Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03800

Experiment: Bacitracin 2 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_03795 and AO356_03800 are separated by 88 nucleotidesAO356_03800 and AO356_03805 are separated by 31 nucleotides AO356_03795: AO356_03795 - flagellar hook-length control protein, at 840,711 to 842,084 _03795 AO356_03800: AO356_03800 - histidine kinase, at 842,173 to 842,517 _03800 AO356_03805: AO356_03805 - chemotaxis protein CheY, at 842,549 to 844,255 _03805 Position (kb) 842 843Strain fitness (log2 ratio) -3 -2 -1 0 1at 841.988 kb on + strandat 842.085 kb on - strandat 842.112 kb on + strandat 842.112 kb on + strandat 842.112 kb on + strandat 842.112 kb on + strandat 842.113 kb on - strandat 842.113 kb on - strandat 842.113 kb on - strandat 842.113 kb on - strandat 842.116 kb on + strandat 842.116 kb on + strandat 842.116 kb on + strandat 842.117 kb on - strandat 842.128 kb on + strandat 842.128 kb on + strandat 842.129 kb on - strandat 842.129 kb on - strandat 842.437 kb on - strand, within AO356_03800at 842.437 kb on - strand, within AO356_03800at 842.550 kb on + strandat 842.551 kb on - strandat 842.588 kb on - strandat 842.781 kb on + strand, within AO356_03805at 842.782 kb on - strand, within AO356_03805at 842.809 kb on + strand, within AO356_03805at 842.809 kb on + strand, within AO356_03805at 842.810 kb on - strand, within AO356_03805at 842.810 kb on - strand, within AO356_03805at 842.823 kb on + strand, within AO356_03805at 842.823 kb on + strand, within AO356_03805at 842.823 kb on + strand, within AO356_03805at 842.823 kb on + strand, within AO356_03805at 842.824 kb on - strand, within AO356_03805at 842.824 kb on - strand, within AO356_03805at 842.824 kb on - strand, within AO356_03805at 842.824 kb on - strand, within AO356_03805at 842.901 kb on + strand, within AO356_03805at 842.901 kb on + strand, within AO356_03805at 842.901 kb on + strand, within AO356_03805at 842.901 kb on + strand, within AO356_03805at 842.920 kb on + strand, within AO356_03805at 842.920 kb on + strand, within AO356_03805at 842.921 kb on - strand, within AO356_03805at 842.922 kb on + strand, within AO356_03805at 842.922 kb on + strand, within AO356_03805at 842.923 kb on - strand, within AO356_03805at 842.923 kb on - strand, within AO356_03805at 842.980 kb on - strand, within AO356_03805at 843.070 kb on - strand, within AO356_03805at 843.070 kb on - strand, within AO356_03805at 843.269 kb on + strand, within AO356_03805at 843.269 kb on + strand, within AO356_03805at 843.269 kb on + strand, within AO356_03805at 843.270 kb on - strand, within AO356_03805at 843.270 kb on - strand, within AO356_03805at 843.272 kb on + strand, within AO356_03805at 843.273 kb on - strand, within AO356_03805at 843.273 kb on - strand, within AO356_03805at 843.273 kb on - strand, within AO356_03805at 843.392 kb on - strand, within AO356_03805at 843.392 kb on - strand, within AO356_03805at 843.392 kb on - strand, within AO356_03805at 843.421 kb on - strand, within AO356_03805

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 2 mg/ml
remove
841,988 + -0.4
842,085 - -0.4
842,112 + +1.0
842,112 + -0.0
842,112 + +0.2
842,112 + +1.0
842,113 - -0.4
842,113 - -0.3
842,113 - +1.0
842,113 - +0.3
842,116 + -0.8
842,116 + +0.1
842,116 + -0.2
842,117 - +0.2
842,128 + -0.2
842,128 + +0.9
842,129 - +0.1
842,129 - -0.1
842,437 - AO356_03800 0.77 -3.2
842,437 - AO356_03800 0.77 -1.2
842,550 + -2.5
842,551 - -0.2
842,588 - +0.9
842,781 + AO356_03805 0.14 +0.5
842,782 - AO356_03805 0.14 -0.1
842,809 + AO356_03805 0.15 +0.1
842,809 + AO356_03805 0.15 +0.3
842,810 - AO356_03805 0.15 +0.5
842,810 - AO356_03805 0.15 -0.0
842,823 + AO356_03805 0.16 +0.9
842,823 + AO356_03805 0.16 +0.0
842,823 + AO356_03805 0.16 +0.5
842,823 + AO356_03805 0.16 -1.1
842,824 - AO356_03805 0.16 +0.0
842,824 - AO356_03805 0.16 -0.1
842,824 - AO356_03805 0.16 +0.7
842,824 - AO356_03805 0.16 -0.3
842,901 + AO356_03805 0.21 +0.5
842,901 + AO356_03805 0.21 -0.2
842,901 + AO356_03805 0.21 -0.6
842,901 + AO356_03805 0.21 -0.7
842,920 + AO356_03805 0.22 -0.3
842,920 + AO356_03805 0.22 +0.5
842,921 - AO356_03805 0.22 -0.0
842,922 + AO356_03805 0.22 +0.0
842,922 + AO356_03805 0.22 +0.7
842,923 - AO356_03805 0.22 -0.1
842,923 - AO356_03805 0.22 +0.4
842,980 - AO356_03805 0.25 +0.9
843,070 - AO356_03805 0.31 -0.3
843,070 - AO356_03805 0.31 -0.8
843,269 + AO356_03805 0.42 +1.0
843,269 + AO356_03805 0.42 +0.7
843,269 + AO356_03805 0.42 +0.5
843,270 - AO356_03805 0.42 +0.3
843,270 - AO356_03805 0.42 +0.3
843,272 + AO356_03805 0.42 +0.9
843,273 - AO356_03805 0.42 +0.3
843,273 - AO356_03805 0.42 -0.0
843,273 - AO356_03805 0.42 +0.1
843,392 - AO356_03805 0.49 +1.3
843,392 - AO356_03805 0.49 +0.6
843,392 - AO356_03805 0.49 +1.0
843,421 - AO356_03805 0.51 -0.2

Or see this region's nucleotide sequence