Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00503

Experiment: PYE with Chloride 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00501 and CCNA_00502 are separated by 56 nucleotidesCCNA_00502 and CCNA_00503 are separated by 98 nucleotidesCCNA_00503 and CCNA_00504 overlap by 4 nucleotidesCCNA_00504 and CCNA_00505 are separated by 204 nucleotides CCNA_00501: CCNA_00501 - glucosyltransferase, at 516,738 to 518,417 _00501 CCNA_00502: CCNA_00502 - glycosyl transferase family protein, at 518,474 to 519,211 _00502 CCNA_00503: CCNA_00503 - hypothetical protein, at 519,310 to 519,732 _00503 CCNA_00504: CCNA_00504 - 23S rRNA methyltransferase, at 519,729 to 520,193 _00504 CCNA_00505: CCNA_00505 - ubiquinol-cytochrome c reductase iron-sulfur subunit, at 520,398 to 520,949 _00505 Position (kb) 519 520Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 518.344 kb on + strandat 518.433 kb on - strandat 518.461 kb on + strandat 518.774 kb on + strand, within CCNA_00502at 519.206 kb on + strandat 519.214 kb on - strandat 519.214 kb on - strandat 519.251 kb on - strandat 519.258 kb on + strandat 519.259 kb on + strandat 519.259 kb on + strandat 519.259 kb on + strandat 519.259 kb on + strandat 519.259 kb on + strandat 519.259 kb on + strandat 519.267 kb on - strandat 519.267 kb on - strandat 519.267 kb on - strandat 519.299 kb on + strandat 519.312 kb on - strandat 519.312 kb on - strandat 519.328 kb on + strandat 519.336 kb on - strandat 519.365 kb on + strand, within CCNA_00503at 519.373 kb on - strand, within CCNA_00503at 519.375 kb on + strand, within CCNA_00503at 519.383 kb on - strand, within CCNA_00503at 519.384 kb on + strand, within CCNA_00503at 519.391 kb on - strand, within CCNA_00503at 519.414 kb on - strand, within CCNA_00503at 519.435 kb on + strand, within CCNA_00503at 519.435 kb on + strand, within CCNA_00503at 519.443 kb on - strand, within CCNA_00503at 519.448 kb on + strand, within CCNA_00503at 519.463 kb on - strand, within CCNA_00503at 519.467 kb on + strand, within CCNA_00503at 519.475 kb on - strand, within CCNA_00503at 519.480 kb on + strand, within CCNA_00503at 519.499 kb on + strand, within CCNA_00503at 519.582 kb on - strand, within CCNA_00503at 519.584 kb on + strand, within CCNA_00503at 519.592 kb on - strand, within CCNA_00503at 519.592 kb on - strand, within CCNA_00503at 519.599 kb on + strand, within CCNA_00503at 519.649 kb on - strand, within CCNA_00503at 519.655 kb on - strand, within CCNA_00503at 519.677 kb on + strand, within CCNA_00503at 519.685 kb on - strand, within CCNA_00503at 519.767 kb on - strandat 519.772 kb on - strandat 519.774 kb on - strandat 519.815 kb on + strand, within CCNA_00504at 519.815 kb on + strand, within CCNA_00504at 519.836 kb on + strand, within CCNA_00504at 519.856 kb on + strand, within CCNA_00504at 519.864 kb on - strand, within CCNA_00504at 519.910 kb on - strand, within CCNA_00504at 519.910 kb on - strand, within CCNA_00504at 519.960 kb on + strand, within CCNA_00504at 519.991 kb on + strand, within CCNA_00504at 519.991 kb on + strand, within CCNA_00504at 519.992 kb on - strand, within CCNA_00504at 520.047 kb on + strand, within CCNA_00504at 520.047 kb on + strand, within CCNA_00504at 520.055 kb on - strand, within CCNA_00504at 520.055 kb on - strandat 520.062 kb on + strand, within CCNA_00504at 520.062 kb on + strand, within CCNA_00504at 520.070 kb on - strand, within CCNA_00504at 520.090 kb on - strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.107 kb on + strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.136 kb on + strand, within CCNA_00504at 520.136 kb on + strand, within CCNA_00504at 520.163 kb on - strandat 520.171 kb on + strandat 520.253 kb on + strandat 520.253 kb on - strandat 520.307 kb on - strandat 520.333 kb on - strandat 520.334 kb on - strandat 520.355 kb on - strandat 520.355 kb on - strandat 520.394 kb on - strandat 520.449 kb on - strandat 520.509 kb on + strand, within CCNA_00505at 520.535 kb on + strand, within CCNA_00505at 520.543 kb on - strand, within CCNA_00505at 520.559 kb on + strand, within CCNA_00505at 520.615 kb on + strand, within CCNA_00505at 520.615 kb on + strand, within CCNA_00505at 520.661 kb on + strand, within CCNA_00505

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Chloride 100 mM
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518,344 + -0.0
518,433 - -0.3
518,461 + +0.3
518,774 + CCNA_00502 0.41 -0.0
519,206 + +2.0
519,214 - -1.3
519,214 - -2.1
519,251 - +0.7
519,258 + +1.3
519,259 + +0.5
519,259 + +1.4
519,259 + +1.3
519,259 + +0.8
519,259 + +0.5
519,259 + +0.1
519,267 - +0.3
519,267 - -0.3
519,267 - -0.5
519,299 + +0.8
519,312 - -0.9
519,312 - -2.6
519,328 + +0.1
519,336 - -0.7
519,365 + CCNA_00503 0.13 +0.3
519,373 - CCNA_00503 0.15 +0.7
519,375 + CCNA_00503 0.15 -1.2
519,383 - CCNA_00503 0.17 +0.7
519,384 + CCNA_00503 0.17 +0.7
519,391 - CCNA_00503 0.19 +2.3
519,414 - CCNA_00503 0.25 -1.4
519,435 + CCNA_00503 0.30 +1.2
519,435 + CCNA_00503 0.30 +1.5
519,443 - CCNA_00503 0.31 +0.7
519,448 + CCNA_00503 0.33 +2.9
519,463 - CCNA_00503 0.36 -0.0
519,467 + CCNA_00503 0.37 +0.1
519,475 - CCNA_00503 0.39 -1.4
519,480 + CCNA_00503 0.40 +0.0
519,499 + CCNA_00503 0.45 -0.0
519,582 - CCNA_00503 0.64 +1.3
519,584 + CCNA_00503 0.65 +1.1
519,592 - CCNA_00503 0.67 -0.9
519,592 - CCNA_00503 0.67 +1.0
519,599 + CCNA_00503 0.68 +0.8
519,649 - CCNA_00503 0.80 -1.1
519,655 - CCNA_00503 0.82 +0.7
519,677 + CCNA_00503 0.87 +0.8
519,685 - CCNA_00503 0.89 +0.7
519,767 - +3.3
519,772 - +1.3
519,774 - +0.4
519,815 + CCNA_00504 0.18 -0.3
519,815 + CCNA_00504 0.18 -2.5
519,836 + CCNA_00504 0.23 +0.5
519,856 + CCNA_00504 0.27 +4.3
519,864 - CCNA_00504 0.29 -0.1
519,910 - CCNA_00504 0.39 -1.9
519,910 - CCNA_00504 0.39 +0.5
519,960 + CCNA_00504 0.50 -1.4
519,991 + CCNA_00504 0.56 -0.3
519,991 + CCNA_00504 0.56 -1.6
519,992 - CCNA_00504 0.57 -1.6
520,047 + CCNA_00504 0.68 -0.0
520,047 + CCNA_00504 0.68 +0.7
520,055 - CCNA_00504 0.70 +0.9
520,055 - +1.3
520,062 + CCNA_00504 0.72 -0.8
520,062 + CCNA_00504 0.72 -0.8
520,070 - CCNA_00504 0.73 +0.3
520,090 - CCNA_00504 0.78 +0.3
520,106 + CCNA_00504 0.81 -1.7
520,106 + CCNA_00504 0.81 -0.8
520,106 + CCNA_00504 0.81 -0.8
520,106 + CCNA_00504 0.81 -0.4
520,106 + CCNA_00504 0.81 -1.0
520,106 + CCNA_00504 0.81 -1.3
520,106 + CCNA_00504 0.81 -1.9
520,106 + CCNA_00504 0.81 -2.5
520,106 + CCNA_00504 0.81 -1.6
520,107 + CCNA_00504 0.81 +0.1
520,114 - CCNA_00504 0.83 +0.5
520,114 - CCNA_00504 0.83 +1.0
520,114 - CCNA_00504 0.83 -1.4
520,114 - CCNA_00504 0.83 -0.9
520,114 - CCNA_00504 0.83 -0.5
520,114 - CCNA_00504 0.83 -1.8
520,114 - CCNA_00504 0.83 -0.3
520,115 - CCNA_00504 0.83 +1.3
520,115 - CCNA_00504 0.83 -2.2
520,115 - CCNA_00504 0.83 +1.7
520,115 - CCNA_00504 0.83 -0.5
520,115 - CCNA_00504 0.83 -1.6
520,115 - CCNA_00504 0.83 +1.7
520,136 + CCNA_00504 0.88 -0.7
520,136 + CCNA_00504 0.88 +1.3
520,163 - +0.3
520,171 + -0.9
520,253 + +2.6
520,253 - -0.9
520,307 - -0.3
520,333 - -0.2
520,334 - +1.1
520,355 - -0.0
520,355 - +0.9
520,394 - -1.4
520,449 - -0.5
520,509 + CCNA_00505 0.20 +1.5
520,535 + CCNA_00505 0.25 +2.2
520,543 - CCNA_00505 0.26 +1.3
520,559 + CCNA_00505 0.29 +2.0
520,615 + CCNA_00505 0.39 +1.6
520,615 + CCNA_00505 0.39 +2.6
520,661 + CCNA_00505 0.48 +1.7

Or see this region's nucleotide sequence