Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01810

Experiment: Methyl-B-D-galactopyranoside 20mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01805 and CA265_RS01810 overlap by 11 nucleotidesCA265_RS01810 and CA265_RS01815 are separated by 165 nucleotidesCA265_RS01815 and CA265_RS01820 are separated by 152 nucleotides CA265_RS01805: CA265_RS01805 - hypothetical protein, at 450,740 to 451,921 _RS01805 CA265_RS01810: CA265_RS01810 - asparagine synthase (glutamine-hydrolyzing), at 451,911 to 453,698 _RS01810 CA265_RS01815: CA265_RS01815 - antitermination protein NusG, at 453,864 to 454,367 _RS01815 CA265_RS01820: CA265_RS01820 - hypothetical protein, at 454,520 to 456,925 _RS01820 Position (kb) 451 452 453 454Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 450.963 kb on - strand, within CA265_RS01805at 451.056 kb on - strand, within CA265_RS01805at 451.107 kb on - strand, within CA265_RS01805at 451.184 kb on + strand, within CA265_RS01805at 451.233 kb on - strand, within CA265_RS01805at 451.251 kb on + strand, within CA265_RS01805at 451.252 kb on - strand, within CA265_RS01805at 451.252 kb on - strand, within CA265_RS01805at 451.254 kb on - strand, within CA265_RS01805at 451.262 kb on + strand, within CA265_RS01805at 451.262 kb on + strand, within CA265_RS01805at 451.274 kb on + strand, within CA265_RS01805at 451.285 kb on + strand, within CA265_RS01805at 451.285 kb on + strand, within CA265_RS01805at 451.286 kb on - strand, within CA265_RS01805at 451.301 kb on - strand, within CA265_RS01805at 451.301 kb on - strand, within CA265_RS01805at 451.303 kb on - strand, within CA265_RS01805at 451.303 kb on - strand, within CA265_RS01805at 451.303 kb on - strand, within CA265_RS01805at 451.303 kb on - strand, within CA265_RS01805at 451.359 kb on - strand, within CA265_RS01805at 451.365 kb on + strand, within CA265_RS01805at 451.365 kb on + strand, within CA265_RS01805at 451.377 kb on - strand, within CA265_RS01805at 451.402 kb on + strand, within CA265_RS01805at 451.406 kb on + strand, within CA265_RS01805at 451.411 kb on - strand, within CA265_RS01805at 451.411 kb on - strand, within CA265_RS01805at 451.439 kb on + strand, within CA265_RS01805at 451.492 kb on + strand, within CA265_RS01805at 451.493 kb on - strand, within CA265_RS01805at 451.510 kb on + strand, within CA265_RS01805at 451.554 kb on - strand, within CA265_RS01805at 451.591 kb on - strand, within CA265_RS01805at 451.641 kb on - strand, within CA265_RS01805at 451.649 kb on - strand, within CA265_RS01805at 451.723 kb on + strand, within CA265_RS01805at 451.778 kb on - strand, within CA265_RS01805at 451.782 kb on + strand, within CA265_RS01805at 451.783 kb on - strand, within CA265_RS01805at 451.792 kb on - strand, within CA265_RS01805at 451.794 kb on - strand, within CA265_RS01805at 451.835 kb on + strandat 451.836 kb on - strandat 451.867 kb on + strandat 451.868 kb on - strandat 451.876 kb on + strandat 451.913 kb on - strandat 451.925 kb on - strandat 451.926 kb on + strandat 451.926 kb on + strandat 451.926 kb on + strandat 452.003 kb on + strandat 452.107 kb on - strand, within CA265_RS01810at 452.284 kb on + strand, within CA265_RS01810at 452.284 kb on + strand, within CA265_RS01810at 452.285 kb on - strand, within CA265_RS01810at 452.333 kb on + strand, within CA265_RS01810at 452.440 kb on - strand, within CA265_RS01810at 452.443 kb on + strand, within CA265_RS01810at 452.477 kb on - strand, within CA265_RS01810at 452.479 kb on - strand, within CA265_RS01810at 452.651 kb on + strand, within CA265_RS01810at 452.666 kb on + strand, within CA265_RS01810at 452.696 kb on + strand, within CA265_RS01810at 452.696 kb on + strand, within CA265_RS01810at 452.697 kb on - strand, within CA265_RS01810at 452.703 kb on + strand, within CA265_RS01810at 452.838 kb on - strand, within CA265_RS01810at 452.838 kb on - strand, within CA265_RS01810at 452.838 kb on - strand, within CA265_RS01810at 452.855 kb on + strand, within CA265_RS01810at 452.858 kb on + strand, within CA265_RS01810at 452.859 kb on - strand, within CA265_RS01810at 452.859 kb on - strand, within CA265_RS01810at 452.861 kb on + strand, within CA265_RS01810at 452.867 kb on + strand, within CA265_RS01810at 452.879 kb on + strand, within CA265_RS01810at 452.913 kb on + strand, within CA265_RS01810at 452.913 kb on + strand, within CA265_RS01810at 452.921 kb on + strand, within CA265_RS01810at 452.922 kb on - strand, within CA265_RS01810at 453.007 kb on + strand, within CA265_RS01810at 453.008 kb on - strand, within CA265_RS01810at 453.008 kb on - strand, within CA265_RS01810at 453.032 kb on - strand, within CA265_RS01810at 453.032 kb on - strand, within CA265_RS01810at 453.032 kb on - strand, within CA265_RS01810at 453.042 kb on - strand, within CA265_RS01810at 453.117 kb on - strand, within CA265_RS01810at 453.117 kb on - strand, within CA265_RS01810at 453.117 kb on - strand, within CA265_RS01810at 453.118 kb on + strand, within CA265_RS01810at 453.182 kb on + strand, within CA265_RS01810at 453.183 kb on - strand, within CA265_RS01810at 453.194 kb on + strand, within CA265_RS01810at 453.247 kb on + strand, within CA265_RS01810at 453.247 kb on + strand, within CA265_RS01810at 453.248 kb on - strand, within CA265_RS01810at 453.248 kb on - strand, within CA265_RS01810at 453.302 kb on + strand, within CA265_RS01810at 453.326 kb on + strand, within CA265_RS01810at 453.373 kb on + strand, within CA265_RS01810at 453.373 kb on + strand, within CA265_RS01810at 453.411 kb on - strand, within CA265_RS01810at 453.417 kb on + strand, within CA265_RS01810at 453.418 kb on - strand, within CA265_RS01810at 453.449 kb on - strand, within CA265_RS01810at 453.449 kb on - strand, within CA265_RS01810at 453.454 kb on + strand, within CA265_RS01810at 453.469 kb on + strand, within CA265_RS01810at 453.469 kb on + strand, within CA265_RS01810at 453.525 kb on - strandat 453.583 kb on + strandat 453.583 kb on + strandat 453.583 kb on + strandat 453.584 kb on - strandat 453.617 kb on + strandat 453.672 kb on - strandat 453.674 kb on + strandat 453.675 kb on - strandat 453.687 kb on + strandat 453.688 kb on - strandat 453.784 kb on + strandat 453.798 kb on + strandat 453.799 kb on - strandat 453.799 kb on - strandat 453.799 kb on - strandat 453.802 kb on + strandat 453.817 kb on + strandat 453.894 kb on - strandat 453.899 kb on + strandat 453.899 kb on + strandat 453.924 kb on + strand, within CA265_RS01815at 453.938 kb on + strand, within CA265_RS01815at 453.951 kb on - strand, within CA265_RS01815at 453.954 kb on + strand, within CA265_RS01815at 453.955 kb on - strand, within CA265_RS01815at 453.955 kb on - strand, within CA265_RS01815at 453.976 kb on - strand, within CA265_RS01815at 453.976 kb on - strand, within CA265_RS01815at 453.976 kb on - strand, within CA265_RS01815at 453.984 kb on - strand, within CA265_RS01815at 454.022 kb on + strand, within CA265_RS01815at 454.022 kb on + strand, within CA265_RS01815at 454.022 kb on + strand, within CA265_RS01815at 454.023 kb on - strand, within CA265_RS01815at 454.123 kb on + strand, within CA265_RS01815at 454.127 kb on + strand, within CA265_RS01815at 454.165 kb on + strand, within CA265_RS01815at 454.182 kb on - strand, within CA265_RS01815at 454.247 kb on + strand, within CA265_RS01815at 454.259 kb on + strand, within CA265_RS01815at 454.362 kb on + strandat 454.373 kb on - strandat 454.377 kb on + strandat 454.377 kb on + strandat 454.377 kb on + strandat 454.377 kb on + strandat 454.378 kb on - strandat 454.379 kb on + strandat 454.389 kb on + strandat 454.390 kb on - strandat 454.390 kb on - strandat 454.430 kb on + strandat 454.471 kb on + strandat 454.564 kb on - strandat 454.564 kb on - strandat 454.622 kb on - strandat 454.629 kb on + strandat 454.641 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methyl-B-D-galactopyranoside 20mM (C)
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450,963 - CA265_RS01805 0.19 -1.1
451,056 - CA265_RS01805 0.27 -0.7
451,107 - CA265_RS01805 0.31 -0.9
451,184 + CA265_RS01805 0.38 -0.7
451,233 - CA265_RS01805 0.42 +0.5
451,251 + CA265_RS01805 0.43 -1.1
451,252 - CA265_RS01805 0.43 -0.9
451,252 - CA265_RS01805 0.43 -1.1
451,254 - CA265_RS01805 0.43 +1.6
451,262 + CA265_RS01805 0.44 -1.2
451,262 + CA265_RS01805 0.44 -1.3
451,274 + CA265_RS01805 0.45 -0.4
451,285 + CA265_RS01805 0.46 -1.5
451,285 + CA265_RS01805 0.46 +0.7
451,286 - CA265_RS01805 0.46 -0.4
451,301 - CA265_RS01805 0.47 -1.9
451,301 - CA265_RS01805 0.47 +1.0
451,303 - CA265_RS01805 0.48 -3.3
451,303 - CA265_RS01805 0.48 -0.7
451,303 - CA265_RS01805 0.48 +1.1
451,303 - CA265_RS01805 0.48 -0.9
451,359 - CA265_RS01805 0.52 -2.2
451,365 + CA265_RS01805 0.53 -2.7
451,365 + CA265_RS01805 0.53 -1.2
451,377 - CA265_RS01805 0.54 +0.8
451,402 + CA265_RS01805 0.56 +0.1
451,406 + CA265_RS01805 0.56 -0.5
451,411 - CA265_RS01805 0.57 +0.1
451,411 - CA265_RS01805 0.57 -3.1
451,439 + CA265_RS01805 0.59 -1.1
451,492 + CA265_RS01805 0.64 -0.2
451,493 - CA265_RS01805 0.64 -1.4
451,510 + CA265_RS01805 0.65 -1.1
451,554 - CA265_RS01805 0.69 -0.4
451,591 - CA265_RS01805 0.72 -1.1
451,641 - CA265_RS01805 0.76 -0.2
451,649 - CA265_RS01805 0.77 -0.4
451,723 + CA265_RS01805 0.83 -0.9
451,778 - CA265_RS01805 0.88 -0.7
451,782 + CA265_RS01805 0.88 +0.3
451,783 - CA265_RS01805 0.88 +1.5
451,792 - CA265_RS01805 0.89 -1.5
451,794 - CA265_RS01805 0.89 +1.3
451,835 + +0.5
451,836 - -0.6
451,867 + -1.2
451,868 - -1.9
451,876 + -1.4
451,913 - -1.3
451,925 - -0.5
451,926 + -0.5
451,926 + -1.2
451,926 + -0.3
452,003 + -0.4
452,107 - CA265_RS01810 0.11 -1.8
452,284 + CA265_RS01810 0.21 -0.0
452,284 + CA265_RS01810 0.21 -0.4
452,285 - CA265_RS01810 0.21 -0.9
452,333 + CA265_RS01810 0.24 -0.0
452,440 - CA265_RS01810 0.30 +0.8
452,443 + CA265_RS01810 0.30 +0.1
452,477 - CA265_RS01810 0.32 -0.6
452,479 - CA265_RS01810 0.32 +0.7
452,651 + CA265_RS01810 0.41 -1.7
452,666 + CA265_RS01810 0.42 +0.0
452,696 + CA265_RS01810 0.44 -0.8
452,696 + CA265_RS01810 0.44 -0.7
452,697 - CA265_RS01810 0.44 -0.6
452,703 + CA265_RS01810 0.44 -0.6
452,838 - CA265_RS01810 0.52 -0.3
452,838 - CA265_RS01810 0.52 -0.4
452,838 - CA265_RS01810 0.52 -1.7
452,855 + CA265_RS01810 0.53 -0.9
452,858 + CA265_RS01810 0.53 -1.7
452,859 - CA265_RS01810 0.53 +0.1
452,859 - CA265_RS01810 0.53 -0.4
452,861 + CA265_RS01810 0.53 -0.4
452,867 + CA265_RS01810 0.53 -0.3
452,879 + CA265_RS01810 0.54 +0.8
452,913 + CA265_RS01810 0.56 +0.2
452,913 + CA265_RS01810 0.56 -2.8
452,921 + CA265_RS01810 0.56 -1.2
452,922 - CA265_RS01810 0.57 +1.7
453,007 + CA265_RS01810 0.61 -1.0
453,008 - CA265_RS01810 0.61 -0.6
453,008 - CA265_RS01810 0.61 -0.6
453,032 - CA265_RS01810 0.63 +0.5
453,032 - CA265_RS01810 0.63 -0.4
453,032 - CA265_RS01810 0.63 -0.1
453,042 - CA265_RS01810 0.63 +1.6
453,117 - CA265_RS01810 0.67 +1.7
453,117 - CA265_RS01810 0.67 +0.6
453,117 - CA265_RS01810 0.67 -1.1
453,118 + CA265_RS01810 0.68 -0.6
453,182 + CA265_RS01810 0.71 -1.2
453,183 - CA265_RS01810 0.71 -0.8
453,194 + CA265_RS01810 0.72 -0.9
453,247 + CA265_RS01810 0.75 -0.9
453,247 + CA265_RS01810 0.75 +0.2
453,248 - CA265_RS01810 0.75 +0.0
453,248 - CA265_RS01810 0.75 -1.0
453,302 + CA265_RS01810 0.78 +0.3
453,326 + CA265_RS01810 0.79 +0.2
453,373 + CA265_RS01810 0.82 -0.0
453,373 + CA265_RS01810 0.82 -0.8
453,411 - CA265_RS01810 0.84 +0.6
453,417 + CA265_RS01810 0.84 +0.7
453,418 - CA265_RS01810 0.84 -0.7
453,449 - CA265_RS01810 0.86 +0.9
453,449 - CA265_RS01810 0.86 +0.1
453,454 + CA265_RS01810 0.86 -0.8
453,469 + CA265_RS01810 0.87 -0.6
453,469 + CA265_RS01810 0.87 -0.5
453,525 - -0.3
453,583 + -1.0
453,583 + +0.1
453,583 + +0.0
453,584 - +1.1
453,617 + -0.3
453,672 - -0.4
453,674 + -0.9
453,675 - -0.0
453,687 + +0.8
453,688 - -1.4
453,784 + -0.3
453,798 + +0.5
453,799 - -1.3
453,799 - -2.0
453,799 - -0.7
453,802 + -0.9
453,817 + +0.1
453,894 - -1.1
453,899 + +0.4
453,899 + -0.4
453,924 + CA265_RS01815 0.12 -1.2
453,938 + CA265_RS01815 0.15 +2.1
453,951 - CA265_RS01815 0.17 -0.1
453,954 + CA265_RS01815 0.18 +0.2
453,955 - CA265_RS01815 0.18 +1.1
453,955 - CA265_RS01815 0.18 -1.7
453,976 - CA265_RS01815 0.22 -0.7
453,976 - CA265_RS01815 0.22 +0.0
453,976 - CA265_RS01815 0.22 -0.6
453,984 - CA265_RS01815 0.24 +0.1
454,022 + CA265_RS01815 0.31 -0.6
454,022 + CA265_RS01815 0.31 -0.4
454,022 + CA265_RS01815 0.31 -0.5
454,023 - CA265_RS01815 0.32 +0.3
454,123 + CA265_RS01815 0.51 +0.9
454,127 + CA265_RS01815 0.52 -0.0
454,165 + CA265_RS01815 0.60 -0.4
454,182 - CA265_RS01815 0.63 -0.9
454,247 + CA265_RS01815 0.76 -1.1
454,259 + CA265_RS01815 0.78 -0.4
454,362 + +0.1
454,373 - -0.4
454,377 + -0.1
454,377 + +0.1
454,377 + -0.3
454,377 + +1.7
454,378 - -0.9
454,379 + +1.1
454,389 + +0.0
454,390 - -1.3
454,390 - -0.9
454,430 + -0.9
454,471 + +0.3
454,564 - -1.0
454,564 - -1.6
454,622 - +0.3
454,629 + -0.2
454,641 + +0.1

Or see this region's nucleotide sequence