Experiment: MoYLS4 with Doxycycline hyclate 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1197 and DvMF_1198 are separated by 177 nucleotides DvMF_1198 and DvMF_1199 are separated by 421 nucleotides DvMF_1199 and DvMF_1200 are separated by 160 nucleotides
DvMF_1197: DvMF_1197 - hypothetical protein (RefSeq), at 1,475,935 to 1,476,207
_1197
DvMF_1198: DvMF_1198 - no description, at 1,476,385 to 1,476,585
_1198
DvMF_1199: DvMF_1199 - putative ABC transporter solute-binding protein (RefSeq), at 1,477,007 to 1,478,299
_1199
DvMF_1200: DvMF_1200 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 1,478,460 to 1,479,596
_1200
Position (kb)
1477
1478
1479 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1476.022 kb on - strand, within DvMF_1197 at 1476.173 kb on + strand, within DvMF_1197 at 1476.491 kb on + strand, within DvMF_1198 at 1476.724 kb on + strand at 1476.872 kb on - strand at 1476.979 kb on + strand at 1477.301 kb on - strand, within DvMF_1199 at 1477.387 kb on + strand, within DvMF_1199 at 1477.459 kb on - strand, within DvMF_1199 at 1477.519 kb on - strand, within DvMF_1199 at 1477.752 kb on - strand, within DvMF_1199 at 1477.800 kb on - strand, within DvMF_1199 at 1477.819 kb on + strand, within DvMF_1199 at 1478.004 kb on - strand, within DvMF_1199 at 1478.140 kb on - strand, within DvMF_1199 at 1478.236 kb on - strand at 1478.326 kb on + strand at 1478.480 kb on - strand at 1478.522 kb on + strand at 1478.740 kb on + strand, within DvMF_1200 at 1478.950 kb on + strand, within DvMF_1200 at 1479.279 kb on + strand, within DvMF_1200
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.0156 mg/ml remove 1,476,022 - DvMF_1197 0.32 -1.7 1,476,173 + DvMF_1197 0.87 -1.1 1,476,491 + DvMF_1198 0.53 -0.7 1,476,724 + -1.1 1,476,872 - -3.6 1,476,979 + +0.3 1,477,301 - DvMF_1199 0.23 +0.2 1,477,387 + DvMF_1199 0.29 +0.2 1,477,459 - DvMF_1199 0.35 +0.6 1,477,519 - DvMF_1199 0.40 +0.4 1,477,752 - DvMF_1199 0.58 -2.4 1,477,800 - DvMF_1199 0.61 -1.7 1,477,819 + DvMF_1199 0.63 +2.3 1,478,004 - DvMF_1199 0.77 -0.7 1,478,140 - DvMF_1199 0.88 -0.7 1,478,236 - -1.7 1,478,326 + -0.5 1,478,480 - +0.0 1,478,522 + -0.2 1,478,740 + DvMF_1200 0.25 -1.0 1,478,950 + DvMF_1200 0.43 -1.0 1,479,279 + DvMF_1200 0.72 -0.5
Or see this region's nucleotide sequence