Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0408

Experiment: MoYLS4 with Doxycycline hyclate 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0406 and DvMF_0407 overlap by 17 nucleotidesDvMF_0407 and DvMF_0408 are separated by 5 nucleotidesDvMF_0408 and DvMF_0409 are separated by 36 nucleotidesDvMF_0409 and DvMF_0410 are separated by 193 nucleotides DvMF_0406: DvMF_0406 - Tetratricopeptide TPR_4 (RefSeq), at 476,982 to 477,947 _0406 DvMF_0407: DvMF_0407 - Septum formation initiator (RefSeq), at 477,931 to 478,260 _0407 DvMF_0408: DvMF_0408 - hypothetical protein (RefSeq), at 478,266 to 478,538 _0408 DvMF_0409: DvMF_0409 - CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase (RefSeq), at 478,575 to 479,162 _0409 DvMF_0410: DvMF_0410 - Mrp protein (RefSeq), at 479,356 to 480,252 _0410 Position (kb) 478 479Strain fitness (log2 ratio) -3 -2 -1 0 1at 477.550 kb on - strand, within DvMF_0406at 477.568 kb on + strand, within DvMF_0406at 477.576 kb on - strand, within DvMF_0406at 478.398 kb on - strand, within DvMF_0408at 478.512 kb on + strandat 479.171 kb on + strandat 479.201 kb on - strandat 479.209 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.0156 mg/ml
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477,550 - DvMF_0406 0.59 -0.1
477,568 + DvMF_0406 0.61 -3.5
477,576 - DvMF_0406 0.61 -0.3
478,398 - DvMF_0408 0.48 +0.6
478,512 + +1.0
479,171 + -0.9
479,201 - -0.8
479,209 - -1.0

Or see this region's nucleotide sequence