Experiment: MoYLS4 with Doxycycline hyclate 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1236 and DvMF_1237 are separated by 304 nucleotides DvMF_1237 and DvMF_1238 are separated by 98 nucleotides DvMF_1238 and DvMF_1239 are separated by 385 nucleotides
DvMF_1236: DvMF_1236 - hypothetical protein (RefSeq), at 1,523,943 to 1,524,692
_1236
DvMF_1237: DvMF_1237 - CreA family protein (RefSeq), at 1,524,997 to 1,525,536
_1237
DvMF_1238: DvMF_1238 - spermine synthase (RefSeq), at 1,525,635 to 1,527,209
_1238
DvMF_1239: DvMF_1239 - transcriptional regulator, TraR/DksA family (RefSeq), at 1,527,595 to 1,527,954
_1239
Position (kb)
1525
1526
1527
1528 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1524.884 kb on - strand at 1525.011 kb on + strand at 1525.291 kb on - strand, within DvMF_1237 at 1525.383 kb on - strand, within DvMF_1237 at 1525.536 kb on + strand at 1525.653 kb on + strand at 1525.819 kb on - strand, within DvMF_1238 at 1525.911 kb on - strand, within DvMF_1238 at 1525.955 kb on - strand, within DvMF_1238 at 1526.148 kb on - strand, within DvMF_1238 at 1526.302 kb on - strand, within DvMF_1238 at 1526.496 kb on + strand, within DvMF_1238 at 1526.586 kb on - strand, within DvMF_1238 at 1526.642 kb on - strand, within DvMF_1238 at 1526.787 kb on - strand, within DvMF_1238 at 1526.787 kb on - strand, within DvMF_1238 at 1526.839 kb on + strand, within DvMF_1238 at 1526.852 kb on - strand, within DvMF_1238 at 1526.862 kb on - strand, within DvMF_1238 at 1527.243 kb on - strand at 1527.492 kb on - strand at 1527.668 kb on - strand, within DvMF_1239 at 1527.912 kb on + strand, within DvMF_1239 at 1527.975 kb on + strand at 1528.107 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.0156 mg/ml remove 1,524,884 - -1.0 1,525,011 + -4.2 1,525,291 - DvMF_1237 0.54 -1.1 1,525,383 - DvMF_1237 0.71 -0.6 1,525,536 + -0.1 1,525,653 + -0.9 1,525,819 - DvMF_1238 0.12 -0.5 1,525,911 - DvMF_1238 0.18 +0.9 1,525,955 - DvMF_1238 0.20 -0.7 1,526,148 - DvMF_1238 0.33 -1.1 1,526,302 - DvMF_1238 0.42 -0.7 1,526,496 + DvMF_1238 0.55 +0.7 1,526,586 - DvMF_1238 0.60 -0.4 1,526,642 - DvMF_1238 0.64 -0.7 1,526,787 - DvMF_1238 0.73 -0.3 1,526,787 - DvMF_1238 0.73 -0.1 1,526,839 + DvMF_1238 0.76 -0.2 1,526,852 - DvMF_1238 0.77 -0.8 1,526,862 - DvMF_1238 0.78 -0.8 1,527,243 - -0.6 1,527,492 - +0.5 1,527,668 - DvMF_1239 0.20 -0.7 1,527,912 + DvMF_1239 0.88 -1.8 1,527,975 + -1.6 1,528,107 - -0.4
Or see this region's nucleotide sequence