Experiment: MoYLS4 with Doxycycline hyclate 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2618 and DvMF_2619 are separated by 24 nucleotides DvMF_2619 and DvMF_2620 are separated by 158 nucleotides DvMF_2620 and DvMF_2621 are separated by 10 nucleotides
DvMF_2618: DvMF_2618 - Dinitrogenase iron-molybdenum cofactor biosynthesis protein (RefSeq), at 3,307,621 to 3,308,880
_2618
DvMF_2619: DvMF_2619 - ferredoxin, 2Fe-2S (RefSeq), at 3,308,905 to 3,309,207
_2619
DvMF_2620: DvMF_2620 - nitrogenase MoFe cofactor biosynthesis protein NifE (RefSeq), at 3,309,366 to 3,310,790
_2620
DvMF_2621: DvMF_2621 - Nitrogenase (RefSeq), at 3,310,801 to 3,312,417
_2621
Position (kb)
3309
3310
3311 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3308.717 kb on - strand, within DvMF_2618 at 3308.848 kb on + strand at 3308.964 kb on - strand, within DvMF_2619 at 3309.124 kb on + strand, within DvMF_2619 at 3309.302 kb on - strand at 3309.504 kb on - strand at 3309.549 kb on + strand, within DvMF_2620 at 3309.551 kb on + strand, within DvMF_2620 at 3309.571 kb on - strand, within DvMF_2620 at 3309.585 kb on - strand, within DvMF_2620 at 3309.606 kb on + strand, within DvMF_2620 at 3309.999 kb on - strand, within DvMF_2620 at 3310.113 kb on + strand, within DvMF_2620 at 3310.113 kb on + strand, within DvMF_2620 at 3310.113 kb on + strand, within DvMF_2620 at 3310.121 kb on - strand, within DvMF_2620 at 3310.121 kb on - strand, within DvMF_2620 at 3310.409 kb on + strand, within DvMF_2620 at 3310.409 kb on + strand, within DvMF_2620 at 3310.417 kb on - strand, within DvMF_2620 at 3310.704 kb on + strand at 3310.944 kb on - strand at 3310.951 kb on - strand at 3311.122 kb on - strand, within DvMF_2621 at 3311.399 kb on + strand, within DvMF_2621 at 3311.467 kb on + strand, within DvMF_2621 at 3311.477 kb on + strand, within DvMF_2621 at 3311.485 kb on - strand, within DvMF_2621 at 3311.585 kb on + strand, within DvMF_2621 at 3311.585 kb on + strand, within DvMF_2621 at 3311.594 kb on + strand, within DvMF_2621 at 3311.627 kb on + strand, within DvMF_2621
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.0156 mg/ml remove 3,308,717 - DvMF_2618 0.87 -2.4 3,308,848 + +0.0 3,308,964 - DvMF_2619 0.19 +0.9 3,309,124 + DvMF_2619 0.72 -2.3 3,309,302 - -1.6 3,309,504 - -1.3 3,309,549 + DvMF_2620 0.13 -0.4 3,309,551 + DvMF_2620 0.13 -0.8 3,309,571 - DvMF_2620 0.14 -0.0 3,309,585 - DvMF_2620 0.15 -3.1 3,309,606 + DvMF_2620 0.17 -1.3 3,309,999 - DvMF_2620 0.44 -0.8 3,310,113 + DvMF_2620 0.52 -1.0 3,310,113 + DvMF_2620 0.52 -0.3 3,310,113 + DvMF_2620 0.52 -2.1 3,310,121 - DvMF_2620 0.53 -2.6 3,310,121 - DvMF_2620 0.53 -0.2 3,310,409 + DvMF_2620 0.73 -0.1 3,310,409 + DvMF_2620 0.73 -0.6 3,310,417 - DvMF_2620 0.74 -1.0 3,310,704 + -3.6 3,310,944 - -2.2 3,310,951 - -0.9 3,311,122 - DvMF_2621 0.20 -1.9 3,311,399 + DvMF_2621 0.37 -0.9 3,311,467 + DvMF_2621 0.41 -2.2 3,311,477 + DvMF_2621 0.42 -3.7 3,311,485 - DvMF_2621 0.42 -0.4 3,311,585 + DvMF_2621 0.48 -0.9 3,311,585 + DvMF_2621 0.48 +0.6 3,311,594 + DvMF_2621 0.49 -1.1 3,311,627 + DvMF_2621 0.51 -0.7
Or see this region's nucleotide sequence