Experiment: PYE with Chloride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03886 and CCNA_00582 are separated by 134 nucleotides CCNA_00582 and CCNA_00583 are separated by 80 nucleotides
CCNA_03886: CCNA_03886 - trypsin-like peptidase domain family protein, at 609,287 to 611,065
_03886
CCNA_00582: CCNA_00582 - hypothetical protein, at 611,200 to 611,757
_00582
CCNA_00583: CCNA_00583 - lysozyme family protein, at 611,838 to 613,205
_00583
Position (kb) 611
612 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 610.229 kb on + strand, within CCNA_03886 at 610.276 kb on + strand, within CCNA_03886 at 610.321 kb on + strand, within CCNA_03886 at 610.327 kb on - strand, within CCNA_03886 at 610.362 kb on + strand, within CCNA_03886 at 610.364 kb on - strand, within CCNA_03886 at 610.412 kb on + strand, within CCNA_03886 at 610.415 kb on - strand, within CCNA_03886 at 610.415 kb on - strand, within CCNA_03886 at 610.420 kb on - strand, within CCNA_03886 at 610.476 kb on + strand, within CCNA_03886 at 610.492 kb on + strand, within CCNA_03886 at 610.552 kb on - strand, within CCNA_03886 at 610.554 kb on - strand, within CCNA_03886 at 610.592 kb on + strand, within CCNA_03886 at 610.594 kb on + strand, within CCNA_03886 at 610.639 kb on + strand, within CCNA_03886 at 610.683 kb on + strand, within CCNA_03886 at 610.705 kb on - strand at 610.711 kb on + strand at 610.719 kb on + strand, within CCNA_03886 at 610.864 kb on + strand, within CCNA_03886 at 610.871 kb on - strand, within CCNA_03886 at 610.872 kb on - strand at 610.879 kb on - strand, within CCNA_03886 at 610.882 kb on + strand, within CCNA_03886 at 610.905 kb on + strand at 610.909 kb on + strand at 610.913 kb on - strand at 610.913 kb on - strand at 610.928 kb on + strand at 610.934 kb on + strand at 610.937 kb on - strand at 610.966 kb on - strand at 611.051 kb on - strand at 611.063 kb on - strand at 611.144 kb on + strand at 611.152 kb on - strand at 611.152 kb on - strand at 611.214 kb on + strand at 611.214 kb on + strand at 611.214 kb on + strand at 611.226 kb on + strand at 611.229 kb on + strand at 611.244 kb on + strand at 611.248 kb on - strand at 611.284 kb on + strand, within CCNA_00582 at 611.284 kb on + strand, within CCNA_00582 at 611.292 kb on - strand, within CCNA_00582 at 611.292 kb on - strand, within CCNA_00582 at 611.307 kb on - strand, within CCNA_00582 at 611.324 kb on - strand, within CCNA_00582 at 611.326 kb on + strand, within CCNA_00582 at 611.326 kb on + strand, within CCNA_00582 at 611.333 kb on + strand, within CCNA_00582 at 611.422 kb on + strand, within CCNA_00582 at 611.440 kb on - strand, within CCNA_00582 at 611.457 kb on + strand, within CCNA_00582 at 611.457 kb on + strand, within CCNA_00582 at 611.465 kb on - strand, within CCNA_00582 at 611.470 kb on + strand, within CCNA_00582 at 611.471 kb on - strand, within CCNA_00582 at 611.478 kb on - strand, within CCNA_00582 at 611.478 kb on - strand, within CCNA_00582 at 611.483 kb on + strand, within CCNA_00582 at 611.483 kb on + strand, within CCNA_00582 at 611.483 kb on + strand, within CCNA_00582 at 611.501 kb on + strand, within CCNA_00582 at 611.501 kb on + strand, within CCNA_00582 at 611.501 kb on + strand, within CCNA_00582 at 611.509 kb on - strand, within CCNA_00582 at 611.509 kb on - strand, within CCNA_00582 at 611.581 kb on + strand, within CCNA_00582 at 611.586 kb on + strand, within CCNA_00582 at 611.586 kb on + strand, within CCNA_00582 at 611.589 kb on - strand, within CCNA_00582 at 611.589 kb on - strand, within CCNA_00582 at 611.589 kb on - strand, within CCNA_00582 at 611.698 kb on + strand, within CCNA_00582 at 611.706 kb on - strand at 611.717 kb on - strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.798 kb on + strand at 611.806 kb on - strand at 611.812 kb on + strand at 611.820 kb on - strand at 611.820 kb on - strand at 611.820 kb on - strand at 611.830 kb on + strand at 611.889 kb on - strand at 611.896 kb on - strand at 611.903 kb on + strand at 611.973 kb on + strand at 611.973 kb on + strand at 612.027 kb on - strand, within CCNA_00583 at 612.042 kb on - strand, within CCNA_00583 at 612.047 kb on - strand, within CCNA_00583 at 612.057 kb on + strand, within CCNA_00583 at 612.057 kb on + strand, within CCNA_00583 at 612.065 kb on - strand, within CCNA_00583 at 612.078 kb on - strand, within CCNA_00583 at 612.088 kb on - strand, within CCNA_00583 at 612.090 kb on + strand, within CCNA_00583 at 612.092 kb on + strand, within CCNA_00583 at 612.098 kb on - strand, within CCNA_00583 at 612.098 kb on - strand, within CCNA_00583 at 612.113 kb on + strand, within CCNA_00583 at 612.113 kb on + strand, within CCNA_00583 at 612.134 kb on + strand, within CCNA_00583 at 612.136 kb on - strand, within CCNA_00583 at 612.147 kb on - strand, within CCNA_00583 at 612.195 kb on + strand, within CCNA_00583 at 612.203 kb on - strand, within CCNA_00583 at 612.212 kb on + strand, within CCNA_00583 at 612.222 kb on + strand, within CCNA_00583 at 612.343 kb on + strand, within CCNA_00583 at 612.364 kb on + strand, within CCNA_00583 at 612.371 kb on - strand, within CCNA_00583 at 612.372 kb on - strand, within CCNA_00583 at 612.372 kb on - strand, within CCNA_00583 at 612.372 kb on - strand, within CCNA_00583 at 612.372 kb on - strand, within CCNA_00583 at 612.404 kb on - strand, within CCNA_00583 at 612.411 kb on + strand, within CCNA_00583 at 612.419 kb on - strand, within CCNA_00583 at 612.420 kb on - strand, within CCNA_00583 at 612.433 kb on + strand, within CCNA_00583 at 612.433 kb on + strand, within CCNA_00583 at 612.456 kb on + strand, within CCNA_00583 at 612.456 kb on + strand, within CCNA_00583 at 612.461 kb on + strand, within CCNA_00583 at 612.464 kb on - strand, within CCNA_00583 at 612.464 kb on - strand, within CCNA_00583 at 612.469 kb on - strand, within CCNA_00583 at 612.484 kb on + strand, within CCNA_00583 at 612.484 kb on + strand, within CCNA_00583 at 612.569 kb on + strand, within CCNA_00583 at 612.569 kb on + strand, within CCNA_00583 at 612.595 kb on + strand, within CCNA_00583 at 612.618 kb on + strand, within CCNA_00583 at 612.621 kb on - strand, within CCNA_00583 at 612.621 kb on - strand, within CCNA_00583 at 612.621 kb on - strand at 612.621 kb on - strand, within CCNA_00583 at 612.626 kb on - strand, within CCNA_00583 at 612.626 kb on - strand, within CCNA_00583 at 612.657 kb on - strand, within CCNA_00583 at 612.677 kb on - strand, within CCNA_00583 at 612.724 kb on - strand, within CCNA_00583 at 612.756 kb on + strand, within CCNA_00583
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Chloride 100 mM remove 610,229 + CCNA_03886 0.53 +0.1 610,276 + CCNA_03886 0.56 -1.3 610,321 + CCNA_03886 0.58 +0.9 610,327 - CCNA_03886 0.58 +0.9 610,362 + CCNA_03886 0.60 +0.7 610,364 - CCNA_03886 0.61 +2.5 610,412 + CCNA_03886 0.63 +0.4 610,415 - CCNA_03886 0.63 -0.3 610,415 - CCNA_03886 0.63 +0.1 610,420 - CCNA_03886 0.64 -0.5 610,476 + CCNA_03886 0.67 -1.3 610,492 + CCNA_03886 0.68 -1.1 610,552 - CCNA_03886 0.71 -0.8 610,554 - CCNA_03886 0.71 +0.5 610,592 + CCNA_03886 0.73 +0.6 610,594 + CCNA_03886 0.73 +0.9 610,639 + CCNA_03886 0.76 -0.7 610,683 + CCNA_03886 0.78 -0.5 610,705 - +1.5 610,711 + +1.5 610,719 + CCNA_03886 0.80 +1.1 610,864 + CCNA_03886 0.89 -1.3 610,871 - CCNA_03886 0.89 -0.5 610,872 - +1.5 610,879 - CCNA_03886 0.89 +0.2 610,882 + CCNA_03886 0.90 -0.6 610,905 + +0.2 610,909 + +1.5 610,913 - +0.7 610,913 - +0.6 610,928 + -0.5 610,934 + +1.9 610,937 - -1.2 610,966 - -0.3 611,051 - +0.5 611,063 - +0.9 611,144 + +0.3 611,152 - +0.2 611,152 - +2.5 611,214 + +0.7 611,214 + +1.7 611,214 + -1.1 611,226 + -0.0 611,229 + -0.2 611,244 + -1.4 611,248 - +0.5 611,284 + CCNA_00582 0.15 -0.4 611,284 + CCNA_00582 0.15 -0.8 611,292 - CCNA_00582 0.16 -1.2 611,292 - CCNA_00582 0.16 -0.8 611,307 - CCNA_00582 0.19 +1.5 611,324 - CCNA_00582 0.22 +1.7 611,326 + CCNA_00582 0.23 +0.9 611,326 + CCNA_00582 0.23 -1.6 611,333 + CCNA_00582 0.24 -1.8 611,422 + CCNA_00582 0.40 -0.9 611,440 - CCNA_00582 0.43 -0.7 611,457 + CCNA_00582 0.46 -1.2 611,457 + CCNA_00582 0.46 -0.3 611,465 - CCNA_00582 0.47 +2.5 611,470 + CCNA_00582 0.48 -0.5 611,471 - CCNA_00582 0.49 +0.9 611,478 - CCNA_00582 0.50 -0.7 611,478 - CCNA_00582 0.50 -1.4 611,483 + CCNA_00582 0.51 -0.5 611,483 + CCNA_00582 0.51 -0.4 611,483 + CCNA_00582 0.51 +0.5 611,501 + CCNA_00582 0.54 -1.0 611,501 + CCNA_00582 0.54 -1.6 611,501 + CCNA_00582 0.54 +1.2 611,509 - CCNA_00582 0.55 +0.5 611,509 - CCNA_00582 0.55 +1.5 611,581 + CCNA_00582 0.68 -0.8 611,586 + CCNA_00582 0.69 -3.0 611,586 + CCNA_00582 0.69 -2.3 611,589 - CCNA_00582 0.70 -1.3 611,589 - CCNA_00582 0.70 +1.5 611,589 - CCNA_00582 0.70 -1.9 611,698 + CCNA_00582 0.89 +1.9 611,706 - -0.6 611,717 - +0.5 611,779 + -0.5 611,779 + -1.0 611,779 + +0.4 611,779 + -1.5 611,779 + -1.1 611,779 + +0.6 611,779 + -1.8 611,779 + -0.6 611,779 + +1.1 611,779 + +0.0 611,779 + +0.5 611,779 + -1.6 611,779 + -0.2 611,779 + -1.1 611,779 + -0.6 611,779 + -1.0 611,779 + -0.5 611,779 + +0.2 611,779 + -0.4 611,779 + -1.2 611,779 + +1.5 611,779 + -0.8 611,779 + +0.7 611,779 + +0.5 611,779 + -1.6 611,779 + -1.9 611,779 + -1.0 611,779 + -0.2 611,779 + +0.5 611,787 - -1.8 611,787 - +2.5 611,787 - -1.9 611,787 - +2.5 611,787 - +0.9 611,787 - +2.5 611,787 - -0.3 611,787 - -0.8 611,787 - -0.3 611,787 - +1.2 611,787 - +0.1 611,787 - -1.1 611,787 - +0.2 611,787 - -0.1 611,787 - -0.1 611,787 - -0.1 611,787 - -0.3 611,787 - -0.8 611,787 - -1.0 611,787 - -0.1 611,787 - -0.5 611,787 - -1.0 611,787 - -2.3 611,787 - +0.7 611,787 - -0.3 611,787 - -1.0 611,798 + -1.0 611,806 - -0.0 611,812 + -0.8 611,820 - +0.7 611,820 - -1.8 611,820 - -0.7 611,830 + +0.3 611,889 - -0.3 611,896 - +0.5 611,903 + +0.5 611,973 + -2.7 611,973 + -1.4 612,027 - CCNA_00583 0.14 -1.5 612,042 - CCNA_00583 0.15 +1.5 612,047 - CCNA_00583 0.15 -1.4 612,057 + CCNA_00583 0.16 -2.0 612,057 + CCNA_00583 0.16 -0.5 612,065 - CCNA_00583 0.17 +0.4 612,078 - CCNA_00583 0.18 +0.9 612,088 - CCNA_00583 0.18 -0.3 612,090 + CCNA_00583 0.18 -1.2 612,092 + CCNA_00583 0.19 +2.8 612,098 - CCNA_00583 0.19 -1.2 612,098 - CCNA_00583 0.19 -1.1 612,113 + CCNA_00583 0.20 +0.9 612,113 + CCNA_00583 0.20 +0.5 612,134 + CCNA_00583 0.22 -0.3 612,136 - CCNA_00583 0.22 -0.1 612,147 - CCNA_00583 0.23 -1.4 612,195 + CCNA_00583 0.26 -0.5 612,203 - CCNA_00583 0.27 -1.0 612,212 + CCNA_00583 0.27 -0.1 612,222 + CCNA_00583 0.28 -0.1 612,343 + CCNA_00583 0.37 +0.9 612,364 + CCNA_00583 0.38 -0.4 612,371 - CCNA_00583 0.39 +0.2 612,372 - CCNA_00583 0.39 +0.9 612,372 - CCNA_00583 0.39 -0.5 612,372 - CCNA_00583 0.39 +0.9 612,372 - CCNA_00583 0.39 -1.0 612,404 - CCNA_00583 0.41 +3.5 612,411 + CCNA_00583 0.42 -1.4 612,419 - CCNA_00583 0.42 +0.5 612,420 - CCNA_00583 0.43 -1.1 612,433 + CCNA_00583 0.43 -0.0 612,433 + CCNA_00583 0.43 -0.8 612,456 + CCNA_00583 0.45 +0.2 612,456 + CCNA_00583 0.45 -0.1 612,461 + CCNA_00583 0.46 -0.7 612,464 - CCNA_00583 0.46 +0.9 612,464 - CCNA_00583 0.46 -0.5 612,469 - CCNA_00583 0.46 +1.5 612,484 + CCNA_00583 0.47 -1.0 612,484 + CCNA_00583 0.47 -0.8 612,569 + CCNA_00583 0.53 -0.8 612,569 + CCNA_00583 0.53 -0.1 612,595 + CCNA_00583 0.55 -0.3 612,618 + CCNA_00583 0.57 -1.0 612,621 - CCNA_00583 0.57 -0.2 612,621 - CCNA_00583 0.57 +2.5 612,621 - +0.9 612,621 - CCNA_00583 0.57 +1.6 612,626 - CCNA_00583 0.58 +0.9 612,626 - CCNA_00583 0.58 -0.7 612,657 - CCNA_00583 0.60 -1.2 612,677 - CCNA_00583 0.61 -0.8 612,724 - CCNA_00583 0.65 +0.9 612,756 + CCNA_00583 0.67 +2.5
Or see this region's nucleotide sequence