Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07560

Experiment: R2A with Cesium chloride 3.90625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Cesium chloride 3.90625 mM
1,627,068	+		LRK54_RS07550	0.81	-0.2
1,627,132	+		LRK54_RS07550	0.87	-0.3
1,627,132	+		LRK54_RS07550	0.87	-2.0
1,627,133	-		LRK54_RS07550	0.87	-1.0
1,627,133	-		LRK54_RS07550	0.87	+1.5
1,627,133	-		LRK54_RS07550	0.87	+0.3
1,627,133	-		LRK54_RS07550	0.87	+0.5
1,627,133	-		LRK54_RS07550	0.87	-0.8
1,627,133	-		LRK54_RS07550	0.87	-0.8
1,627,133	-		LRK54_RS07550	0.87	-2.2
1,627,146	+		LRK54_RS07550	0.88	+0.3
1,627,146	+		LRK54_RS07550	0.88	-0.1
1,627,146	+		LRK54_RS07550	0.88	-0.1
1,627,146	+		LRK54_RS07550	0.88	-0.8
1,627,147	-		LRK54_RS07550	0.88	+0.5
1,627,147	-		LRK54_RS07550	0.88	+0.3
1,627,147	-		LRK54_RS07550	0.88	-0.1
1,627,147	-		LRK54_RS07550	0.88	+0.5
1,627,254	+				-2.2
1,627,254	+				+0.1
1,627,255	-				+1.9
1,627,436	+		LRK54_RS07555	0.23	+2.9
1,627,436	+		LRK54_RS07555	0.23	-0.5
1,627,436	+		LRK54_RS07555	0.23	-1.1
1,627,436	+		LRK54_RS07555	0.23	-0.1
1,627,436	+		LRK54_RS07555	0.23	-0.9
1,627,436	+		LRK54_RS07555	0.23	-0.7
1,627,436	+		LRK54_RS07555	0.23	+2.5
1,627,437	-		LRK54_RS07555	0.24	-1.4
1,627,437	-		LRK54_RS07555	0.24	-0.6
1,627,437	-		LRK54_RS07555	0.24	+0.3
1,627,437	-		LRK54_RS07555	0.24	+0.5
1,627,437	-		LRK54_RS07555	0.24	+1.1
1,627,437	-		LRK54_RS07555	0.24	-0.3
1,627,437	-		LRK54_RS07555	0.24	+0.3
1,627,437	-		LRK54_RS07555	0.24	+0.3
1,627,437	-		LRK54_RS07555	0.24	-0.7
1,627,437	-		LRK54_RS07555	0.24	+0.2
1,627,478	+		LRK54_RS07555	0.31	-1.4
1,627,479	-		LRK54_RS07555	0.31	-0.9
1,627,479	-		LRK54_RS07555	0.31	+0.2
1,627,496	+		LRK54_RS07555	0.35	-0.9
1,627,496	+		LRK54_RS07555	0.35	-0.9
1,627,496	+		LRK54_RS07555	0.35	-2.0
1,627,496	+		LRK54_RS07555	0.35	-0.7
1,627,496	+		LRK54_RS07555	0.35	+1.4
1,627,496	+		LRK54_RS07555	0.35	-1.4
1,627,496	+		LRK54_RS07555	0.35	-0.4
1,627,496	+		LRK54_RS07555	0.35	+1.2
1,627,497	-		LRK54_RS07555	0.35	-0.9
1,627,497	-		LRK54_RS07555	0.35	-0.4
1,627,497	-		LRK54_RS07555	0.35	+1.3
1,627,497	-		LRK54_RS07555	0.35	+0.6
1,627,497	-		LRK54_RS07555	0.35	+0.7
1,627,497	-		LRK54_RS07555	0.35	+0.0
1,627,655	+		LRK54_RS07555	0.64	-0.1
1,627,655	+		LRK54_RS07555	0.64	+0.2
1,627,655	+		LRK54_RS07555	0.64	-0.1
1,627,655	+		LRK54_RS07555	0.64	+0.8
1,627,655	+		LRK54_RS07555	0.64	+1.7
1,627,655	+		LRK54_RS07555	0.64	+0.3
1,627,655	+		LRK54_RS07555	0.64	-0.7
1,627,655	+		LRK54_RS07555	0.64	+0.8
1,627,655	+		LRK54_RS07555	0.64	+0.2
1,627,655	+		LRK54_RS07555	0.64	-0.6
1,627,655	+		LRK54_RS07555	0.64	-0.3
1,627,655	+		LRK54_RS07555	0.64	-0.8
1,627,656	-		LRK54_RS07555	0.64	-0.9
1,627,656	-		LRK54_RS07555	0.64	-2.1
1,627,656	-		LRK54_RS07555	0.64	+0.0
1,627,656	-		LRK54_RS07555	0.64	+0.2
1,627,656	-		LRK54_RS07555	0.64	+0.4
1,627,656	-		LRK54_RS07555	0.64	+1.1
1,627,656	-		LRK54_RS07555	0.64	-0.1
1,627,656	-		LRK54_RS07555	0.64	+0.3
1,627,656	-		LRK54_RS07555	0.64	+0.7
1,627,656	-		LRK54_RS07555	0.64	-0.7
1,627,656	-		LRK54_RS07555	0.64	-2.0
1,627,656	-		LRK54_RS07555	0.64	-1.8
1,627,656	-		LRK54_RS07555	0.64	+0.9
1,627,656	-		LRK54_RS07555	0.64	+1.3
1,627,656	-		LRK54_RS07555	0.64	-0.9
1,627,682	+		LRK54_RS07555	0.69	-0.2
1,627,682	+		LRK54_RS07555	0.69	-0.9
1,627,682	+		LRK54_RS07555	0.69	-0.1
1,627,682	+		LRK54_RS07555	0.69	-0.2
1,627,682	+		LRK54_RS07555	0.69	-0.5
1,627,683	-		LRK54_RS07555	0.69	-0.9
1,627,683	-		LRK54_RS07555	0.69	+0.0
1,627,683	-		LRK54_RS07555	0.69	-0.1
1,627,683	-		LRK54_RS07555	0.69	-0.7
1,627,683	-		LRK54_RS07555	0.69	+1.9
1,627,683	-		LRK54_RS07555	0.69	-2.1
1,627,683	-		LRK54_RS07555	0.69	+0.2
1,627,718	+		LRK54_RS07555	0.76	-0.1
1,627,718	+		LRK54_RS07555	0.76	+0.6
1,627,718	+		LRK54_RS07555	0.76	-1.2
1,627,718	+		LRK54_RS07555	0.76	-0.1
1,627,718	+		LRK54_RS07555	0.76	-0.2
1,627,718	+		LRK54_RS07555	0.76	-0.4
1,627,718	+		LRK54_RS07555	0.76	+0.1
1,627,719	-		LRK54_RS07555	0.76	-1.8
1,627,719	-		LRK54_RS07555	0.76	-0.3
1,627,719	-		LRK54_RS07555	0.76	-1.9
1,627,719	-		LRK54_RS07555	0.76	-0.2
1,627,719	-		LRK54_RS07555	0.76	-0.4
1,627,719	-		LRK54_RS07555	0.76	+1.2
1,627,719	-		LRK54_RS07555	0.76	-0.1
1,627,719	-		LRK54_RS07555	0.76	+0.1
1,627,719	-		LRK54_RS07555	0.76	-0.1
1,627,763	+		LRK54_RS07555	0.84	-0.7
1,627,763	+		LRK54_RS07555	0.84	-0.2
1,627,764	-		LRK54_RS07555	0.85	-0.3
1,627,764	-		LRK54_RS07555	0.85	-1.0
1,627,764	-		LRK54_RS07555	0.85	+1.4
1,627,764	-		LRK54_RS07555	0.85	-0.7
1,627,824	+				-0.7
1,627,825	-				-0.9
1,627,825	-				-0.6
1,627,938	+				+0.6
1,627,938	+				-0.4
1,627,939	-				-1.2
1,627,943	+				-0.2
1,627,943	+				+0.4
1,627,943	+				-0.4
1,627,943	+				+0.3
1,627,944	-				+0.5
1,627,944	-				-1.1
1,627,944	-				+0.1
1,627,944	-				+1.3
1,627,965	+				+1.0
1,627,965	+				+0.6
1,627,965	+				-0.9
1,627,965	+				+0.3
1,627,965	+				-0.3
1,627,966	-				+1.9
1,627,966	-				-2.2
1,627,966	-				-0.0
1,627,966	-				+0.5
1,627,966	-				+0.8
1,627,966	-				-0.3
1,627,966	-				+0.1
1,627,980	-				+0.1
1,627,996	+				-1.1
1,627,996	+				+0.2
1,628,037	+				+2.3
1,628,037	+				-0.6
1,628,059	+				-1.8
1,628,059	+				-0.3
1,628,059	+				-0.2
1,628,059	+				+0.1
1,628,059	+				+0.5
1,628,059	+				+0.3
1,628,059	+				-0.1
1,628,059	+				-1.5
1,628,059	+				-0.7
1,628,060	-				-0.7
1,628,060	-				-2.3
1,628,060	-				+0.1
1,628,060	-				-0.1
1,628,060	-				+0.8
1,628,060	-				+1.2
1,628,060	-				-1.5
1,628,074	+				+0.6
1,628,075	-				-0.1
1,628,163	+		LRK54_RS07560	0.52	+0.8
1,628,163	+		LRK54_RS07560	0.52	+0.8
1,628,163	+		LRK54_RS07560	0.52	-2.7
1,628,164	-		LRK54_RS07560	0.53	-1.2
1,628,170	+		LRK54_RS07560	0.56	+1.5
1,628,170	+		LRK54_RS07560	0.56	+1.7
1,628,170	+		LRK54_RS07560	0.56	+0.8
1,628,170	+		LRK54_RS07560	0.56	+0.3
1,628,170	+		LRK54_RS07560	0.56	+0.0
1,628,171	-		LRK54_RS07560	0.56	-0.3
1,628,171	-		LRK54_RS07560	0.56	-0.7
1,628,171	-		LRK54_RS07560	0.56	-0.1
1,628,171	-		LRK54_RS07560	0.56	+0.1
1,628,254	+				-0.2
1,628,254	+				-1.0
1,628,254	+				-0.1
1,628,254	+				+1.3
1,628,254	+				-0.4
1,628,254	+				+1.9
1,628,254	+				-0.9
1,628,254	+				-1.5
1,628,254	+				+0.9
1,628,254	+				+0.0
1,628,254	+				-0.4
1,628,254	+				-0.2
1,628,254	+				+0.7
1,628,254	+				-1.0
1,628,254	+				-1.1
1,628,254	+				+0.2
1,628,254	+				+0.9
1,628,254	+				-0.2
1,628,254	+				-1.2
1,628,255	-				-0.1
1,628,255	-				-0.1
1,628,255	-				-2.7
1,628,255	-				+0.8
1,628,255	-				-1.1
1,628,255	-				+2.7
1,628,255	-				-2.1
1,628,255	-				+0.5
1,628,255	-				+0.1
1,628,255	-				+0.1
1,628,255	-				-2.2
1,628,255	-				+0.1
1,628,275	+				+0.7
1,628,275	+				-0.1
1,628,276	-				-0.9
1,628,276	-				+0.4
1,628,276	-				-0.1
1,628,350	+				+0.3
1,628,350	+				+0.2
1,628,350	+				+0.3
1,628,350	+				-0.1
1,628,350	+				-0.8
1,628,350	+				-0.9
1,628,350	+				-1.1
1,628,351	-				-0.8
1,628,351	-				+1.3
1,628,351	-				-1.9
1,628,418	-				-0.9
1,628,429	+				+0.2
1,628,429	+				+0.5
1,628,430	-				+0.2
1,628,430	-				-1.4
1,628,521	+				+0.8
1,628,521	+				+0.2
1,628,521	+				-0.9
1,628,521	+				+0.5
1,628,521	+				-0.1
1,628,521	+				-0.3
1,628,521	+				-0.8
1,628,521	+				-0.1
1,628,521	+				-0.1
1,628,521	+				-0.5
1,628,521	+				+1.3
1,628,521	+				+0.6
1,628,521	+				-0.4
1,628,521	+				+1.6
1,628,521	+				-1.9
1,628,521	+				-0.0
1,628,521	+				-0.5
1,628,521	+				-0.2
1,628,521	+				+1.2
1,628,521	+				+0.0
1,628,521	+				+0.3
1,628,521	+				-2.1
1,628,521	+				-0.4
1,628,521	+				-0.9
1,628,522	-				-0.3
1,628,522	-				-1.1
1,628,522	-				-0.1
1,628,522	-				-1.2
1,628,522	-				+1.5
1,628,522	-				-1.7
1,628,522	-				+1.7
1,628,522	-				-0.1
1,628,522	-				+0.6
1,628,522	-				+0.5
1,628,522	-				-0.4
1,628,522	-				-0.9
1,628,522	-				-0.8
1,628,522	-				-0.3
1,628,522	-				+0.2
1,628,522	-				-1.3
1,628,559	+				-0.9
1,628,559	+				-0.2
1,628,559	+				-0.9
1,628,560	-				-0.4
1,628,560	-				-0.1
1,628,560	-				+0.2
1,628,560	-				+0.5
1,628,560	-				-2.0
1,628,578	+				+0.8
1,628,578	+				+0.9
1,628,578	+				-1.2
1,628,578	+				+0.9
1,628,578	+				+0.5
1,628,578	+				+0.8
1,628,578	+				+0.3
1,628,578	+				-1.9
1,628,578	+				-0.7
1,628,579	-				+1.1
1,628,579	-				-0.0
1,628,579	-				-0.0
1,628,696	+		LRK54_RS07565	0.18	-1.6
1,628,696	+		LRK54_RS07565	0.18	-1.1
1,628,697	-		LRK54_RS07565	0.18	+0.8
1,628,808	+		LRK54_RS07565	0.26	-0.2
1,628,808	+		LRK54_RS07565	0.26	-0.1
1,628,808	+		LRK54_RS07565	0.26	-0.6
1,628,808	+		LRK54_RS07565	0.26	+0.1
1,628,808	+		LRK54_RS07565	0.26	+0.9
1,628,808	+		LRK54_RS07565	0.26	-2.2
1,628,808	+		LRK54_RS07565	0.26	-1.2
1,628,808	+		LRK54_RS07565	0.26	+1.2
1,628,808	+		LRK54_RS07565	0.26	+0.9
1,628,808	+		LRK54_RS07565	0.26	-0.3
1,628,808	+		LRK54_RS07565	0.26	-0.4
1,628,809	-		LRK54_RS07565	0.26	+0.2
1,628,809	-		LRK54_RS07565	0.26	-1.3
1,628,809	-		LRK54_RS07565	0.26	-0.2
1,628,809	-		LRK54_RS07565	0.26	-2.2
1,628,809	-		LRK54_RS07565	0.26	-0.4
1,628,809	-		LRK54_RS07565	0.26	+0.3
1,628,809	-		LRK54_RS07565	0.26	-0.4
1,628,809	-		LRK54_RS07565	0.26	+1.2
1,628,809	-		LRK54_RS07565	0.26	-2.2
1,628,923	-		LRK54_RS07565	0.35	+0.1
1,628,940	+		LRK54_RS07565	0.36	+0.3
1,628,940	+		LRK54_RS07565	0.36	-0.2
1,628,940	+		LRK54_RS07565	0.36	-0.2
1,628,940	+		LRK54_RS07565	0.36	-1.5
1,628,940	+		LRK54_RS07565	0.36	-0.5
1,628,940	+		LRK54_RS07565	0.36	+0.9
1,628,940	+		LRK54_RS07565	0.36	+2.7
1,628,940	+		LRK54_RS07565	0.36	+0.4
1,628,940	+		LRK54_RS07565	0.36	+0.8
1,628,940	+		LRK54_RS07565	0.36	-0.1
1,628,940	+		LRK54_RS07565	0.36	-0.1
1,628,940	+		LRK54_RS07565	0.36	-0.4
1,628,940	+		LRK54_RS07565	0.36	-0.1
1,628,940	+		LRK54_RS07565	0.36	-0.4
1,628,941	-		LRK54_RS07565	0.36	+0.1
1,628,941	-		LRK54_RS07565	0.36	-0.6
1,628,941	-		LRK54_RS07565	0.36	-1.1
1,628,941	-		LRK54_RS07565	0.36	-0.4
1,628,941	-		LRK54_RS07565	0.36	-0.9
1,628,941	-		LRK54_RS07565	0.36	-1.5
1,628,941	-		LRK54_RS07565	0.36	-1.7
1,628,941	-		LRK54_RS07565	0.36	+0.6
1,628,941	-		LRK54_RS07565	0.36	-0.4
1,628,949	+		LRK54_RS07565	0.37	+0.7
1,628,949	+		LRK54_RS07565	0.37	-0.8
1,628,949	+		LRK54_RS07565	0.37	+0.4
1,628,949	+		LRK54_RS07565	0.37	-0.4
1,628,949	+		LRK54_RS07565	0.37	+0.8
1,628,949	+		LRK54_RS07565	0.37	-2.1
1,628,949	+		LRK54_RS07565	0.37	+0.7
1,628,949	+		LRK54_RS07565	0.37	-1.8
1,628,949	+		LRK54_RS07565	0.37	+0.3
1,628,949	+		LRK54_RS07565	0.37	-0.1
1,628,949	+		LRK54_RS07565	0.37	-1.7
1,628,949	+		LRK54_RS07565	0.37	+0.5
1,628,949	+		LRK54_RS07565	0.37	-1.1
1,628,949	+		LRK54_RS07565	0.37	-2.1
1,628,949	+		LRK54_RS07565	0.37	-1.0
1,628,949	+		LRK54_RS07565	0.37	+0.2
1,628,949	+		LRK54_RS07565	0.37	+0.6
1,628,949	+		LRK54_RS07565	0.37	-1.9
1,628,950	-		LRK54_RS07565	0.37	-1.2
1,628,950	-		LRK54_RS07565	0.37	+1.8
1,628,950	-		LRK54_RS07565	0.37	-0.4
1,628,950	-		LRK54_RS07565	0.37	-0.1
1,628,950	-		LRK54_RS07565	0.37	-0.1
1,628,950	-		LRK54_RS07565	0.37	+0.1
1,628,950	-		LRK54_RS07565	0.37	+0.8
1,628,950	-		LRK54_RS07565	0.37	-0.1
1,628,950	-		LRK54_RS07565	0.37	-2.0
1,628,950	-		LRK54_RS07565	0.37	-1.0
1,628,950	-		LRK54_RS07565	0.37	+0.3
1,628,950	-		LRK54_RS07565	0.37	-0.1
1,628,950	-		LRK54_RS07565	0.37	-1.7
1,628,950	-		LRK54_RS07565	0.37	-1.8
1,628,950	-		LRK54_RS07565	0.37	+0.4
1,628,950	-		LRK54_RS07565	0.37	-1.9
1,628,950	-		LRK54_RS07565	0.37	+2.1
1,628,950	-		LRK54_RS07565	0.37	-0.6
1,629,255	+		LRK54_RS07565	0.60	-0.7