Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1149 and Shew_1150 are separated by 85 nucleotides Shew_1150 and Shew_1151 are separated by 216 nucleotides Shew_1151 and Shew_1152 are separated by 29 nucleotides Shew_1152 and Shew_1153 are separated by 81 nucleotides
Shew_1149: Shew_1149 - LysR family transcriptional regulator (RefSeq), at 1,323,548 to 1,324,423
_1149
Shew_1150: Shew_1150 - transmembrane pair domain-containing protein (RefSeq), at 1,324,509 to 1,324,931
_1150
Shew_1151: Shew_1151 - OmpA/MotB domain-containing protein (RefSeq), at 1,325,148 to 1,325,852
_1151
Shew_1152: Shew_1152 - MscS mechanosensitive ion channel (RefSeq), at 1,325,882 to 1,326,706
_1152
Shew_1153: Shew_1153 - no description, at 1,326,788 to 1,326,934
_1153
Position (kb)
1325
1326 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1324.564 kb on + strand, within Shew_1150 at 1324.570 kb on - strand, within Shew_1150 at 1324.572 kb on - strand, within Shew_1150 at 1324.648 kb on - strand, within Shew_1150 at 1324.768 kb on + strand, within Shew_1150 at 1324.925 kb on + strand at 1325.090 kb on + strand at 1325.105 kb on + strand at 1325.229 kb on + strand, within Shew_1151 at 1325.318 kb on + strand, within Shew_1151 at 1325.463 kb on + strand, within Shew_1151 at 1325.495 kb on + strand, within Shew_1151 at 1325.571 kb on - strand, within Shew_1151 at 1326.098 kb on + strand, within Shew_1152 at 1326.430 kb on + strand, within Shew_1152 at 1326.767 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,324,564 + Shew_1150 0.13 -0.4 1,324,570 - Shew_1150 0.14 -0.1 1,324,572 - Shew_1150 0.15 -0.3 1,324,648 - Shew_1150 0.33 -0.1 1,324,768 + Shew_1150 0.61 +0.1 1,324,925 + +0.6 1,325,090 + +0.1 1,325,105 + -0.3 1,325,229 + Shew_1151 0.11 -1.1 1,325,318 + Shew_1151 0.24 -0.9 1,325,463 + Shew_1151 0.45 +0.4 1,325,495 + Shew_1151 0.49 -0.1 1,325,571 - Shew_1151 0.60 -2.1 1,326,098 + Shew_1152 0.26 -3.7 1,326,430 + Shew_1152 0.66 -4.4 1,326,767 - -0.0
Or see this region's nucleotide sequence