Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS00955

Experiment: R2A with Cesium chloride 3.90625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS00950 and LRK54_RS00955 are separated by 84 nucleotidesLRK54_RS00955 and LRK54_RS00960 are separated by 97 nucleotides LRK54_RS00950: LRK54_RS00950 - 2-oxoglutarate dehydrogenase E1 component, at 211,003 to 213,843 _RS00950 LRK54_RS00955: LRK54_RS00955 - 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase, at 213,928 to 215,115 _RS00955 LRK54_RS00960: LRK54_RS00960 - dihydrolipoyl dehydrogenase, at 215,213 to 216,637 _RS00960 Position (kb) 213 214 215 216Strain fitness (log2 ratio) -2 -1 0 1at 213.841 kb on + strandat 213.841 kb on + strandat 213.841 kb on + strandat 213.841 kb on + strandat 213.841 kb on + strandat 213.841 kb on + strandat 215.113 kb on + strandat 215.113 kb on + strandat 215.113 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cesium chloride 3.90625 mM
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213,841 + -0.8
213,841 + -0.2
213,841 + -1.5
213,841 + +0.9
213,841 + +1.4
213,841 + +0.1
215,113 + -1.0
215,113 + -2.0
215,113 + -1.8

Or see this region's nucleotide sequence