Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_006019

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
2,340,574	+		ABIE53_006017	0.84	-1.3
2,340,699	+				-0.5
2,340,823	+				-0.3
2,340,824	-				-0.1
2,340,824	-				+1.3
2,340,824	-				+1.3
2,340,841	+				-2.6
2,340,841	+				+0.5
2,340,841	+				+0.5
2,340,841	+				+0.6
2,340,842	-				-3.3
2,340,842	-				-1.3
2,340,853	+				+0.3
2,341,034	-		ABIE53_006018	0.33	-0.9
2,341,440	+		ABIE53_006018	0.85	+0.1
2,341,440	+		ABIE53_006018	0.85	-0.2
2,341,440	+		ABIE53_006018	0.85	-1.1
2,341,440	+		ABIE53_006018	0.85	+1.9
2,341,440	+		ABIE53_006018	0.85	+2.0
2,341,440	+		ABIE53_006018	0.85	+1.5
2,341,441	-		ABIE53_006018	0.85	-1.3
2,341,441	-		ABIE53_006018	0.85	+1.5
2,341,441	-		ABIE53_006018	0.85	-1.9
2,341,441	-		ABIE53_006018	0.85	-0.8
2,341,441	-		ABIE53_006018	0.85	-1.3
2,341,478	-				+0.5
2,341,478	-				-1.1
2,341,492	+				+1.0
2,341,493	-				+0.7
2,341,958	+		ABIE53_006019	0.18	-0.1
2,342,045	+		ABIE53_006019	0.22	+0.4
2,342,045	+		ABIE53_006019	0.22	-2.0
2,342,045	+		ABIE53_006019	0.22	+0.9
2,342,046	-		ABIE53_006019	0.22	-0.2
2,342,046	-		ABIE53_006019	0.22	+1.0
2,342,046	-		ABIE53_006019	0.22	-1.5
2,342,046	-		ABIE53_006019	0.22	-0.3
2,342,046	-		ABIE53_006019	0.22	+0.1
2,342,046	-		ABIE53_006019	0.22	+2.8
2,342,666	+		ABIE53_006019	0.50	-0.9
2,342,666	+		ABIE53_006019	0.50	+0.4
2,342,667	-		ABIE53_006019	0.50	-0.1
2,342,675	+		ABIE53_006019	0.51	+2.3
2,342,811	+		ABIE53_006019	0.57	-0.5
2,342,852	+		ABIE53_006019	0.59	+1.2
2,342,852	+		ABIE53_006019	0.59	+0.5
2,342,853	-		ABIE53_006019	0.59	+0.3
2,342,853	-		ABIE53_006019	0.59	+0.7
2,342,865	+		ABIE53_006019	0.59	+1.1
2,342,866	-		ABIE53_006019	0.59	+2.1
2,342,867	+		ABIE53_006019	0.59	+1.0
2,342,867	+		ABIE53_006019	0.59	+1.5
2,342,867	+		ABIE53_006019	0.59	+0.0
2,342,867	+		ABIE53_006019	0.59	+1.5
2,342,867	+		ABIE53_006019	0.59	-0.2
2,342,867	+		ABIE53_006019	0.59	-1.3
2,342,867	+		ABIE53_006019	0.59	+1.5
2,342,867	+		ABIE53_006019	0.59	-1.7
2,342,867	+		ABIE53_006019	0.59	-0.2
2,342,867	+		ABIE53_006019	0.59	-2.1
2,342,867	+		ABIE53_006019	0.59	-0.9
2,342,867	+		ABIE53_006019	0.59	-1.7
2,342,867	+		ABIE53_006019	0.59	+1.5
2,342,868	-		ABIE53_006019	0.60	+2.2
2,342,868	-		ABIE53_006019	0.60	-0.9
2,342,868	-		ABIE53_006019	0.60	+0.4
2,342,868	-		ABIE53_006019	0.60	+1.5
2,342,868	-		ABIE53_006019	0.60	-2.0
2,342,868	-		ABIE53_006019	0.60	-1.1
2,342,868	-		ABIE53_006019	0.60	-1.3
2,342,868	-		ABIE53_006019	0.60	-1.9
2,342,868	-		ABIE53_006019	0.60	+1.7
2,342,943	-		ABIE53_006019	0.63	+0.2
2,343,158	+		ABIE53_006019	0.73	+1.5
2,343,158	+		ABIE53_006019	0.73	-0.9
2,343,159	-		ABIE53_006019	0.73	+3.8
2,343,159	-		ABIE53_006019	0.73	+3.5
2,343,159	-		ABIE53_006019	0.73	+1.1
2,343,159	-		ABIE53_006019	0.73	-0.5
2,343,362	+		ABIE53_006019	0.82	+1.5
2,343,362	+		ABIE53_006019	0.82	+1.4
2,343,392	+		ABIE53_006019	0.83	-1.0
2,343,392	+		ABIE53_006019	0.83	+0.5
2,343,392	+		ABIE53_006019	0.83	-0.3
2,343,392	+		ABIE53_006019	0.83	-2.7
2,343,393	-		ABIE53_006019	0.83	+2.2
2,343,393	-		ABIE53_006019	0.83	-1.9
2,343,393	-		ABIE53_006019	0.83	+3.0
2,343,422	+		ABIE53_006019	0.85	+1.9
2,343,422	+		ABIE53_006019	0.85	+1.5
2,343,422	+		ABIE53_006019	0.85	+1.5
2,343,423	-		ABIE53_006019	0.85	-0.9
2,343,423	-		ABIE53_006019	0.85	-1.5
2,343,423	-		ABIE53_006019	0.85	+1.0
2,343,423	-		ABIE53_006019	0.85	-0.1
2,343,460	+		ABIE53_006019	0.86	+1.0
2,343,460	+		ABIE53_006019	0.86	-1.8
2,343,460	+		ABIE53_006019	0.86	-0.9
2,343,460	+		ABIE53_006019	0.86	+0.5
2,343,460	+		ABIE53_006019	0.86	-0.1
2,343,460	+		ABIE53_006019	0.86	+0.1
2,343,461	-		ABIE53_006019	0.86	+1.2
2,343,461	-		ABIE53_006019	0.86	-1.9
2,343,461	-		ABIE53_006019	0.86	+1.0
2,343,594	-				-0.1
2,343,596	+				+4.0
2,343,597	-				+3.6
2,343,597	-				-0.1
2,343,816	+				+1.6
2,343,817	-				-1.3
2,343,950	+				-0.1
2,343,950	+				+3.1
2,343,950	+				-0.8
2,343,951	-				-3.2
2,343,951	-				+0.5
2,343,951	-				-2.4
2,343,959	+				+1.0
2,343,985	+				+0.5
2,343,985	+				+0.7
2,343,985	+				-0.2
2,343,985	+				+1.2
2,343,985	+				-0.2
2,343,986	-				-0.4
2,343,986	-				+0.6
2,343,986	-				-1.3
2,343,986	-				+0.2
2,343,986	-				-0.4
2,343,986	-				-0.3
2,343,986	-				+2.6
2,343,986	-				-0.4
2,344,002	-				-1.9
2,344,059	+				-0.6
2,344,059	+				+0.5
2,344,059	+				-1.7
2,344,059	+				-1.1
2,344,060	-				+0.3
2,344,060	-				-4.0
2,344,252	+		ABIE53_006020	0.14	-0.1
2,344,253	-		ABIE53_006020	0.14	-0.3
2,344,253	-		ABIE53_006020	0.14	-0.1
2,344,288	+		ABIE53_006020	0.16	+2.1
2,344,289	-		ABIE53_006020	0.16	-0.1
2,344,334	-		ABIE53_006020	0.20	+2.9
2,344,334	-		ABIE53_006020	0.20	+1.2
2,344,420	+		ABIE53_006020	0.27	+0.5
2,344,421	-		ABIE53_006020	0.27	+0.2
2,344,583	+		ABIE53_006020	0.40	+0.6
2,344,583	+		ABIE53_006020	0.40	+1.7
2,344,583	+		ABIE53_006020	0.40	+0.1
2,344,584	-		ABIE53_006020	0.40	+0.3
2,344,636	+		ABIE53_006020	0.44	+1.7
2,344,636	+		ABIE53_006020	0.44	+1.2
2,344,636	+		ABIE53_006020	0.44	-1.5
2,344,636	+		ABIE53_006020	0.44	+1.0
2,344,636	+		ABIE53_006020	0.44	+0.5
2,344,636	+		ABIE53_006020	0.44	+0.4
2,344,636	+		ABIE53_006020	0.44	+0.3
2,344,637	-		ABIE53_006020	0.44	+1.5
2,344,637	-		ABIE53_006020	0.44	-1.4
2,344,637	-		ABIE53_006020	0.44	+1.2
2,344,693	+		ABIE53_006020	0.48	-0.1
2,344,693	+		ABIE53_006020	0.48	-0.9
2,344,693	+		ABIE53_006020	0.48	-1.9
2,344,693	+		ABIE53_006020	0.48	+0.2
2,344,693	+		ABIE53_006020	0.48	+2.6
2,344,693	+		ABIE53_006020	0.48	+3.1
2,344,694	-		ABIE53_006020	0.48	-2.8
2,344,694	-		ABIE53_006020	0.48	+1.0
2,344,729	+		ABIE53_006020	0.51	+1.6