Experiment: Bacitracin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_15100 and AO356_15105 are separated by 11 nucleotides AO356_15105 and AO356_15110 are separated by 382 nucleotides
AO356_15100: AO356_15100 - hypothetical protein, at 3,414,103 to 3,415,860
_15100
AO356_15105: AO356_15105 - CDP-alcohol phosphatidyltransferase, at 3,415,872 to 3,416,495
_15105
AO356_15110: AO356_15110 - type IV secretion protein Rhs, at 3,416,878 to 3,421,716
_15110
Position (kb)
3415
3416
3417 Strain fitness (log2 ratio)
-2
-1
0
1 at 3414.900 kb on - strand, within AO356_15100 at 3415.162 kb on + strand, within AO356_15100 at 3415.163 kb on - strand, within AO356_15100 at 3415.247 kb on + strand, within AO356_15100 at 3415.247 kb on + strand, within AO356_15100 at 3415.304 kb on + strand, within AO356_15100 at 3415.352 kb on + strand, within AO356_15100 at 3415.353 kb on - strand, within AO356_15100 at 3415.353 kb on - strand, within AO356_15100 at 3415.421 kb on + strand, within AO356_15100 at 3415.421 kb on + strand, within AO356_15100 at 3415.421 kb on + strand, within AO356_15100 at 3415.421 kb on + strand, within AO356_15100 at 3415.421 kb on + strand, within AO356_15100 at 3415.422 kb on - strand, within AO356_15100 at 3415.422 kb on - strand, within AO356_15100 at 3415.805 kb on + strand at 3415.805 kb on + strand at 3415.805 kb on + strand at 3415.806 kb on - strand at 3415.806 kb on - strand at 3415.873 kb on + strand at 3415.934 kb on + strand at 3415.934 kb on + strand at 3415.935 kb on - strand, within AO356_15105 at 3415.935 kb on - strand, within AO356_15105 at 3415.935 kb on - strand, within AO356_15105 at 3415.937 kb on - strand, within AO356_15105 at 3415.937 kb on - strand, within AO356_15105 at 3415.974 kb on + strand, within AO356_15105 at 3415.974 kb on + strand, within AO356_15105 at 3415.974 kb on + strand, within AO356_15105 at 3415.975 kb on - strand, within AO356_15105 at 3415.975 kb on - strand, within AO356_15105 at 3415.975 kb on - strand, within AO356_15105 at 3415.982 kb on - strand, within AO356_15105 at 3415.982 kb on - strand, within AO356_15105 at 3416.214 kb on + strand, within AO356_15105 at 3416.214 kb on + strand, within AO356_15105 at 3416.214 kb on + strand, within AO356_15105 at 3416.215 kb on - strand, within AO356_15105 at 3416.428 kb on + strand, within AO356_15105 at 3416.428 kb on + strand, within AO356_15105 at 3416.482 kb on + strand at 3416.482 kb on + strand at 3416.482 kb on + strand at 3416.482 kb on + strand at 3416.483 kb on - strand at 3416.483 kb on - strand at 3416.483 kb on - strand at 3416.532 kb on - strand at 3416.532 kb on - strand at 3416.532 kb on - strand at 3416.533 kb on + strand at 3416.533 kb on + strand at 3416.533 kb on + strand at 3416.533 kb on + strand at 3416.533 kb on + strand at 3416.533 kb on + strand at 3416.533 kb on + strand at 3416.534 kb on - strand at 3416.534 kb on - strand at 3416.534 kb on - strand at 3416.534 kb on - strand at 3416.547 kb on + strand at 3416.548 kb on - strand at 3416.553 kb on - strand at 3416.576 kb on - strand at 3416.606 kb on + strand at 3416.606 kb on + strand at 3416.606 kb on + strand at 3416.606 kb on + strand at 3416.607 kb on - strand at 3416.607 kb on - strand at 3416.607 kb on - strand at 3416.607 kb on - strand at 3416.607 kb on - strand at 3416.618 kb on + strand at 3416.618 kb on + strand at 3416.618 kb on + strand at 3416.618 kb on + strand at 3416.682 kb on + strand at 3416.682 kb on + strand at 3416.683 kb on - strand at 3416.683 kb on - strand at 3416.739 kb on + strand at 3416.739 kb on + strand at 3416.739 kb on + strand at 3416.739 kb on + strand at 3416.740 kb on - strand at 3416.740 kb on - strand at 3416.740 kb on - strand at 3416.740 kb on - strand at 3416.740 kb on - strand at 3416.740 kb on - strand at 3416.740 kb on - strand at 3416.740 kb on - strand at 3416.740 kb on - strand at 3416.740 kb on - strand at 3416.740 kb on - strand at 3416.740 kb on - strand at 3416.740 kb on - strand at 3416.740 kb on - strand at 3416.740 kb on - strand at 3416.740 kb on - strand at 3416.742 kb on - strand at 3416.742 kb on - strand at 3416.792 kb on + strand at 3416.792 kb on + strand at 3416.793 kb on - strand at 3416.818 kb on + strand at 3416.818 kb on + strand at 3416.819 kb on - strand at 3416.859 kb on + strand at 3416.888 kb on - strand at 3417.382 kb on + strand, within AO356_15110 at 3417.382 kb on + strand, within AO356_15110 at 3417.382 kb on + strand, within AO356_15110 at 3417.382 kb on + strand, within AO356_15110 at 3417.383 kb on - strand, within AO356_15110 at 3417.383 kb on - strand, within AO356_15110 at 3417.383 kb on - strand, within AO356_15110 at 3417.383 kb on - strand, within AO356_15110 at 3417.493 kb on + strand, within AO356_15110 at 3417.494 kb on - strand, within AO356_15110
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 2 mg/ml remove 3,414,900 - AO356_15100 0.45 -0.5 3,415,162 + AO356_15100 0.60 +0.1 3,415,163 - AO356_15100 0.60 -2.1 3,415,247 + AO356_15100 0.65 -0.5 3,415,247 + AO356_15100 0.65 +0.3 3,415,304 + AO356_15100 0.68 -1.0 3,415,352 + AO356_15100 0.71 -0.9 3,415,353 - AO356_15100 0.71 +0.0 3,415,353 - AO356_15100 0.71 -0.1 3,415,421 + AO356_15100 0.75 -0.1 3,415,421 + AO356_15100 0.75 +0.2 3,415,421 + AO356_15100 0.75 +1.1 3,415,421 + AO356_15100 0.75 +0.4 3,415,421 + AO356_15100 0.75 -0.6 3,415,422 - AO356_15100 0.75 +0.2 3,415,422 - AO356_15100 0.75 +0.4 3,415,805 + -0.1 3,415,805 + -0.6 3,415,805 + -2.0 3,415,806 - -0.5 3,415,806 - +0.9 3,415,873 + +0.7 3,415,934 + -1.4 3,415,934 + -0.1 3,415,935 - AO356_15105 0.10 +0.8 3,415,935 - AO356_15105 0.10 -0.6 3,415,935 - AO356_15105 0.10 -0.2 3,415,937 - AO356_15105 0.10 -0.8 3,415,937 - AO356_15105 0.10 -0.9 3,415,974 + AO356_15105 0.16 -0.1 3,415,974 + AO356_15105 0.16 +1.2 3,415,974 + AO356_15105 0.16 +0.4 3,415,975 - AO356_15105 0.17 +1.6 3,415,975 - AO356_15105 0.17 -0.3 3,415,975 - AO356_15105 0.17 +0.4 3,415,982 - AO356_15105 0.18 -0.8 3,415,982 - AO356_15105 0.18 -0.6 3,416,214 + AO356_15105 0.55 -0.8 3,416,214 + AO356_15105 0.55 -0.3 3,416,214 + AO356_15105 0.55 +0.5 3,416,215 - AO356_15105 0.55 -0.4 3,416,428 + AO356_15105 0.89 +0.1 3,416,428 + AO356_15105 0.89 -0.8 3,416,482 + -0.2 3,416,482 + -0.3 3,416,482 + -0.2 3,416,482 + +0.5 3,416,483 - +0.1 3,416,483 - +0.3 3,416,483 - +0.4 3,416,532 - +0.1 3,416,532 - -1.0 3,416,532 - -0.3 3,416,533 + +1.0 3,416,533 + -1.3 3,416,533 + -0.7 3,416,533 + +0.6 3,416,533 + -1.1 3,416,533 + +0.0 3,416,533 + -0.3 3,416,534 - -0.2 3,416,534 - -0.5 3,416,534 - -1.0 3,416,534 - -0.1 3,416,547 + -0.5 3,416,548 - -0.1 3,416,553 - -0.9 3,416,576 - +0.0 3,416,606 + -1.4 3,416,606 + -1.0 3,416,606 + -0.0 3,416,606 + +0.2 3,416,607 - +0.5 3,416,607 - +0.6 3,416,607 - +0.6 3,416,607 - +0.1 3,416,607 - +0.3 3,416,618 + -0.1 3,416,618 + +0.9 3,416,618 + -0.5 3,416,618 + -0.6 3,416,682 + -0.4 3,416,682 + +0.2 3,416,683 - +0.3 3,416,683 - -1.2 3,416,739 + -0.3 3,416,739 + +0.7 3,416,739 + +1.2 3,416,739 + -0.7 3,416,740 - +0.4 3,416,740 - -0.4 3,416,740 - -0.6 3,416,740 - +0.6 3,416,740 - +0.6 3,416,740 - +0.9 3,416,740 - +1.4 3,416,740 - -0.8 3,416,740 - +0.6 3,416,740 - -1.1 3,416,740 - +1.1 3,416,740 - -0.3 3,416,740 - +0.2 3,416,740 - -1.0 3,416,740 - +0.1 3,416,740 - +0.4 3,416,742 - +0.5 3,416,742 - -0.2 3,416,792 + +0.6 3,416,792 + -0.2 3,416,793 - -0.6 3,416,818 + +0.8 3,416,818 + -0.3 3,416,819 - -0.0 3,416,859 + +0.0 3,416,888 - +0.1 3,417,382 + AO356_15110 0.10 -0.2 3,417,382 + AO356_15110 0.10 +0.4 3,417,382 + AO356_15110 0.10 -0.6 3,417,382 + AO356_15110 0.10 -1.0 3,417,383 - AO356_15110 0.10 +0.2 3,417,383 - AO356_15110 0.10 -0.2 3,417,383 - AO356_15110 0.10 +0.9 3,417,383 - AO356_15110 0.10 +0.2 3,417,493 + AO356_15110 0.13 -0.7 3,417,494 - AO356_15110 0.13 +1.2
Or see this region's nucleotide sequence