Experiment: MoYLS4 with Doxycycline hyclate 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1699 and DvMF_1700 are separated by 209 nucleotides DvMF_1700 and DvMF_1701 are separated by 313 nucleotides
DvMF_1699: DvMF_1699 - non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family (RefSeq), at 2,072,403 to 2,073,062
_1699
DvMF_1700: DvMF_1700 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 2,073,272 to 2,075,047
_1700
DvMF_1701: DvMF_1701 - MiaB-like tRNA modifying enzyme YliG (RefSeq), at 2,075,361 to 2,076,746
_1701
Position (kb)
2073
2074
2075
2076 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2072.409 kb on - strand at 2073.110 kb on - strand at 2073.110 kb on - strand at 2073.228 kb on - strand at 2073.239 kb on - strand at 2073.305 kb on - strand at 2073.717 kb on - strand, within DvMF_1700 at 2073.730 kb on - strand, within DvMF_1700 at 2073.800 kb on + strand, within DvMF_1700 at 2073.812 kb on + strand, within DvMF_1700 at 2074.390 kb on + strand, within DvMF_1700 at 2074.554 kb on - strand, within DvMF_1700 at 2074.636 kb on + strand, within DvMF_1700 at 2074.882 kb on + strand at 2074.963 kb on + strand at 2075.134 kb on - strand at 2075.234 kb on - strand at 2075.336 kb on - strand at 2075.494 kb on - strand at 2075.540 kb on + strand, within DvMF_1701 at 2075.544 kb on - strand, within DvMF_1701 at 2075.548 kb on - strand, within DvMF_1701 at 2075.959 kb on - strand, within DvMF_1701 at 2076.047 kb on - strand, within DvMF_1701
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.0156 mg/ml remove 2,072,409 - -0.8 2,073,110 - -0.1 2,073,110 - -0.6 2,073,228 - -0.6 2,073,239 - -0.6 2,073,305 - +1.9 2,073,717 - DvMF_1700 0.25 +0.4 2,073,730 - DvMF_1700 0.26 -1.2 2,073,800 + DvMF_1700 0.30 -0.5 2,073,812 + DvMF_1700 0.30 -3.8 2,074,390 + DvMF_1700 0.63 +0.1 2,074,554 - DvMF_1700 0.72 -1.1 2,074,636 + DvMF_1700 0.77 -0.6 2,074,882 + -0.1 2,074,963 + -0.9 2,075,134 - -1.0 2,075,234 - -1.6 2,075,336 - -0.1 2,075,494 - -1.2 2,075,540 + DvMF_1701 0.13 -0.9 2,075,544 - DvMF_1701 0.13 +0.2 2,075,548 - DvMF_1701 0.13 -0.4 2,075,959 - DvMF_1701 0.43 +0.5 2,076,047 - DvMF_1701 0.49 -1.6
Or see this region's nucleotide sequence