Experiment: m.b. Chloride 600 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1001 and Dshi_1002 are separated by 132 nucleotides Dshi_1002 and Dshi_1003 are separated by 14 nucleotides
Dshi_1001: Dshi_1001 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (RefSeq), at 1,034,458 to 1,035,408
_1001
Dshi_1002: Dshi_1002 - Cystathionine gamma-synthase (RefSeq), at 1,035,541 to 1,036,683
_1002
Dshi_1003: Dshi_1003 - aminoglycoside phosphotransferase (RefSeq), at 1,036,698 to 1,037,711
_1003
Position (kb)
1035
1036
1037 Strain fitness (log2 ratio)
-2
-1
0
1 at 1034.593 kb on - strand, within Dshi_1001 at 1034.635 kb on + strand, within Dshi_1001 at 1034.672 kb on + strand, within Dshi_1001 at 1034.730 kb on + strand, within Dshi_1001 at 1034.737 kb on - strand, within Dshi_1001 at 1034.803 kb on + strand, within Dshi_1001 at 1034.866 kb on - strand, within Dshi_1001 at 1034.866 kb on - strand, within Dshi_1001 at 1034.926 kb on - strand, within Dshi_1001 at 1035.042 kb on + strand, within Dshi_1001 at 1035.075 kb on + strand, within Dshi_1001 at 1035.175 kb on + strand, within Dshi_1001 at 1035.188 kb on - strand, within Dshi_1001 at 1035.379 kb on - strand at 1035.612 kb on + strand at 1035.779 kb on + strand, within Dshi_1002 at 1035.779 kb on + strand, within Dshi_1002 at 1035.783 kb on - strand, within Dshi_1002 at 1035.901 kb on - strand, within Dshi_1002 at 1035.958 kb on - strand, within Dshi_1002 at 1036.118 kb on - strand, within Dshi_1002 at 1036.120 kb on - strand, within Dshi_1002 at 1036.131 kb on - strand, within Dshi_1002 at 1036.489 kb on + strand, within Dshi_1002 at 1036.541 kb on + strand, within Dshi_1002 at 1036.871 kb on - strand, within Dshi_1003 at 1036.886 kb on - strand, within Dshi_1003 at 1036.929 kb on + strand, within Dshi_1003 at 1036.944 kb on + strand, within Dshi_1003 at 1037.025 kb on + strand, within Dshi_1003 at 1037.089 kb on + strand, within Dshi_1003 at 1037.208 kb on + strand, within Dshi_1003 at 1037.363 kb on - strand, within Dshi_1003 at 1037.481 kb on + strand, within Dshi_1003 at 1037.530 kb on + strand, within Dshi_1003 at 1037.530 kb on + strand, within Dshi_1003 at 1037.653 kb on + strand at 1037.679 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 600 mM remove 1,034,593 - Dshi_1001 0.14 -2.0 1,034,635 + Dshi_1001 0.19 -1.0 1,034,672 + Dshi_1001 0.23 -2.0 1,034,730 + Dshi_1001 0.29 +0.7 1,034,737 - Dshi_1001 0.29 +0.3 1,034,803 + Dshi_1001 0.36 -0.1 1,034,866 - Dshi_1001 0.43 -0.2 1,034,866 - Dshi_1001 0.43 -0.4 1,034,926 - Dshi_1001 0.49 +1.1 1,035,042 + Dshi_1001 0.61 +0.6 1,035,075 + Dshi_1001 0.65 -0.5 1,035,175 + Dshi_1001 0.75 +0.6 1,035,188 - Dshi_1001 0.77 +1.5 1,035,379 - -0.2 1,035,612 + +0.1 1,035,779 + Dshi_1002 0.21 +0.5 1,035,779 + Dshi_1002 0.21 -0.2 1,035,783 - Dshi_1002 0.21 -0.8 1,035,901 - Dshi_1002 0.31 -0.5 1,035,958 - Dshi_1002 0.36 -0.6 1,036,118 - Dshi_1002 0.50 -0.9 1,036,120 - Dshi_1002 0.51 -0.2 1,036,131 - Dshi_1002 0.52 -0.6 1,036,489 + Dshi_1002 0.83 +1.4 1,036,541 + Dshi_1002 0.87 +0.2 1,036,871 - Dshi_1003 0.17 -0.0 1,036,886 - Dshi_1003 0.19 +0.1 1,036,929 + Dshi_1003 0.23 -0.3 1,036,944 + Dshi_1003 0.24 +0.2 1,037,025 + Dshi_1003 0.32 +0.2 1,037,089 + Dshi_1003 0.39 +1.1 1,037,208 + Dshi_1003 0.50 +0.8 1,037,363 - Dshi_1003 0.66 -0.0 1,037,481 + Dshi_1003 0.77 +0.0 1,037,530 + Dshi_1003 0.82 +1.3 1,037,530 + Dshi_1003 0.82 +0.4 1,037,653 + +0.0 1,037,679 + -0.4
Or see this region's nucleotide sequence