Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3628 and Shew_3629 overlap by 7 nucleotides Shew_3629 and Shew_3630 are separated by 31 nucleotides Shew_3630 and Shew_3631 are separated by 58 nucleotides Shew_3631 and Shew_3632 overlap by 8 nucleotides
Shew_3628: Shew_3628 - MgtC/SapB transporter (RefSeq), at 4,326,813 to 4,327,295
_3628
Shew_3629: Shew_3629 - competence protein ComF (RefSeq), at 4,327,289 to 4,328,047
_3629
Shew_3630: Shew_3630 - bioH protein (RefSeq), at 4,328,079 to 4,328,858
_3630
Shew_3631: Shew_3631 - hypothetical protein (RefSeq), at 4,328,917 to 4,329,411
_3631
Shew_3632: Shew_3632 - sulfatase (RefSeq), at 4,329,404 to 4,331,392
_3632
Position (kb) 4328
4329 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4327.525 kb on + strand, within Shew_3629 at 4327.868 kb on + strand, within Shew_3629 at 4328.056 kb on + strand at 4328.349 kb on + strand, within Shew_3630 at 4328.357 kb on - strand, within Shew_3630 at 4328.570 kb on - strand, within Shew_3630 at 4328.834 kb on - strand at 4329.085 kb on - strand, within Shew_3631 at 4329.289 kb on + strand, within Shew_3631 at 4329.434 kb on + strand at 4329.457 kb on - strand at 4329.548 kb on + strand at 4329.751 kb on - strand, within Shew_3632 at 4329.762 kb on - strand, within Shew_3632 at 4329.838 kb on + strand, within Shew_3632 at 4329.850 kb on + strand, within Shew_3632
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,327,525 + Shew_3629 0.31 -0.0 4,327,868 + Shew_3629 0.76 +0.1 4,328,056 + +0.1 4,328,349 + Shew_3630 0.35 -3.0 4,328,357 - Shew_3630 0.36 -2.9 4,328,570 - Shew_3630 0.63 -1.6 4,328,834 - -3.5 4,329,085 - Shew_3631 0.34 +0.4 4,329,289 + Shew_3631 0.75 +0.4 4,329,434 + +0.0 4,329,457 - +0.0 4,329,548 + +0.5 4,329,751 - Shew_3632 0.17 -0.9 4,329,762 - Shew_3632 0.18 -0.1 4,329,838 + Shew_3632 0.22 +0.5 4,329,850 + Shew_3632 0.22 +0.1
Or see this region's nucleotide sequence