Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1492

Experiment: MoYLS4 with Doxycycline hyclate 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1490 and DvMF_1491 are separated by 4 nucleotidesDvMF_1491 and DvMF_1492 are separated by 325 nucleotidesDvMF_1492 and DvMF_1493 overlap by 1 nucleotides DvMF_1490: DvMF_1490 - Nitrite reductase (cytochrome; ammonia-forming) (RefSeq), at 1,828,105 to 1,829,694 _1490 DvMF_1491: DvMF_1491 - cytochrome c nitrite reductase small subunit (RefSeq), at 1,829,699 to 1,830,178 _1491 DvMF_1492: DvMF_1492 - multi-sensor hybrid histidine kinase (RefSeq), at 1,830,504 to 1,833,593 _1492 DvMF_1493: DvMF_1493 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,833,593 to 1,835,533 _1493 Position (kb) 1830 1831 1832 1833 1834Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1829.643 kb on - strandat 1829.886 kb on + strand, within DvMF_1491at 1829.896 kb on + strand, within DvMF_1491at 1829.921 kb on - strand, within DvMF_1491at 1830.007 kb on - strand, within DvMF_1491at 1830.490 kb on + strandat 1830.786 kb on + strandat 1830.839 kb on + strand, within DvMF_1492at 1830.847 kb on - strand, within DvMF_1492at 1831.167 kb on + strand, within DvMF_1492at 1831.321 kb on - strand, within DvMF_1492at 1831.728 kb on - strand, within DvMF_1492at 1831.819 kb on + strand, within DvMF_1492at 1832.094 kb on + strand, within DvMF_1492at 1832.136 kb on + strand, within DvMF_1492at 1832.339 kb on + strand, within DvMF_1492at 1833.094 kb on - strand, within DvMF_1492at 1833.263 kb on - strand, within DvMF_1492at 1833.319 kb on - strandat 1833.326 kb on - strandat 1833.330 kb on - strandat 1833.451 kb on + strandat 1833.682 kb on - strandat 1833.741 kb on + strandat 1833.749 kb on - strandat 1833.789 kb on - strand, within DvMF_1493at 1833.876 kb on + strand, within DvMF_1493at 1834.000 kb on + strand, within DvMF_1493at 1834.093 kb on + strand, within DvMF_1493at 1834.265 kb on + strand, within DvMF_1493at 1834.265 kb on + strand, within DvMF_1493at 1834.273 kb on - strand, within DvMF_1493at 1834.331 kb on + strand, within DvMF_1493at 1834.339 kb on - strand, within DvMF_1493at 1834.349 kb on - strand, within DvMF_1493at 1834.449 kb on + strand, within DvMF_1493at 1834.490 kb on + strand, within DvMF_1493at 1834.496 kb on - strand, within DvMF_1493

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.0156 mg/ml
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1,829,643 - -0.1
1,829,886 + DvMF_1491 0.39 +0.4
1,829,896 + DvMF_1491 0.41 -0.1
1,829,921 - DvMF_1491 0.46 -1.2
1,830,007 - DvMF_1491 0.64 +0.4
1,830,490 + -3.4
1,830,786 + +0.4
1,830,839 + DvMF_1492 0.11 -0.1
1,830,847 - DvMF_1492 0.11 +1.6
1,831,167 + DvMF_1492 0.21 -0.4
1,831,321 - DvMF_1492 0.26 -3.8
1,831,728 - DvMF_1492 0.40 -1.9
1,831,819 + DvMF_1492 0.43 -0.3
1,832,094 + DvMF_1492 0.51 -3.2
1,832,136 + DvMF_1492 0.53 -1.5
1,832,339 + DvMF_1492 0.59 -1.1
1,833,094 - DvMF_1492 0.84 -1.7
1,833,263 - DvMF_1492 0.89 -0.6
1,833,319 - -1.4
1,833,326 - -0.2
1,833,330 - +0.2
1,833,451 + -0.7
1,833,682 - -3.8
1,833,741 + +0.8
1,833,749 - -0.6
1,833,789 - DvMF_1493 0.10 +0.6
1,833,876 + DvMF_1493 0.15 -4.0
1,834,000 + DvMF_1493 0.21 -0.7
1,834,093 + DvMF_1493 0.26 -1.0
1,834,265 + DvMF_1493 0.35 -0.5
1,834,265 + DvMF_1493 0.35 -0.7
1,834,273 - DvMF_1493 0.35 +1.3
1,834,331 + DvMF_1493 0.38 -0.9
1,834,339 - DvMF_1493 0.38 -0.2
1,834,349 - DvMF_1493 0.39 -0.5
1,834,449 + DvMF_1493 0.44 -1.0
1,834,490 + DvMF_1493 0.46 -0.6
1,834,496 - DvMF_1493 0.47 -3.5

Or see this region's nucleotide sequence