Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0634

Experiment: MoYLS4 with Doxycycline hyclate 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0633 and DvMF_0634 overlap by 4 nucleotidesDvMF_0634 and DvMF_0635 are separated by 150 nucleotides DvMF_0633: DvMF_0633 - Phosphoglycerate mutase (RefSeq), at 755,477 to 756,460 _0633 DvMF_0634: DvMF_0634 - metal dependent phosphohydrolase (RefSeq), at 756,457 to 758,001 _0634 DvMF_0635: DvMF_0635 - protein of unknown function DUF182 (RefSeq), at 758,152 to 759,240 _0635 Position (kb) 756 757 758 759Strain fitness (log2 ratio) -3 -2 -1 0 1at 755.596 kb on + strand, within DvMF_0633at 755.625 kb on - strand, within DvMF_0633at 755.777 kb on - strand, within DvMF_0633at 755.947 kb on + strand, within DvMF_0633at 756.144 kb on - strand, within DvMF_0633at 756.144 kb on - strand, within DvMF_0633at 756.338 kb on - strand, within DvMF_0633at 756.456 kb on + strandat 756.591 kb on + strandat 756.701 kb on + strand, within DvMF_0634at 756.705 kb on + strand, within DvMF_0634at 757.122 kb on - strand, within DvMF_0634at 757.422 kb on - strand, within DvMF_0634at 757.725 kb on + strand, within DvMF_0634at 757.778 kb on - strand, within DvMF_0634at 757.870 kb on - strandat 758.224 kb on + strandat 758.237 kb on - strandat 758.393 kb on + strand, within DvMF_0635at 758.403 kb on + strand, within DvMF_0635at 758.442 kb on + strand, within DvMF_0635at 758.450 kb on - strand, within DvMF_0635

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.0156 mg/ml
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755,596 + DvMF_0633 0.12 -0.7
755,625 - DvMF_0633 0.15 -0.4
755,777 - DvMF_0633 0.30 -0.7
755,947 + DvMF_0633 0.48 -0.2
756,144 - DvMF_0633 0.68 -1.2
756,144 - DvMF_0633 0.68 -1.1
756,338 - DvMF_0633 0.88 -3.4
756,456 + -0.7
756,591 + +0.2
756,701 + DvMF_0634 0.16 -0.3
756,705 + DvMF_0634 0.16 -0.5
757,122 - DvMF_0634 0.43 -1.7
757,422 - DvMF_0634 0.62 -0.9
757,725 + DvMF_0634 0.82 -0.0
757,778 - DvMF_0634 0.86 -1.3
757,870 - -0.6
758,224 + -0.8
758,237 - -2.3
758,393 + DvMF_0635 0.22 -1.7
758,403 + DvMF_0635 0.23 -0.8
758,442 + DvMF_0635 0.27 -2.8
758,450 - DvMF_0635 0.27 -1.2

Or see this region's nucleotide sequence