Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2315

Experiment: MoYLS4 with Doxycycline hyclate 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2313 and DvMF_2314 are separated by 50 nucleotidesDvMF_2314 and DvMF_2315 overlap by 4 nucleotidesDvMF_2315 and DvMF_2316 overlap by 29 nucleotidesDvMF_2316 and DvMF_2317 are separated by 42 nucleotides DvMF_2313: DvMF_2313 - DNA-directed DNA polymerase (RefSeq), at 2,911,502 to 2,912,947 _2313 DvMF_2314: DvMF_2314 - aminotransferase class IV (RefSeq), at 2,912,998 to 2,913,771 _2314 DvMF_2315: DvMF_2315 - Chorismate binding-like protein (RefSeq), at 2,913,768 to 2,915,411 _2315 DvMF_2316: DvMF_2316 - glutamine amidotransferase class-I (RefSeq), at 2,915,383 to 2,916,225 _2316 DvMF_2317: DvMF_2317 - protein of unknown function DUF152 (RefSeq), at 2,916,268 to 2,917,101 _2317 Position (kb) 2913 2914 2915 2916Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2912.980 kb on + strandat 2913.192 kb on - strand, within DvMF_2314at 2913.194 kb on + strand, within DvMF_2314at 2913.796 kb on + strandat 2913.796 kb on + strandat 2913.845 kb on - strandat 2913.899 kb on - strandat 2914.103 kb on + strand, within DvMF_2315at 2914.169 kb on - strand, within DvMF_2315at 2914.228 kb on + strand, within DvMF_2315at 2914.236 kb on - strand, within DvMF_2315at 2914.470 kb on - strand, within DvMF_2315at 2914.478 kb on + strand, within DvMF_2315at 2914.514 kb on + strand, within DvMF_2315at 2914.566 kb on + strand, within DvMF_2315at 2914.757 kb on + strand, within DvMF_2315at 2914.757 kb on + strand, within DvMF_2315at 2914.843 kb on - strand, within DvMF_2315at 2915.109 kb on - strand, within DvMF_2315at 2915.174 kb on + strand, within DvMF_2315at 2915.261 kb on + strandat 2915.360 kb on - strandat 2915.364 kb on + strandat 2915.585 kb on - strand, within DvMF_2316at 2915.669 kb on + strand, within DvMF_2316at 2915.693 kb on - strand, within DvMF_2316at 2915.699 kb on - strand, within DvMF_2316at 2916.045 kb on + strand, within DvMF_2316at 2916.076 kb on - strand, within DvMF_2316at 2916.237 kb on - strandat 2916.255 kb on + strandat 2916.360 kb on + strand, within DvMF_2317

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.0156 mg/ml
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2,912,980 + -1.8
2,913,192 - DvMF_2314 0.25 -0.4
2,913,194 + DvMF_2314 0.25 +0.4
2,913,796 + -1.2
2,913,796 + -1.6
2,913,845 - -0.5
2,913,899 - -0.1
2,914,103 + DvMF_2315 0.20 -2.1
2,914,169 - DvMF_2315 0.24 -1.0
2,914,228 + DvMF_2315 0.28 -1.2
2,914,236 - DvMF_2315 0.28 -4.6
2,914,470 - DvMF_2315 0.43 -0.3
2,914,478 + DvMF_2315 0.43 -0.4
2,914,514 + DvMF_2315 0.45 -3.7
2,914,566 + DvMF_2315 0.49 -0.1
2,914,757 + DvMF_2315 0.60 -4.3
2,914,757 + DvMF_2315 0.60 -0.4
2,914,843 - DvMF_2315 0.65 -4.5
2,915,109 - DvMF_2315 0.82 -1.3
2,915,174 + DvMF_2315 0.86 -0.8
2,915,261 + -0.3
2,915,360 - -0.0
2,915,364 + -1.3
2,915,585 - DvMF_2316 0.24 -0.7
2,915,669 + DvMF_2316 0.34 -3.3
2,915,693 - DvMF_2316 0.37 +0.2
2,915,699 - DvMF_2316 0.37 -1.0
2,916,045 + DvMF_2316 0.79 -0.6
2,916,076 - DvMF_2316 0.82 -0.7
2,916,237 - -0.9
2,916,255 + -0.0
2,916,360 + DvMF_2317 0.11 -1.3

Or see this region's nucleotide sequence