Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02611

Experiment: PYE with Chloride 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02609 and CCNA_02610 are separated by 32 nucleotidesCCNA_02610 and CCNA_02611 are separated by 39 nucleotidesCCNA_02611 and CCNA_02612 are separated by 316 nucleotides CCNA_02609: CCNA_02609 - membrane transport protein, at 2,755,878 to 2,756,816 _02609 CCNA_02610: CCNA_02610 - glyoxalase family protein, at 2,756,849 to 2,757,226 _02610 CCNA_02611: CCNA_02611 - AraC-family transcriptional regulator, at 2,757,266 to 2,758,156 _02611 CCNA_02612: CCNA_02612 - alanyl-tRNA synthetase, at 2,758,473 to 2,761,115 _02612 Position (kb) 2757 2758 2759Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2756.313 kb on + strand, within CCNA_02609at 2756.321 kb on - strand, within CCNA_02609at 2756.363 kb on - strand, within CCNA_02609at 2756.429 kb on + strand, within CCNA_02609at 2756.437 kb on - strand, within CCNA_02609at 2756.437 kb on - strand, within CCNA_02609at 2756.474 kb on - strand, within CCNA_02609at 2756.513 kb on - strand, within CCNA_02609at 2756.516 kb on + strand, within CCNA_02609at 2756.516 kb on + strand, within CCNA_02609at 2756.554 kb on + strand, within CCNA_02609at 2756.567 kb on - strand, within CCNA_02609at 2756.573 kb on + strand, within CCNA_02609at 2756.579 kb on + strand, within CCNA_02609at 2756.580 kb on + strand, within CCNA_02609at 2756.587 kb on - strand, within CCNA_02609at 2756.590 kb on + strand, within CCNA_02609at 2756.595 kb on + strand, within CCNA_02609at 2756.598 kb on - strand, within CCNA_02609at 2756.608 kb on - strand, within CCNA_02609at 2756.617 kb on + strand, within CCNA_02609at 2756.694 kb on + strand, within CCNA_02609at 2756.694 kb on + strand, within CCNA_02609at 2756.694 kb on + strand, within CCNA_02609at 2756.702 kb on - strand, within CCNA_02609at 2756.705 kb on + strand, within CCNA_02609at 2756.713 kb on + strand, within CCNA_02609at 2756.713 kb on - strand, within CCNA_02609at 2756.721 kb on - strand, within CCNA_02609at 2756.723 kb on - strandat 2756.772 kb on - strandat 2756.802 kb on + strandat 2756.826 kb on - strandat 2756.920 kb on - strand, within CCNA_02610at 2756.964 kb on + strand, within CCNA_02610at 2756.964 kb on + strand, within CCNA_02610at 2756.993 kb on - strand, within CCNA_02610at 2756.994 kb on - strand, within CCNA_02610at 2757.001 kb on - strand, within CCNA_02610at 2757.001 kb on - strand, within CCNA_02610at 2757.014 kb on - strand, within CCNA_02610at 2757.016 kb on - strand, within CCNA_02610at 2757.032 kb on - strand, within CCNA_02610at 2757.126 kb on - strand, within CCNA_02610at 2757.126 kb on - strand, within CCNA_02610at 2757.163 kb on - strand, within CCNA_02610at 2757.170 kb on - strand, within CCNA_02610at 2757.195 kb on + strandat 2757.222 kb on - strandat 2757.233 kb on - strandat 2757.235 kb on - strandat 2757.249 kb on + strandat 2757.263 kb on + strandat 2757.265 kb on + strandat 2757.269 kb on + strandat 2757.269 kb on + strandat 2757.269 kb on + strandat 2757.273 kb on - strandat 2757.273 kb on - strandat 2757.276 kb on + strandat 2757.298 kb on - strandat 2757.354 kb on - strandat 2757.370 kb on + strand, within CCNA_02611at 2757.378 kb on - strand, within CCNA_02611at 2757.457 kb on - strand, within CCNA_02611at 2757.487 kb on + strand, within CCNA_02611at 2757.495 kb on - strand, within CCNA_02611at 2757.495 kb on - strand, within CCNA_02611at 2757.495 kb on - strand, within CCNA_02611at 2757.495 kb on - strand, within CCNA_02611at 2757.495 kb on - strand, within CCNA_02611at 2757.495 kb on - strand, within CCNA_02611at 2757.495 kb on - strand, within CCNA_02611at 2757.509 kb on - strand, within CCNA_02611at 2757.543 kb on - strand, within CCNA_02611at 2757.548 kb on - strand, within CCNA_02611at 2757.618 kb on - strand, within CCNA_02611at 2757.746 kb on + strand, within CCNA_02611at 2757.755 kb on - strand, within CCNA_02611at 2757.759 kb on + strand, within CCNA_02611at 2757.772 kb on - strand, within CCNA_02611at 2757.773 kb on - strand, within CCNA_02611at 2757.800 kb on - strand, within CCNA_02611at 2757.811 kb on + strand, within CCNA_02611at 2757.834 kb on - strand, within CCNA_02611at 2757.838 kb on + strand, within CCNA_02611at 2757.847 kb on + strand, within CCNA_02611at 2757.863 kb on + strand, within CCNA_02611at 2757.881 kb on + strand, within CCNA_02611at 2757.913 kb on - strand, within CCNA_02611at 2758.000 kb on + strand, within CCNA_02611at 2758.105 kb on - strandat 2758.115 kb on - strandat 2758.173 kb on + strandat 2758.173 kb on + strandat 2758.175 kb on + strandat 2758.181 kb on - strandat 2758.181 kb on - strandat 2758.215 kb on + strandat 2758.338 kb on - strandat 2758.341 kb on + strandat 2758.342 kb on + strandat 2758.342 kb on + strandat 2758.349 kb on - strandat 2758.350 kb on - strandat 2758.352 kb on + strandat 2758.367 kb on - strandat 2758.472 kb on - strandat 2758.489 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Chloride 100 mM
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2,756,313 + CCNA_02609 0.46 +0.8
2,756,321 - CCNA_02609 0.47 +1.1
2,756,363 - CCNA_02609 0.52 -0.3
2,756,429 + CCNA_02609 0.59 +0.7
2,756,437 - CCNA_02609 0.60 -1.3
2,756,437 - CCNA_02609 0.60 +0.8
2,756,474 - CCNA_02609 0.63 -0.4
2,756,513 - CCNA_02609 0.68 +0.1
2,756,516 + CCNA_02609 0.68 -0.2
2,756,516 + CCNA_02609 0.68 -0.3
2,756,554 + CCNA_02609 0.72 +1.4
2,756,567 - CCNA_02609 0.73 -0.3
2,756,573 + CCNA_02609 0.74 +0.1
2,756,579 + CCNA_02609 0.75 +0.2
2,756,580 + CCNA_02609 0.75 +0.8
2,756,587 - CCNA_02609 0.76 +0.8
2,756,590 + CCNA_02609 0.76 +0.3
2,756,595 + CCNA_02609 0.76 -1.5
2,756,598 - CCNA_02609 0.77 +1.2
2,756,608 - CCNA_02609 0.78 +0.7
2,756,617 + CCNA_02609 0.79 -2.0
2,756,694 + CCNA_02609 0.87 +0.8
2,756,694 + CCNA_02609 0.87 -0.2
2,756,694 + CCNA_02609 0.87 +0.2
2,756,702 - CCNA_02609 0.88 -1.2
2,756,705 + CCNA_02609 0.88 -0.4
2,756,713 + CCNA_02609 0.89 -0.8
2,756,713 - CCNA_02609 0.89 -0.0
2,756,721 - CCNA_02609 0.90 +0.7
2,756,723 - -0.8
2,756,772 - +1.4
2,756,802 + +0.1
2,756,826 - -0.9
2,756,920 - CCNA_02610 0.19 +2.4
2,756,964 + CCNA_02610 0.30 -0.8
2,756,964 + CCNA_02610 0.30 -1.7
2,756,993 - CCNA_02610 0.38 -0.8
2,756,994 - CCNA_02610 0.38 +1.1
2,757,001 - CCNA_02610 0.40 -0.9
2,757,001 - CCNA_02610 0.40 +0.4
2,757,014 - CCNA_02610 0.44 -0.2
2,757,016 - CCNA_02610 0.44 -0.8
2,757,032 - CCNA_02610 0.48 -0.8
2,757,126 - CCNA_02610 0.73 +0.1
2,757,126 - CCNA_02610 0.73 -1.4
2,757,163 - CCNA_02610 0.83 +0.6
2,757,170 - CCNA_02610 0.85 -0.1
2,757,195 + -1.8
2,757,222 - +0.1
2,757,233 - -0.3
2,757,235 - -2.1
2,757,249 + +1.8
2,757,263 + -1.2
2,757,265 + +0.4
2,757,269 + +0.4
2,757,269 + +0.1
2,757,269 + -1.4
2,757,273 - +2.4
2,757,273 - +0.6
2,757,276 + -0.2
2,757,298 - -0.5
2,757,354 - +0.7
2,757,370 + CCNA_02611 0.12 -1.9
2,757,378 - CCNA_02611 0.13 +0.0
2,757,457 - CCNA_02611 0.21 +0.1
2,757,487 + CCNA_02611 0.25 -1.8
2,757,495 - CCNA_02611 0.26 +0.1
2,757,495 - CCNA_02611 0.26 -1.3
2,757,495 - CCNA_02611 0.26 -0.5
2,757,495 - CCNA_02611 0.26 -0.4
2,757,495 - CCNA_02611 0.26 +0.8
2,757,495 - CCNA_02611 0.26 -0.5
2,757,495 - CCNA_02611 0.26 +0.6
2,757,509 - CCNA_02611 0.27 -0.3
2,757,543 - CCNA_02611 0.31 +0.4
2,757,548 - CCNA_02611 0.32 +0.0
2,757,618 - CCNA_02611 0.40 -1.1
2,757,746 + CCNA_02611 0.54 +2.4
2,757,755 - CCNA_02611 0.55 +0.4
2,757,759 + CCNA_02611 0.55 +1.1
2,757,772 - CCNA_02611 0.57 +1.6
2,757,773 - CCNA_02611 0.57 +0.4
2,757,800 - CCNA_02611 0.60 +1.4
2,757,811 + CCNA_02611 0.61 -0.2
2,757,834 - CCNA_02611 0.64 +2.4
2,757,838 + CCNA_02611 0.64 +0.8
2,757,847 + CCNA_02611 0.65 +0.8
2,757,863 + CCNA_02611 0.67 -0.3
2,757,881 + CCNA_02611 0.69 +0.8
2,757,913 - CCNA_02611 0.73 +1.4
2,758,000 + CCNA_02611 0.82 +0.8
2,758,105 - +0.2
2,758,115 - -0.3
2,758,173 + +0.6
2,758,173 + +0.1
2,758,175 + +0.8
2,758,181 - +0.7
2,758,181 - +2.2
2,758,215 + +0.1
2,758,338 - +0.8
2,758,341 + +3.4
2,758,342 + +1.2
2,758,342 + +0.1
2,758,349 - +0.6
2,758,350 - +1.4
2,758,352 + -0.3
2,758,367 - +0.2
2,758,472 - +2.1
2,758,489 + +0.4

Or see this region's nucleotide sequence