Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2282

Experiment: MoLS4 with L-Serine (N), without Molybdate/Tungstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttorS and DVU2282 are separated by 269 nucleotidesDVU2282 and DVU2283 are separated by 176 nucleotidesDVU2283 and DVU2284 are separated by 58 nucleotides DVU2281: torS - sensor histidine kinase/response regulator (TIGR), at 2,369,933 to 2,372,134 torS DVU2282: DVU2282 - hypothetical protein (TIGR), at 2,372,404 to 2,373,954 DVU2282 DVU2283: DVU2283 - hypothetical protein (TIGR), at 2,374,131 to 2,374,232 DVU2283 DVU2284: DVU2284 - hypothetical protein (TIGR), at 2,374,291 to 2,374,803 DVU2284 Position (kb) 2372 2373 2374Strain fitness (log2 ratio) -1 0 1at 2371.427 kb on - strand, within torSat 2371.543 kb on - strand, within torSat 2371.549 kb on - strand, within torSat 2371.554 kb on + strand, within torSat 2371.618 kb on + strand, within torSat 2371.672 kb on + strand, within torSat 2371.677 kb on + strand, within torSat 2371.725 kb on - strand, within torSat 2371.749 kb on - strand, within torSat 2371.833 kb on - strand, within torSat 2371.839 kb on + strand, within torSat 2371.900 kb on + strand, within torSat 2371.900 kb on + strand, within torSat 2371.906 kb on + strand, within torSat 2371.906 kb on + strand, within torSat 2372.071 kb on + strandat 2372.137 kb on - strandat 2372.151 kb on + strandat 2372.173 kb on + strandat 2372.551 kb on + strandat 2372.572 kb on + strand, within DVU2282at 2372.623 kb on - strand, within DVU2282at 2372.625 kb on + strand, within DVU2282at 2372.658 kb on + strand, within DVU2282at 2372.666 kb on - strand, within DVU2282at 2372.693 kb on + strand, within DVU2282at 2372.708 kb on + strand, within DVU2282at 2372.708 kb on + strand, within DVU2282at 2372.716 kb on - strand, within DVU2282at 2372.716 kb on - strand, within DVU2282at 2372.760 kb on - strand, within DVU2282at 2372.780 kb on - strand, within DVU2282at 2372.886 kb on - strand, within DVU2282at 2372.995 kb on - strand, within DVU2282at 2373.081 kb on - strand, within DVU2282at 2373.094 kb on + strand, within DVU2282at 2373.204 kb on + strand, within DVU2282at 2373.204 kb on + strand, within DVU2282at 2373.212 kb on - strand, within DVU2282at 2373.218 kb on - strand, within DVU2282at 2373.268 kb on + strand, within DVU2282at 2373.276 kb on - strand, within DVU2282at 2373.278 kb on - strand, within DVU2282at 2373.372 kb on + strand, within DVU2282at 2373.393 kb on + strand, within DVU2282at 2373.419 kb on + strand, within DVU2282at 2373.478 kb on - strand, within DVU2282at 2373.554 kb on - strand, within DVU2282at 2373.583 kb on - strand, within DVU2282at 2373.631 kb on + strand, within DVU2282at 2373.649 kb on + strand, within DVU2282at 2373.657 kb on - strand, within DVU2282at 2373.695 kb on + strand, within DVU2282at 2373.720 kb on - strand, within DVU2282at 2373.739 kb on + strand, within DVU2282at 2373.742 kb on - strand, within DVU2282at 2373.830 kb on + strandat 2373.933 kb on + strandat 2374.019 kb on + strandat 2374.111 kb on + strandat 2374.112 kb on - strandat 2374.136 kb on - strandat 2374.142 kb on + strand, within DVU2283at 2374.142 kb on + strand, within DVU2283at 2374.212 kb on - strand, within DVU2283at 2374.418 kb on - strand, within DVU2284at 2374.451 kb on + strand, within DVU2284at 2374.515 kb on + strand, within DVU2284at 2374.515 kb on + strand, within DVU2284at 2374.515 kb on + strand, within DVU2284at 2374.667 kb on + strand, within DVU2284at 2374.667 kb on + strand, within DVU2284at 2374.667 kb on + strand, within DVU2284at 2374.694 kb on - strand, within DVU2284at 2374.694 kb on - strand, within DVU2284at 2374.705 kb on + strand, within DVU2284at 2374.737 kb on - strand, within DVU2284at 2374.834 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N), without Molybdate/Tungstate
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2,371,427 - torS DVU2281 0.68 +0.1
2,371,543 - torS DVU2281 0.73 -0.2
2,371,549 - torS DVU2281 0.73 -0.4
2,371,554 + torS DVU2281 0.74 -0.2
2,371,618 + torS DVU2281 0.77 -0.7
2,371,672 + torS DVU2281 0.79 -0.8
2,371,677 + torS DVU2281 0.79 -1.4
2,371,725 - torS DVU2281 0.81 -1.0
2,371,749 - torS DVU2281 0.82 +0.1
2,371,833 - torS DVU2281 0.86 -0.6
2,371,839 + torS DVU2281 0.87 -0.2
2,371,900 + torS DVU2281 0.89 -0.4
2,371,900 + torS DVU2281 0.89 -0.2
2,371,906 + torS DVU2281 0.90 +1.5
2,371,906 + torS DVU2281 0.90 +0.3
2,372,071 + -0.4
2,372,137 - -0.6
2,372,151 + -1.6
2,372,173 + +1.5
2,372,551 + -0.1
2,372,572 + DVU2282 0.11 -0.8
2,372,623 - DVU2282 0.14 +0.4
2,372,625 + DVU2282 0.14 -0.5
2,372,658 + DVU2282 0.16 -0.1
2,372,666 - DVU2282 0.17 -0.3
2,372,693 + DVU2282 0.19 -0.6
2,372,708 + DVU2282 0.20 +0.9
2,372,708 + DVU2282 0.20 +0.3
2,372,716 - DVU2282 0.20 -0.5
2,372,716 - DVU2282 0.20 +0.0
2,372,760 - DVU2282 0.23 -0.6
2,372,780 - DVU2282 0.24 +0.1
2,372,886 - DVU2282 0.31 -0.6
2,372,995 - DVU2282 0.38 +0.5
2,373,081 - DVU2282 0.44 -0.6
2,373,094 + DVU2282 0.44 -0.9
2,373,204 + DVU2282 0.52 -0.5
2,373,204 + DVU2282 0.52 +1.3
2,373,212 - DVU2282 0.52 -0.2
2,373,218 - DVU2282 0.52 +1.0
2,373,268 + DVU2282 0.56 +0.1
2,373,276 - DVU2282 0.56 -0.0
2,373,278 - DVU2282 0.56 -0.5
2,373,372 + DVU2282 0.62 +0.3
2,373,393 + DVU2282 0.64 +0.2
2,373,419 + DVU2282 0.65 -0.1
2,373,478 - DVU2282 0.69 -0.2
2,373,554 - DVU2282 0.74 -0.7
2,373,583 - DVU2282 0.76 +0.1
2,373,631 + DVU2282 0.79 -0.1
2,373,649 + DVU2282 0.80 -0.0
2,373,657 - DVU2282 0.81 +0.3
2,373,695 + DVU2282 0.83 -0.4
2,373,720 - DVU2282 0.85 -1.0
2,373,739 + DVU2282 0.86 -1.2
2,373,742 - DVU2282 0.86 +0.1
2,373,830 + -0.1
2,373,933 + +1.5
2,374,019 + +0.8
2,374,111 + -1.1
2,374,112 - -0.1
2,374,136 - -0.7
2,374,142 + DVU2283 0.11 +0.3
2,374,142 + DVU2283 0.11 -0.2
2,374,212 - DVU2283 0.79 -0.5
2,374,418 - DVU2284 0.25 -0.4
2,374,451 + DVU2284 0.31 -0.2
2,374,515 + DVU2284 0.44 +0.1
2,374,515 + DVU2284 0.44 -0.0
2,374,515 + DVU2284 0.44 -0.7
2,374,667 + DVU2284 0.73 +1.6
2,374,667 + DVU2284 0.73 -0.7
2,374,667 + DVU2284 0.73 +0.4
2,374,694 - DVU2284 0.79 +1.0
2,374,694 - DVU2284 0.79 -0.1
2,374,705 + DVU2284 0.81 -0.1
2,374,737 - DVU2284 0.87 -0.3
2,374,834 + -0.4

Or see this region's nucleotide sequence