Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0271

Experiment: MoYLS4 with Doxycycline hyclate 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0270 and DvMF_0271 are separated by 58 nucleotidesDvMF_0271 and DvMF_0272 are separated by 584 nucleotides DvMF_0270: DvMF_0270 - nickel-dependent hydrogenase large subunit (RefSeq), at 307,818 to 309,521 _0270 DvMF_0271: DvMF_0271 - hydrogenase (NiFe) small subunit HydA (RefSeq), at 309,580 to 310,533 _0271 DvMF_0272: DvMF_0272 - hydrogenase maturation protease (RefSeq), at 311,118 to 311,597 _0272 Position (kb) 309 310 311Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 308.609 kb on - strand, within DvMF_0270at 308.701 kb on - strand, within DvMF_0270at 309.124 kb on - strand, within DvMF_0270at 309.125 kb on - strand, within DvMF_0270at 309.131 kb on + strand, within DvMF_0270at 309.176 kb on + strand, within DvMF_0270at 309.176 kb on + strand, within DvMF_0270at 309.287 kb on + strand, within DvMF_0270at 309.305 kb on - strand, within DvMF_0270at 309.353 kb on + strandat 309.428 kb on + strandat 309.497 kb on - strandat 309.528 kb on + strandat 309.561 kb on + strandat 309.600 kb on - strandat 309.643 kb on - strandat 309.643 kb on - strandat 309.643 kb on - strandat 309.916 kb on + strand, within DvMF_0271at 310.489 kb on + strandat 310.561 kb on - strandat 310.599 kb on - strandat 310.635 kb on + strandat 311.455 kb on - strand, within DvMF_0272at 311.486 kb on + strand, within DvMF_0272

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.0156 mg/ml
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308,609 - DvMF_0270 0.46 -1.8
308,701 - DvMF_0270 0.52 -0.9
309,124 - DvMF_0270 0.77 -0.7
309,125 - DvMF_0270 0.77 -0.2
309,131 + DvMF_0270 0.77 -0.3
309,176 + DvMF_0270 0.80 -1.4
309,176 + DvMF_0270 0.80 +0.1
309,287 + DvMF_0270 0.86 +0.9
309,305 - DvMF_0270 0.87 +0.4
309,353 + +0.9
309,428 + +0.1
309,497 - -1.5
309,528 + -0.8
309,561 + +1.7
309,600 - -1.9
309,643 - -1.4
309,643 - -1.0
309,643 - -0.2
309,916 + DvMF_0271 0.35 -3.6
310,489 + -0.4
310,561 - -1.0
310,599 - +0.0
310,635 + -0.6
311,455 - DvMF_0272 0.70 -4.1
311,486 + DvMF_0272 0.77 -2.5

Or see this region's nucleotide sequence