Strain Fitness in Shewanella loihica PV-4 around Shew_1041

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1040 and thyA are separated by 122 nucleotidesthyA and Shew_1042 are separated by 306 nucleotides Shew_1040: Shew_1040 - hypothetical protein (RefSeq), at 1,204,127 to 1,204,921 _1040 Shew_1041: thyA - thymidylate synthase (RefSeq), at 1,205,044 to 1,205,895 thyA Shew_1042: Shew_1042 - Na+/H+ antiporter NhaA (RefSeq), at 1,206,202 to 1,207,377 _1042 Position (kb) 1205 1206Strain fitness (log2 ratio) -1 0 1at 1206.698 kb on + strand, within Shew_1042at 1206.861 kb on - strand, within Shew_1042at 1206.871 kb on - strand, within Shew_1042at 1206.880 kb on + strand, within Shew_1042at 1206.880 kb on + strand, within Shew_1042

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,206,698 + Shew_1042 0.42 +0.1
1,206,861 - Shew_1042 0.56 +0.4
1,206,871 - Shew_1042 0.57 -0.1
1,206,880 + Shew_1042 0.58 -0.0
1,206,880 + Shew_1042 0.58 -0.2

Or see this region's nucleotide sequence