Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1153

Experiment: MoYLS4 with Doxycycline hyclate 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1152 and DvMF_1153 are separated by 220 nucleotidesDvMF_1153 and DvMF_1154 are separated by 168 nucleotidesDvMF_1154 and DvMF_1155 are separated by 135 nucleotides DvMF_1152: DvMF_1152 - Domain of unkown function DUF1786 putative pyruvate format-lyase activating enzyme (RefSeq), at 1,413,260 to 1,414,408 _1152 DvMF_1153: DvMF_1153 - Phenylacetate--CoA ligase (RefSeq), at 1,414,629 to 1,415,933 _1153 DvMF_1154: DvMF_1154 - protein of unknown function DUF456 (RefSeq), at 1,416,102 to 1,416,611 _1154 DvMF_1155: DvMF_1155 - RNA methyltransferase, TrmH family, group 1 (RefSeq), at 1,416,747 to 1,417,547 _1155 Position (kb) 1414 1415 1416Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1413.799 kb on + strand, within DvMF_1152at 1413.901 kb on + strand, within DvMF_1152at 1414.027 kb on + strand, within DvMF_1152at 1414.096 kb on - strand, within DvMF_1152at 1414.108 kb on + strand, within DvMF_1152at 1414.249 kb on - strand, within DvMF_1152at 1414.705 kb on + strandat 1414.875 kb on - strand, within DvMF_1153at 1414.935 kb on - strand, within DvMF_1153at 1415.160 kb on - strand, within DvMF_1153at 1415.264 kb on - strand, within DvMF_1153at 1415.293 kb on + strand, within DvMF_1153at 1415.331 kb on - strand, within DvMF_1153at 1415.358 kb on + strand, within DvMF_1153at 1415.391 kb on - strand, within DvMF_1153at 1415.420 kb on - strand, within DvMF_1153at 1415.484 kb on - strand, within DvMF_1153at 1415.633 kb on + strand, within DvMF_1153at 1415.839 kb on + strandat 1415.847 kb on - strandat 1415.910 kb on - strandat 1416.053 kb on + strandat 1416.162 kb on - strand, within DvMF_1154at 1416.591 kb on + strandat 1416.596 kb on + strandat 1416.604 kb on - strandat 1416.647 kb on + strandat 1416.890 kb on + strand, within DvMF_1155

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.0156 mg/ml
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1,413,799 + DvMF_1152 0.47 -1.2
1,413,901 + DvMF_1152 0.56 -0.8
1,414,027 + DvMF_1152 0.67 -1.3
1,414,096 - DvMF_1152 0.73 -1.4
1,414,108 + DvMF_1152 0.74 -0.8
1,414,249 - DvMF_1152 0.86 -4.0
1,414,705 + -0.5
1,414,875 - DvMF_1153 0.19 -1.0
1,414,935 - DvMF_1153 0.23 -2.8
1,415,160 - DvMF_1153 0.41 -0.2
1,415,264 - DvMF_1153 0.49 -0.4
1,415,293 + DvMF_1153 0.51 -0.6
1,415,331 - DvMF_1153 0.54 -1.0
1,415,358 + DvMF_1153 0.56 +0.2
1,415,391 - DvMF_1153 0.58 -0.6
1,415,420 - DvMF_1153 0.61 -0.5
1,415,484 - DvMF_1153 0.66 -0.4
1,415,633 + DvMF_1153 0.77 -0.5
1,415,839 + -1.0
1,415,847 - -3.7
1,415,910 - -2.9
1,416,053 + -1.1
1,416,162 - DvMF_1154 0.12 -1.5
1,416,591 + -2.2
1,416,596 + -1.7
1,416,604 - -0.4
1,416,647 + -1.2
1,416,890 + DvMF_1155 0.18 -0.2

Or see this region's nucleotide sequence