Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00325

Experiment: Bacitracin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00320 and AO356_00325 are separated by 145 nucleotidesAO356_00325 and AO356_00330 are separated by 1 nucleotides AO356_00320: AO356_00320 - hypothetical protein, at 59,499 to 60,803 _00320 AO356_00325: AO356_00325 - RNA helicase, at 60,949 to 63,414 _00325 AO356_00330: AO356_00330 - hypothetical protein, at 63,416 to 64,216 _00330 Position (kb) 60 61 62 63 64Strain fitness (log2 ratio) -2 -1 0 1 2at 59.966 kb on - strand, within AO356_00320at 59.966 kb on - strand, within AO356_00320at 59.966 kb on - strand, within AO356_00320at 59.966 kb on - strand, within AO356_00320at 59.984 kb on + strand, within AO356_00320at 60.117 kb on + strand, within AO356_00320at 60.118 kb on - strand, within AO356_00320at 60.184 kb on + strand, within AO356_00320at 60.184 kb on + strand, within AO356_00320at 60.185 kb on - strand, within AO356_00320at 60.203 kb on - strand, within AO356_00320at 60.279 kb on + strand, within AO356_00320at 60.279 kb on + strand, within AO356_00320at 60.280 kb on - strand, within AO356_00320at 60.325 kb on - strand, within AO356_00320at 60.325 kb on - strand, within AO356_00320at 60.415 kb on - strand, within AO356_00320at 60.415 kb on - strand, within AO356_00320at 60.415 kb on - strand, within AO356_00320at 60.415 kb on - strand, within AO356_00320at 60.466 kb on + strand, within AO356_00320at 60.467 kb on - strand, within AO356_00320at 60.467 kb on - strand, within AO356_00320at 60.488 kb on - strand, within AO356_00320at 60.488 kb on - strand, within AO356_00320at 60.488 kb on - strand, within AO356_00320at 60.584 kb on - strand, within AO356_00320at 60.584 kb on - strand, within AO356_00320at 60.836 kb on + strandat 60.836 kb on + strandat 60.837 kb on - strandat 60.837 kb on - strandat 60.837 kb on - strandat 60.906 kb on - strandat 61.115 kb on + strandat 61.116 kb on - strandat 61.160 kb on + strandat 61.160 kb on + strandat 61.161 kb on - strandat 61.161 kb on - strandat 61.176 kb on - strandat 61.176 kb on - strandat 61.281 kb on + strand, within AO356_00325at 61.281 kb on + strand, within AO356_00325at 61.282 kb on - strand, within AO356_00325at 61.282 kb on - strand, within AO356_00325at 61.284 kb on + strand, within AO356_00325at 61.284 kb on + strand, within AO356_00325at 61.285 kb on - strand, within AO356_00325at 61.285 kb on - strand, within AO356_00325at 61.285 kb on - strand, within AO356_00325at 61.351 kb on - strand, within AO356_00325at 61.412 kb on + strand, within AO356_00325at 61.641 kb on + strand, within AO356_00325at 61.714 kb on - strand, within AO356_00325at 61.718 kb on + strand, within AO356_00325at 61.878 kb on + strand, within AO356_00325at 61.879 kb on - strand, within AO356_00325at 61.884 kb on - strand, within AO356_00325at 61.924 kb on + strand, within AO356_00325at 61.937 kb on + strand, within AO356_00325at 61.937 kb on + strand, within AO356_00325at 61.937 kb on + strand, within AO356_00325at 61.972 kb on - strand, within AO356_00325at 61.972 kb on - strand, within AO356_00325at 62.151 kb on + strand, within AO356_00325at 62.152 kb on - strand, within AO356_00325at 62.172 kb on - strand, within AO356_00325at 62.207 kb on + strand, within AO356_00325at 62.207 kb on + strand, within AO356_00325at 62.208 kb on - strand, within AO356_00325at 62.208 kb on - strand, within AO356_00325at 62.208 kb on - strand, within AO356_00325at 62.208 kb on - strand, within AO356_00325at 62.211 kb on + strand, within AO356_00325at 62.211 kb on + strand, within AO356_00325at 62.211 kb on + strand, within AO356_00325at 62.212 kb on - strand, within AO356_00325at 62.212 kb on - strand, within AO356_00325at 62.212 kb on - strand, within AO356_00325at 62.243 kb on + strand, within AO356_00325at 62.244 kb on - strand, within AO356_00325at 62.266 kb on + strand, within AO356_00325at 62.266 kb on + strand, within AO356_00325at 62.267 kb on - strand, within AO356_00325at 62.267 kb on - strand, within AO356_00325at 62.366 kb on + strand, within AO356_00325at 62.420 kb on + strand, within AO356_00325at 62.420 kb on + strand, within AO356_00325at 62.420 kb on + strand, within AO356_00325at 62.462 kb on + strand, within AO356_00325at 62.462 kb on + strand, within AO356_00325at 62.462 kb on + strand, within AO356_00325at 62.463 kb on - strand, within AO356_00325at 62.463 kb on - strand, within AO356_00325at 62.496 kb on + strand, within AO356_00325at 62.511 kb on - strand, within AO356_00325at 62.511 kb on - strand, within AO356_00325at 62.531 kb on + strand, within AO356_00325at 62.531 kb on + strand, within AO356_00325at 62.531 kb on + strand, within AO356_00325at 62.531 kb on + strand, within AO356_00325at 62.532 kb on - strand, within AO356_00325at 62.532 kb on - strand, within AO356_00325at 62.600 kb on - strand, within AO356_00325at 62.637 kb on + strand, within AO356_00325at 62.638 kb on - strand, within AO356_00325at 62.728 kb on - strand, within AO356_00325at 62.816 kb on + strand, within AO356_00325at 62.816 kb on + strand, within AO356_00325at 62.816 kb on + strand, within AO356_00325at 62.901 kb on + strand, within AO356_00325at 62.901 kb on + strand, within AO356_00325at 62.902 kb on - strand, within AO356_00325at 62.902 kb on - strand, within AO356_00325at 62.902 kb on - strand, within AO356_00325at 62.902 kb on - strand, within AO356_00325at 62.971 kb on - strand, within AO356_00325at 63.006 kb on + strand, within AO356_00325at 63.006 kb on + strand, within AO356_00325at 63.006 kb on + strand, within AO356_00325at 63.006 kb on + strand, within AO356_00325at 63.006 kb on + strand, within AO356_00325at 63.007 kb on - strand, within AO356_00325at 63.007 kb on - strand, within AO356_00325at 63.089 kb on + strand, within AO356_00325at 63.090 kb on - strand, within AO356_00325at 63.090 kb on - strand, within AO356_00325at 63.147 kb on - strand, within AO356_00325at 63.158 kb on - strand, within AO356_00325at 63.193 kb on + strandat 63.193 kb on + strandat 63.194 kb on - strandat 63.200 kb on + strandat 63.213 kb on - strandat 63.233 kb on + strandat 63.286 kb on - strandat 63.363 kb on - strandat 63.399 kb on + strandat 63.399 kb on + strandat 63.418 kb on - strandat 63.418 kb on - strandat 63.418 kb on - strandat 63.513 kb on - strand, within AO356_00330at 63.541 kb on + strand, within AO356_00330at 63.541 kb on + strand, within AO356_00330at 63.679 kb on + strand, within AO356_00330at 63.679 kb on + strand, within AO356_00330at 63.680 kb on - strand, within AO356_00330at 63.680 kb on - strand, within AO356_00330at 63.680 kb on - strand, within AO356_00330at 63.680 kb on - strand, within AO356_00330at 63.680 kb on - strand, within AO356_00330at 63.877 kb on - strand, within AO356_00330at 63.877 kb on - strand, within AO356_00330at 63.877 kb on - strand, within AO356_00330at 63.878 kb on + strand, within AO356_00330at 63.879 kb on - strand, within AO356_00330at 63.879 kb on - strand, within AO356_00330at 63.879 kb on - strand, within AO356_00330at 63.919 kb on + strand, within AO356_00330at 63.998 kb on - strand, within AO356_00330at 63.998 kb on - strand, within AO356_00330at 64.030 kb on - strand, within AO356_00330at 64.065 kb on + strand, within AO356_00330at 64.066 kb on - strand, within AO356_00330at 64.066 kb on - strand, within AO356_00330at 64.071 kb on + strand, within AO356_00330at 64.071 kb on + strand, within AO356_00330at 64.071 kb on + strand, within AO356_00330at 64.145 kb on - strandat 64.145 kb on - strandat 64.182 kb on + strandat 64.182 kb on + strandat 64.182 kb on + strandat 64.190 kb on + strandat 64.191 kb on - strandat 64.217 kb on - strandat 64.235 kb on + strandat 64.235 kb on + strandat 64.235 kb on + strandat 64.236 kb on - strandat 64.335 kb on - strandat 64.335 kb on - strandat 64.382 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 2 mg/ml
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59,966 - AO356_00320 0.36 +1.1
59,966 - AO356_00320 0.36 +0.6
59,966 - AO356_00320 0.36 +0.0
59,966 - AO356_00320 0.36 +0.1
59,984 + AO356_00320 0.37 +1.5
60,117 + AO356_00320 0.47 -0.2
60,118 - AO356_00320 0.47 +0.3
60,184 + AO356_00320 0.52 +0.4
60,184 + AO356_00320 0.52 -0.6
60,185 - AO356_00320 0.53 -0.5
60,203 - AO356_00320 0.54 +0.7
60,279 + AO356_00320 0.60 -1.3
60,279 + AO356_00320 0.60 -1.4
60,280 - AO356_00320 0.60 +1.2
60,325 - AO356_00320 0.63 +0.4
60,325 - AO356_00320 0.63 +2.7
60,415 - AO356_00320 0.70 +0.1
60,415 - AO356_00320 0.70 +1.3
60,415 - AO356_00320 0.70 -0.5
60,415 - AO356_00320 0.70 -0.4
60,466 + AO356_00320 0.74 -0.1
60,467 - AO356_00320 0.74 -0.5
60,467 - AO356_00320 0.74 +0.7
60,488 - AO356_00320 0.76 -0.9
60,488 - AO356_00320 0.76 +0.8
60,488 - AO356_00320 0.76 -0.0
60,584 - AO356_00320 0.83 -0.3
60,584 - AO356_00320 0.83 -0.7
60,836 + +1.5
60,836 + +0.8
60,837 - -1.5
60,837 - +1.0
60,837 - -0.2
60,906 - +0.9
61,115 + +2.2
61,116 - +1.0
61,160 + +1.7
61,160 + -0.0
61,161 - +0.7
61,161 - -0.3
61,176 - +0.1
61,176 - +0.2
61,281 + AO356_00325 0.13 +0.9
61,281 + AO356_00325 0.13 -0.0
61,282 - AO356_00325 0.14 +0.1
61,282 - AO356_00325 0.14 +0.9
61,284 + AO356_00325 0.14 -0.5
61,284 + AO356_00325 0.14 +0.3
61,285 - AO356_00325 0.14 -0.1
61,285 - AO356_00325 0.14 -1.4
61,285 - AO356_00325 0.14 +0.0
61,351 - AO356_00325 0.16 +0.4
61,412 + AO356_00325 0.19 +1.1
61,641 + AO356_00325 0.28 +1.0
61,714 - AO356_00325 0.31 +0.3
61,718 + AO356_00325 0.31 -0.1
61,878 + AO356_00325 0.38 +0.7
61,879 - AO356_00325 0.38 -0.3
61,884 - AO356_00325 0.38 -0.8
61,924 + AO356_00325 0.40 +0.3
61,937 + AO356_00325 0.40 -0.2
61,937 + AO356_00325 0.40 -0.0
61,937 + AO356_00325 0.40 +0.2
61,972 - AO356_00325 0.41 +0.2
61,972 - AO356_00325 0.41 +0.2
62,151 + AO356_00325 0.49 +0.4
62,152 - AO356_00325 0.49 +0.0
62,172 - AO356_00325 0.50 +0.5
62,207 + AO356_00325 0.51 +0.4
62,207 + AO356_00325 0.51 -0.5
62,208 - AO356_00325 0.51 +0.3
62,208 - AO356_00325 0.51 +1.0
62,208 - AO356_00325 0.51 +0.3
62,208 - AO356_00325 0.51 +0.5
62,211 + AO356_00325 0.51 -0.5
62,211 + AO356_00325 0.51 +0.0
62,211 + AO356_00325 0.51 +1.2
62,212 - AO356_00325 0.51 +1.0
62,212 - AO356_00325 0.51 +0.5
62,212 - AO356_00325 0.51 -0.4
62,243 + AO356_00325 0.52 +0.4
62,244 - AO356_00325 0.53 +0.9
62,266 + AO356_00325 0.53 +0.4
62,266 + AO356_00325 0.53 +0.7
62,267 - AO356_00325 0.53 -0.6
62,267 - AO356_00325 0.53 +0.1
62,366 + AO356_00325 0.57 +0.3
62,420 + AO356_00325 0.60 +0.9
62,420 + AO356_00325 0.60 -0.3
62,420 + AO356_00325 0.60 +0.4
62,462 + AO356_00325 0.61 +0.1
62,462 + AO356_00325 0.61 -1.0
62,462 + AO356_00325 0.61 +0.5
62,463 - AO356_00325 0.61 +0.3
62,463 - AO356_00325 0.61 -0.0
62,496 + AO356_00325 0.63 +0.1
62,511 - AO356_00325 0.63 +0.2
62,511 - AO356_00325 0.63 +1.2
62,531 + AO356_00325 0.64 -1.0
62,531 + AO356_00325 0.64 +0.5
62,531 + AO356_00325 0.64 -0.2
62,531 + AO356_00325 0.64 +0.3
62,532 - AO356_00325 0.64 +1.0
62,532 - AO356_00325 0.64 +0.9
62,600 - AO356_00325 0.67 -0.5
62,637 + AO356_00325 0.68 -1.1
62,638 - AO356_00325 0.68 -0.2
62,728 - AO356_00325 0.72 +0.4
62,816 + AO356_00325 0.76 -0.2
62,816 + AO356_00325 0.76 +1.0
62,816 + AO356_00325 0.76 +0.5
62,901 + AO356_00325 0.79 -0.5
62,901 + AO356_00325 0.79 +0.2
62,902 - AO356_00325 0.79 +0.7
62,902 - AO356_00325 0.79 -0.1
62,902 - AO356_00325 0.79 +0.1
62,902 - AO356_00325 0.79 -2.1
62,971 - AO356_00325 0.82 +0.9
63,006 + AO356_00325 0.83 +0.3
63,006 + AO356_00325 0.83 +0.1
63,006 + AO356_00325 0.83 -0.9
63,006 + AO356_00325 0.83 -0.9
63,006 + AO356_00325 0.83 +0.5
63,007 - AO356_00325 0.83 -0.2
63,007 - AO356_00325 0.83 +0.4
63,089 + AO356_00325 0.87 -1.1
63,090 - AO356_00325 0.87 +0.5
63,090 - AO356_00325 0.87 -0.3
63,147 - AO356_00325 0.89 +0.4
63,158 - AO356_00325 0.90 +0.9
63,193 + -0.3
63,193 + +0.5
63,194 - +0.2
63,200 + +0.2
63,213 - -0.9
63,233 + -0.3
63,286 - -0.2
63,363 - -0.0
63,399 + -1.6
63,399 + -0.2
63,418 - -0.3
63,418 - +0.3
63,418 - -1.0
63,513 - AO356_00330 0.12 -1.7
63,541 + AO356_00330 0.16 -0.7
63,541 + AO356_00330 0.16 +0.2
63,679 + AO356_00330 0.33 -1.3
63,679 + AO356_00330 0.33 +0.6
63,680 - AO356_00330 0.33 +0.1
63,680 - AO356_00330 0.33 -0.9
63,680 - AO356_00330 0.33 +0.4
63,680 - AO356_00330 0.33 +0.2
63,680 - AO356_00330 0.33 -0.4
63,877 - AO356_00330 0.58 +0.3
63,877 - AO356_00330 0.58 +0.3
63,877 - AO356_00330 0.58 -0.2
63,878 + AO356_00330 0.58 -0.8
63,879 - AO356_00330 0.58 +0.7
63,879 - AO356_00330 0.58 -1.2
63,879 - AO356_00330 0.58 -2.3
63,919 + AO356_00330 0.63 -0.3
63,998 - AO356_00330 0.73 -0.5
63,998 - AO356_00330 0.73 -0.8
64,030 - AO356_00330 0.77 +0.2
64,065 + AO356_00330 0.81 +0.1
64,066 - AO356_00330 0.81 +0.2
64,066 - AO356_00330 0.81 +0.8
64,071 + AO356_00330 0.82 +0.2
64,071 + AO356_00330 0.82 +0.5
64,071 + AO356_00330 0.82 -0.4
64,145 - +0.2
64,145 - +0.1
64,182 + -1.4
64,182 + -0.5
64,182 + -1.7
64,190 + +0.5
64,191 - -0.3
64,217 - +0.5
64,235 + -0.5
64,235 + +0.3
64,235 + +0.2
64,236 - -0.0
64,335 - -1.0
64,335 - +0.3
64,382 - +1.5

Or see this region's nucleotide sequence