Experiment: PYE with Chloride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00698 and CCNA_00699 are separated by 265 nucleotides CCNA_00699 and CCNA_00700 are separated by 718 nucleotides
CCNA_00698: CCNA_00698 - hypothetical protein, at 757,318 to 757,815
_00698
CCNA_00699: CCNA_00699 - LSU ribosomal protein L28P, at 758,081 to 758,380
_00699
CCNA_00700: CCNA_00700 - TonB-dependent receptor, at 759,099 to 761,024
_00700
Position (kb) 758
759 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 757.091 kb on + strand at 757.092 kb on - strand at 757.148 kb on - strand at 757.376 kb on + strand, within CCNA_00698 at 757.376 kb on + strand, within CCNA_00698 at 757.376 kb on + strand, within CCNA_00698 at 757.376 kb on + strand, within CCNA_00698 at 757.384 kb on - strand, within CCNA_00698 at 757.403 kb on + strand, within CCNA_00698 at 757.437 kb on - strand, within CCNA_00698 at 757.442 kb on + strand, within CCNA_00698 at 757.449 kb on + strand, within CCNA_00698 at 757.467 kb on - strand, within CCNA_00698 at 757.467 kb on - strand, within CCNA_00698 at 757.476 kb on + strand, within CCNA_00698 at 757.515 kb on - strand, within CCNA_00698 at 757.516 kb on + strand, within CCNA_00698 at 757.524 kb on - strand, within CCNA_00698 at 757.527 kb on + strand, within CCNA_00698 at 757.552 kb on - strand, within CCNA_00698 at 757.566 kb on - strand, within CCNA_00698 at 757.571 kb on + strand, within CCNA_00698 at 757.571 kb on + strand, within CCNA_00698 at 757.579 kb on - strand, within CCNA_00698 at 757.587 kb on - strand, within CCNA_00698 at 757.596 kb on + strand, within CCNA_00698 at 757.596 kb on + strand, within CCNA_00698 at 757.626 kb on + strand, within CCNA_00698 at 757.645 kb on + strand, within CCNA_00698 at 757.653 kb on - strand at 757.663 kb on + strand, within CCNA_00698 at 757.724 kb on + strand, within CCNA_00698 at 757.732 kb on - strand, within CCNA_00698 at 757.736 kb on + strand, within CCNA_00698 at 757.746 kb on + strand, within CCNA_00698 at 757.754 kb on - strand at 757.780 kb on + strand at 757.780 kb on + strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.826 kb on + strand at 757.830 kb on - strand at 757.838 kb on + strand at 757.838 kb on + strand at 757.838 kb on + strand at 757.838 kb on + strand at 757.838 kb on + strand at 757.838 kb on + strand at 757.846 kb on - strand at 757.846 kb on - strand at 757.846 kb on - strand at 757.866 kb on + strand at 757.875 kb on - strand at 757.885 kb on - strand at 757.889 kb on - strand at 757.923 kb on + strand at 757.932 kb on - strand at 757.932 kb on - strand at 757.937 kb on - strand at 757.939 kb on + strand at 757.947 kb on - strand at 758.341 kb on + strand, within CCNA_00699 at 758.341 kb on + strand, within CCNA_00699 at 758.353 kb on + strand at 758.353 kb on + strand at 758.375 kb on + strand at 758.525 kb on + strand at 758.541 kb on - strand at 758.541 kb on - strand at 758.567 kb on - strand at 758.601 kb on - strand at 759.060 kb on + strand at 759.067 kb on + strand at 759.067 kb on + strand at 759.067 kb on + strand at 759.085 kb on - strand at 759.085 kb on - strand at 759.112 kb on + strand at 759.147 kb on + strand at 759.202 kb on - strand at 759.203 kb on + strand at 759.236 kb on + strand at 759.249 kb on + strand at 759.289 kb on - strand at 759.291 kb on - strand at 759.292 kb on + strand, within CCNA_00700 at 759.300 kb on - strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.344 kb on + strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Chloride 100 mM remove 757,091 + -1.9 757,092 - +0.9 757,148 - +0.5 757,376 + CCNA_00698 0.12 -1.2 757,376 + CCNA_00698 0.12 -1.4 757,376 + CCNA_00698 0.12 -1.3 757,376 + CCNA_00698 0.12 +0.5 757,384 - CCNA_00698 0.13 -1.6 757,403 + CCNA_00698 0.17 -2.0 757,437 - CCNA_00698 0.24 +0.5 757,442 + CCNA_00698 0.25 -0.9 757,449 + CCNA_00698 0.26 -0.8 757,467 - CCNA_00698 0.30 -0.3 757,467 - CCNA_00698 0.30 -0.9 757,476 + CCNA_00698 0.32 +0.9 757,515 - CCNA_00698 0.40 -2.4 757,516 + CCNA_00698 0.40 -1.4 757,524 - CCNA_00698 0.41 -0.7 757,527 + CCNA_00698 0.42 -0.5 757,552 - CCNA_00698 0.47 -2.1 757,566 - CCNA_00698 0.50 -0.9 757,571 + CCNA_00698 0.51 +1.9 757,571 + CCNA_00698 0.51 -3.1 757,579 - CCNA_00698 0.52 +1.5 757,587 - CCNA_00698 0.54 -0.5 757,596 + CCNA_00698 0.56 +0.9 757,596 + CCNA_00698 0.56 -1.3 757,626 + CCNA_00698 0.62 +2.5 757,645 + CCNA_00698 0.66 +0.2 757,653 - +2.5 757,663 + CCNA_00698 0.69 -1.6 757,724 + CCNA_00698 0.82 -1.2 757,732 - CCNA_00698 0.83 +0.9 757,736 + CCNA_00698 0.84 +2.5 757,746 + CCNA_00698 0.86 +0.9 757,754 - +0.9 757,780 + -0.7 757,780 + +0.2 757,788 - +1.5 757,788 - +0.8 757,788 - -0.8 757,788 - +0.2 757,788 - -1.4 757,788 - -1.7 757,788 - -0.7 757,788 - -0.1 757,788 - +2.5 757,826 + -0.3 757,830 - -0.8 757,838 + -0.5 757,838 + -0.1 757,838 + +0.5 757,838 + -1.3 757,838 + -1.9 757,838 + +1.5 757,846 - +3.1 757,846 - -0.1 757,846 - +0.9 757,866 + -1.5 757,875 - -0.7 757,885 - +0.1 757,889 - +0.3 757,923 + -0.1 757,932 - +0.7 757,932 - +1.3 757,937 - -1.1 757,939 + +2.9 757,947 - +1.8 758,341 + CCNA_00699 0.87 +4.4 758,341 + CCNA_00699 0.87 +4.3 758,353 + +8.6 758,353 + +3.5 758,375 + +4.6 758,525 + +1.3 758,541 - +0.2 758,541 - +3.5 758,567 - +2.5 758,601 - +0.2 759,060 + +2.5 759,067 + +0.4 759,067 + +1.8 759,067 + +1.0 759,085 - -0.7 759,085 - -0.5 759,112 + +1.5 759,147 + +2.8 759,202 - -0.1 759,203 + -1.7 759,236 + +1.0 759,249 + +1.2 759,289 - -0.7 759,291 - +0.3 759,292 + CCNA_00700 0.10 +0.3 759,300 - CCNA_00700 0.10 +2.7 759,339 + CCNA_00700 0.12 -0.2 759,339 + CCNA_00700 0.12 +1.1 759,339 + CCNA_00700 0.12 -1.3 759,339 + CCNA_00700 0.12 +1.0 759,339 + CCNA_00700 0.12 +1.3 759,339 + CCNA_00700 0.12 +0.9 759,339 + CCNA_00700 0.12 +1.7 759,339 + CCNA_00700 0.12 -2.2 759,339 + CCNA_00700 0.12 +1.1 759,339 + CCNA_00700 0.12 -1.1 759,339 + CCNA_00700 0.12 -3.0 759,339 + CCNA_00700 0.12 +0.7 759,339 + CCNA_00700 0.12 -0.4 759,339 + CCNA_00700 0.12 +1.5 759,339 + CCNA_00700 0.12 -0.5 759,339 + CCNA_00700 0.12 +0.6 759,344 + CCNA_00700 0.13 +1.3 759,347 - CCNA_00700 0.13 -0.8 759,347 - CCNA_00700 0.13 +7.5 759,347 - CCNA_00700 0.13 +1.1 759,347 - CCNA_00700 0.13 -1.5 759,347 - CCNA_00700 0.13 +0.6 759,347 - CCNA_00700 0.13 -1.1 759,347 - CCNA_00700 0.13 -1.1
Or see this region's nucleotide sequence