3416.682 kb on + strandat 3416.682 kb on + strandat 3416.683 kb on - strandat 3416.683 kb on - strandat 3416.739 kb on + strandat 3416.739 kb on + strandat 3416.739 kb on + strandat 3416.739 kb on + strandat 3416.740 kb on - strandat 3416.740 kb on - strandat 3416.740 kb on - strandat 3416.740 kb on - strandat 3416.740 kb on - strandat 3416.740 kb on - strandat 3416.740 kb on - strandat 3416.740 kb on - strandat 3416.740 kb on - strandat 3416.740 kb on - strandat 3416.740 kb on - strandat 3416.740 kb on - strandat 3416.740 kb on - strandat 3416.740 kb on - strandat 3416.740 kb on - strandat 3416.740 kb on - strandat 3416.742 kb on - strandat 3416.742 kb on - strandat 3416.792 kb on + strandat 3416.792 kb on + strandat 3416.793 kb on - strandat 3416.818 kb on + strandat 3416.818 kb on + strandat 3416.819 kb on - strandat 3416.859 kb on + strandat 3416.888 kb on - strandat 3417.382 kb on + strand, within AO356_15110at 3417.382 kb on + strand, within AO356_15110at 3417.382 kb on + strand, within AO356_15110at 3417.382 kb on + strand, within AO356_15110at 3417.383 kb on - strand, within AO356_15110at 3417.383 kb on - strand, within AO356_15110at 3417.383 kb on - strand, within AO356_15110at 3417.383 kb on - strand, within AO356_15110at 3417.493 kb on + strand, within AO356_15110at 3417.494 kb on - strand, within AO356_15110

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 2 mg/ml
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3,414,900 - AO356_15100 0.45 -0.5
3,415,162 + AO356_15100 0.60 +0.1
3,415,163 - AO356_15100 0.60 -2.1
3,415,247 + AO356_15100 0.65 -0.5
3,415,247 + AO356_15100 0.65 +0.3
3,415,304 + AO356_15100 0.68 -1.0
3,415,352 + AO356_15100 0.71 -0.9
3,415,353 - AO356_15100 0.71 +0.0
3,415,353 - AO356_15100 0.71 -0.1
3,415,421 + AO356_15100 0.75 -0.1
3,415,421 + AO356_15100 0.75 +0.2
3,415,421 + AO356_15100 0.75 +1.1
3,415,421 + AO356_15100 0.75 +0.4
3,415,421 + AO356_15100 0.75 -0.6
3,415,422 - AO356_15100 0.75 +0.2
3,415,422 - AO356_15100 0.75 +0.4
3,415,805 + -0.1
3,415,805 + -0.6
3,415,805 + -2.0
3,415,806 - -0.5
3,415,806 - +0.9
3,415,873 + +0.7
3,415,934 + -1.4
3,415,934 + -0.1
3,415,935 - AO356_15105 0.10 +0.8
3,415,935 - AO356_15105 0.10 -0.6
3,415,935 - AO356_15105 0.10 -0.2
3,415,937 - AO356_15105 0.10 -0.8
3,415,937 - AO356_15105 0.10 -0.9
3,415,974 + AO356_15105 0.16 -0.1
3,415,974 + AO356_15105 0.16 +1.2
3,415,974 + AO356_15105 0.16 +0.4
3,415,975 - AO356_15105 0.17 +1.6
3,415,975 - AO356_15105 0.17 -0.3
3,415,975 - AO356_15105 0.17 +0.4
3,415,982 - AO356_15105 0.18 -0.8
3,415,982 - AO356_15105 0.18 -0.6
3,416,214 + AO356_15105 0.55 -0.8
3,416,214 + AO356_15105 0.55 -0.3
3,416,214 + AO356_15105 0.55 +0.5
3,416,215 - AO356_15105 0.55 -0.4
3,416,428 + AO356_15105 0.89 +0.1
3,416,428 + AO356_15105 0.89 -0.8
3,416,482 + -0.2
3,416,482 + -0.3
3,416,482 + -0.2
3,416,482 + +0.5
3,416,483 - +0.1
3,416,483 - +0.3
3,416,483 - +0.4
3,416,532 - +0.1
3,416,532 - -1.0
3,416,532 - -0.3
3,416,533 + +1.0
3,416,533 + -1.3
3,416,533 + -0.7
3,416,533 + +0.6
3,416,533 + -1.1
3,416,533 + +0.0
3,416,533 + -0.3
3,416,534 - -0.2
3,416,534 - -0.5
3,416,534 - -1.0
3,416,534 - -0.1
3,416,547 + -0.5
3,416,548 - -0.1
3,416,553 - -0.9
3,416,576 - +0.0
3,416,606 + -1.4
3,416,606 + -1.0
3,416,606 + -0.0
3,416,606 + +0.2
3,416,607 - +0.5
3,416,607 - +0.6
3,416,607 - +0.6
3,416,607 - +0.1
3,416,607 - +0.3
3,416,618 + -0.1
3,416,618 + +0.9
3,416,618 + -0.5
3,416,618 + -0.6
3,416,682 + -0.4
3,416,682 + +0.2
3,416,683 - +0.3
3,416,683 - -1.2
3,416,739 + -0.3
3,416,739 + +0.7
3,416,739 + +1.2
3,416,739 + -0.7
3,416,740 - +0.4
3,416,740 - -0.4
3,416,740 - -0.6
3,416,740 - +0.6
3,416,740 - +0.6
3,416,740 - +0.9
3,416,740 - +1.4
3,416,740 - -0.8
3,416,740 - +0.6
3,416,740 - -1.1
3,416,740 - +1.1
3,416,740 - -0.3
3,416,740 - +0.2
3,416,740 - -1.0
3,416,740 - +0.1
3,416,740 - +0.4
3,416,742 - +0.5
3,416,742 - -0.2
3,416,792 + +0.6
3,416,792 + -0.2
3,416,793 - -0.6
3,416,818 + +0.8
3,416,818 + -0.3
3,416,819 - -0.0
3,416,859 + +0.0
3,416,888 - +0.1
3,417,382 + AO356_15110 0.10 -0.2
3,417,382 + AO356_15110 0.10 +0.4
3,417,382 + AO356_15110 0.10 -0.6
3,417,382 + AO356_15110 0.10 -1.0
3,417,383 - AO356_15110 0.10 +0.2
3,417,383 - AO356_15110 0.10 -0.2
3,417,383 - AO356_15110 0.10 +0.9
3,417,383 - AO356_15110 0.10 +0.2
3,417,493 + AO356_15110 0.13 -0.7
3,417,494 - AO356_15110 0.13 +1.2

Or see this region's nucleotide sequence