Experiment: PYE with Chloride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02609 and CCNA_02610 are separated by 32 nucleotides CCNA_02610 and CCNA_02611 are separated by 39 nucleotides CCNA_02611 and CCNA_02612 are separated by 316 nucleotides
CCNA_02609: CCNA_02609 - membrane transport protein, at 2,755,878 to 2,756,816
_02609
CCNA_02610: CCNA_02610 - glyoxalase family protein, at 2,756,849 to 2,757,226
_02610
CCNA_02611: CCNA_02611 - AraC-family transcriptional regulator, at 2,757,266 to 2,758,156
_02611
CCNA_02612: CCNA_02612 - alanyl-tRNA synthetase, at 2,758,473 to 2,761,115
_02612
Position (kb)
2757
2758
2759 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2756.313 kb on + strand, within CCNA_02609 at 2756.321 kb on - strand, within CCNA_02609 at 2756.363 kb on - strand, within CCNA_02609 at 2756.429 kb on + strand, within CCNA_02609 at 2756.437 kb on - strand, within CCNA_02609 at 2756.437 kb on - strand, within CCNA_02609 at 2756.474 kb on - strand, within CCNA_02609 at 2756.513 kb on - strand, within CCNA_02609 at 2756.516 kb on + strand, within CCNA_02609 at 2756.516 kb on + strand, within CCNA_02609 at 2756.554 kb on + strand, within CCNA_02609 at 2756.567 kb on - strand, within CCNA_02609 at 2756.573 kb on + strand, within CCNA_02609 at 2756.579 kb on + strand, within CCNA_02609 at 2756.580 kb on + strand, within CCNA_02609 at 2756.587 kb on - strand, within CCNA_02609 at 2756.590 kb on + strand, within CCNA_02609 at 2756.595 kb on + strand, within CCNA_02609 at 2756.598 kb on - strand, within CCNA_02609 at 2756.608 kb on - strand, within CCNA_02609 at 2756.617 kb on + strand, within CCNA_02609 at 2756.694 kb on + strand, within CCNA_02609 at 2756.694 kb on + strand, within CCNA_02609 at 2756.694 kb on + strand, within CCNA_02609 at 2756.702 kb on - strand, within CCNA_02609 at 2756.705 kb on + strand, within CCNA_02609 at 2756.713 kb on + strand, within CCNA_02609 at 2756.713 kb on - strand, within CCNA_02609 at 2756.721 kb on - strand, within CCNA_02609 at 2756.723 kb on - strand at 2756.772 kb on - strand at 2756.802 kb on + strand at 2756.826 kb on - strand at 2756.920 kb on - strand, within CCNA_02610 at 2756.964 kb on + strand, within CCNA_02610 at 2756.964 kb on + strand, within CCNA_02610 at 2756.993 kb on - strand, within CCNA_02610 at 2756.994 kb on - strand, within CCNA_02610 at 2757.001 kb on - strand, within CCNA_02610 at 2757.001 kb on - strand, within CCNA_02610 at 2757.014 kb on - strand, within CCNA_02610 at 2757.016 kb on - strand, within CCNA_02610 at 2757.032 kb on - strand, within CCNA_02610 at 2757.126 kb on - strand, within CCNA_02610 at 2757.126 kb on - strand, within CCNA_02610 at 2757.163 kb on - strand, within CCNA_02610 at 2757.170 kb on - strand, within CCNA_02610 at 2757.195 kb on + strand at 2757.222 kb on - strand at 2757.233 kb on - strand at 2757.235 kb on - strand at 2757.249 kb on + strand at 2757.263 kb on + strand at 2757.265 kb on + strand at 2757.269 kb on + strand at 2757.269 kb on + strand at 2757.269 kb on + strand at 2757.273 kb on - strand at 2757.273 kb on - strand at 2757.276 kb on + strand at 2757.298 kb on - strand at 2757.354 kb on - strand at 2757.370 kb on + strand, within CCNA_02611 at 2757.378 kb on - strand, within CCNA_02611 at 2757.457 kb on - strand, within CCNA_02611 at 2757.487 kb on + strand, within CCNA_02611 at 2757.495 kb on - strand, within CCNA_02611 at 2757.495 kb on - strand, within CCNA_02611 at 2757.495 kb on - strand, within CCNA_02611 at 2757.495 kb on - strand, within CCNA_02611 at 2757.495 kb on - strand, within CCNA_02611 at 2757.495 kb on - strand, within CCNA_02611 at 2757.495 kb on - strand, within CCNA_02611 at 2757.509 kb on - strand, within CCNA_02611 at 2757.543 kb on - strand, within CCNA_02611 at 2757.548 kb on - strand, within CCNA_02611 at 2757.618 kb on - strand, within CCNA_02611 at 2757.746 kb on + strand, within CCNA_02611 at 2757.755 kb on - strand, within CCNA_02611 at 2757.759 kb on + strand, within CCNA_02611 at 2757.772 kb on - strand, within CCNA_02611 at 2757.773 kb on - strand, within CCNA_02611 at 2757.800 kb on - strand, within CCNA_02611 at 2757.811 kb on + strand, within CCNA_02611 at 2757.834 kb on - strand, within CCNA_02611 at 2757.838 kb on + strand, within CCNA_02611 at 2757.847 kb on + strand, within CCNA_02611 at 2757.863 kb on + strand, within CCNA_02611 at 2757.881 kb on + strand, within CCNA_02611 at 2757.913 kb on - strand, within CCNA_02611 at 2758.000 kb on + strand, within CCNA_02611 at 2758.105 kb on - strand at 2758.115 kb on - strand at 2758.173 kb on + strand at 2758.173 kb on + strand at 2758.175 kb on + strand at 2758.181 kb on - strand at 2758.181 kb on - strand at 2758.215 kb on + strand at 2758.338 kb on - strand at 2758.341 kb on + strand at 2758.342 kb on + strand at 2758.342 kb on + strand at 2758.349 kb on - strand at 2758.350 kb on - strand at 2758.352 kb on + strand at 2758.367 kb on - strand at 2758.472 kb on - strand at 2758.489 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Chloride 100 mM remove 2,756,313 + CCNA_02609 0.46 +0.8 2,756,321 - CCNA_02609 0.47 +1.1 2,756,363 - CCNA_02609 0.52 -0.3 2,756,429 + CCNA_02609 0.59 +0.7 2,756,437 - CCNA_02609 0.60 -1.3 2,756,437 - CCNA_02609 0.60 +0.8 2,756,474 - CCNA_02609 0.63 -0.4 2,756,513 - CCNA_02609 0.68 +0.1 2,756,516 + CCNA_02609 0.68 -0.2 2,756,516 + CCNA_02609 0.68 -0.3 2,756,554 + CCNA_02609 0.72 +1.4 2,756,567 - CCNA_02609 0.73 -0.3 2,756,573 + CCNA_02609 0.74 +0.1 2,756,579 + CCNA_02609 0.75 +0.2 2,756,580 + CCNA_02609 0.75 +0.8 2,756,587 - CCNA_02609 0.76 +0.8 2,756,590 + CCNA_02609 0.76 +0.3 2,756,595 + CCNA_02609 0.76 -1.5 2,756,598 - CCNA_02609 0.77 +1.2 2,756,608 - CCNA_02609 0.78 +0.7 2,756,617 + CCNA_02609 0.79 -2.0 2,756,694 + CCNA_02609 0.87 +0.8 2,756,694 + CCNA_02609 0.87 -0.2 2,756,694 + CCNA_02609 0.87 +0.2 2,756,702 - CCNA_02609 0.88 -1.2 2,756,705 + CCNA_02609 0.88 -0.4 2,756,713 + CCNA_02609 0.89 -0.8 2,756,713 - CCNA_02609 0.89 -0.0 2,756,721 - CCNA_02609 0.90 +0.7 2,756,723 - -0.8 2,756,772 - +1.4 2,756,802 + +0.1 2,756,826 - -0.9 2,756,920 - CCNA_02610 0.19 +2.4 2,756,964 + CCNA_02610 0.30 -0.8 2,756,964 + CCNA_02610 0.30 -1.7 2,756,993 - CCNA_02610 0.38 -0.8 2,756,994 - CCNA_02610 0.38 +1.1 2,757,001 - CCNA_02610 0.40 -0.9 2,757,001 - CCNA_02610 0.40 +0.4 2,757,014 - CCNA_02610 0.44 -0.2 2,757,016 - CCNA_02610 0.44 -0.8 2,757,032 - CCNA_02610 0.48 -0.8 2,757,126 - CCNA_02610 0.73 +0.1 2,757,126 - CCNA_02610 0.73 -1.4 2,757,163 - CCNA_02610 0.83 +0.6 2,757,170 - CCNA_02610 0.85 -0.1 2,757,195 + -1.8 2,757,222 - +0.1 2,757,233 - -0.3 2,757,235 - -2.1 2,757,249 + +1.8 2,757,263 + -1.2 2,757,265 + +0.4 2,757,269 + +0.4 2,757,269 + +0.1 2,757,269 + -1.4 2,757,273 - +2.4 2,757,273 - +0.6 2,757,276 + -0.2 2,757,298 - -0.5 2,757,354 - +0.7 2,757,370 + CCNA_02611 0.12 -1.9 2,757,378 - CCNA_02611 0.13 +0.0 2,757,457 - CCNA_02611 0.21 +0.1 2,757,487 + CCNA_02611 0.25 -1.8 2,757,495 - CCNA_02611 0.26 +0.1 2,757,495 - CCNA_02611 0.26 -1.3 2,757,495 - CCNA_02611 0.26 -0.5 2,757,495 - CCNA_02611 0.26 -0.4 2,757,495 - CCNA_02611 0.26 +0.8 2,757,495 - CCNA_02611 0.26 -0.5 2,757,495 - CCNA_02611 0.26 +0.6 2,757,509 - CCNA_02611 0.27 -0.3 2,757,543 - CCNA_02611 0.31 +0.4 2,757,548 - CCNA_02611 0.32 +0.0 2,757,618 - CCNA_02611 0.40 -1.1 2,757,746 + CCNA_02611 0.54 +2.4 2,757,755 - CCNA_02611 0.55 +0.4 2,757,759 + CCNA_02611 0.55 +1.1 2,757,772 - CCNA_02611 0.57 +1.6 2,757,773 - CCNA_02611 0.57 +0.4 2,757,800 - CCNA_02611 0.60 +1.4 2,757,811 + CCNA_02611 0.61 -0.2 2,757,834 - CCNA_02611 0.64 +2.4 2,757,838 + CCNA_02611 0.64 +0.8 2,757,847 + CCNA_02611 0.65 +0.8 2,757,863 + CCNA_02611 0.67 -0.3 2,757,881 + CCNA_02611 0.69 +0.8 2,757,913 - CCNA_02611 0.73 +1.4 2,758,000 + CCNA_02611 0.82 +0.8 2,758,105 - +0.2 2,758,115 - -0.3 2,758,173 + +0.6 2,758,173 + +0.1 2,758,175 + +0.8 2,758,181 - +0.7 2,758,181 - +2.2 2,758,215 + +0.1 2,758,338 - +0.8 2,758,341 + +3.4 2,758,342 + +1.2 2,758,342 + +0.1 2,758,349 - +0.6 2,758,350 - +1.4 2,758,352 + -0.3 2,758,367 - +0.2 2,758,472 - +2.1 2,758,489 + +0.4
Or see this region's nucleotide sequence