Strain Fitness in Shewanella loihica PV-4 around Shew_1691

Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 10 mM
1,944,443	-				+0.0
1,944,443	-				+0.2
1,944,452	+				+1.5
1,944,550	-		Shew_1690	0.12	+0.7
1,944,851	-		Shew_1690	0.46	-0.3
1,944,970	+		Shew_1690	0.59	-0.6
1,944,978	-		Shew_1690	0.60	-0.1
1,944,978	-		Shew_1690	0.60	+1.6
1,945,068	-		Shew_1690	0.70	+1.0
1,945,100	+		Shew_1690	0.74	-0.1
1,945,109	+		Shew_1690	0.75	+0.3
1,945,153	+		Shew_1690	0.80	-0.9
1,945,198	+		Shew_1690	0.85	+0.7
1,945,232	-		Shew_1690	0.89	+0.4
1,945,252	+				-0.6
1,945,300	+				-1.0
1,945,300	+				+0.3
1,945,300	+				+0.3
1,945,300	+				-0.6
1,945,308	-				+0.9
1,945,308	-				-0.0
1,945,378	+				+0.0
1,945,378	+				+0.7
1,945,378	+				+0.9
1,945,378	+				+0.1
1,945,381	-				+1.1
1,945,386	+				+1.0
1,945,386	-				+0.5
1,945,386	-				-0.3
1,945,386	-				-1.1
1,945,388	+				+0.0
1,945,388	+				+0.0
1,945,394	-				+0.9
1,945,396	-				-0.4
1,945,419	-				-0.1
1,945,516	+		Shew_1691	0.19	-1.0
1,945,539	+		Shew_1691	0.24	-0.1
1,945,546	+		Shew_1691	0.26	+0.2
1,945,558	-		Shew_1691	0.28	+0.4
1,945,568	-		Shew_1691	0.30	+0.3
1,945,578	-		Shew_1691	0.32	-0.4
1,945,596	-		Shew_1691	0.36	+0.1
1,945,637	+		Shew_1691	0.44	+0.9
1,945,637	+		Shew_1691	0.44	-0.1
1,945,637	+		Shew_1691	0.44	+1.8
1,945,637	+		Shew_1691	0.44	-0.4
1,945,644	+		Shew_1691	0.46	+0.8
1,945,644	+		Shew_1691	0.46	+0.2
1,945,645	-		Shew_1691	0.46	+0.1
1,945,645	-		Shew_1691	0.46	+0.4
1,945,645	-		Shew_1691	0.46	+0.6
1,945,660	+		Shew_1691	0.49	+0.1
1,945,666	+		Shew_1691	0.50	+0.1
1,945,666	-		Shew_1691	0.50	-4.3
1,945,675	+		Shew_1691	0.52	+0.3
1,945,683	-		Shew_1691	0.54	+0.6
1,945,683	-		Shew_1691	0.54	+0.4
1,945,683	-		Shew_1691	0.54	+0.5
1,945,683	-		Shew_1691	0.54	+0.4
1,945,683	-		Shew_1691	0.54	+0.9
1,945,683	-		Shew_1691	0.54	+0.6
1,945,700	-		Shew_1691	0.57	+0.0
1,945,705	-		Shew_1691	0.58	+0.4
1,945,791	+		Shew_1691	0.76	-0.1
1,945,791	+		Shew_1691	0.76	-0.0
1,945,791	+		Shew_1691	0.76	-0.1
1,945,791	+		Shew_1691	0.76	+0.7
1,945,792	+		Shew_1691	0.76	+1.2
1,945,799	+		Shew_1691	0.77	-0.2
1,945,799	-		Shew_1691	0.77	+0.3
1,945,799	-		Shew_1691	0.77	+2.9
1,945,801	+		Shew_1691	0.78	+0.7
1,945,802	-		Shew_1691	0.78	-0.1
1,945,802	-		Shew_1691	0.78	+0.7
1,945,802	-		Shew_1691	0.78	+0.5
1,945,807	+		Shew_1691	0.79	+0.2
1,945,807	+		Shew_1691	0.79	-0.0
1,945,859	+		Shew_1691	0.90	-0.7
1,945,859	+		Shew_1691	0.90	+0.6
1,945,902	+				-0.2
1,945,916	+				+0.2
1,945,916	+				+0.3
1,945,916	+				-0.3
1,945,916	+				+1.0
1,945,916	+				-2.1
1,945,916	+				+0.1
1,945,924	-				+0.7
1,945,925	+				+0.4
1,945,925	+				+0.1
1,945,930	+				-0.3
1,945,930	+				+0.2
1,945,930	+				-0.3
1,945,930	+				+1.1
1,945,930	+				-0.3
1,945,930	+				-0.1
1,945,930	+				-0.6
1,945,930	+				+0.6
1,945,930	+				+0.4
1,945,930	+				-0.2
1,945,930	+				-0.8
1,945,930	+				+0.6
1,945,930	+				-1.6
1,945,930	+				+4.6
1,945,930	+				+0.7
1,945,930	+				-0.3
1,945,930	+				-0.0
1,945,930	+				-0.1
1,945,930	+				+0.5
1,945,930	+				-0.1
1,945,930	+				-0.3
1,945,930	+				+0.4
1,945,930	+				+0.2
1,945,930	+				-0.7
1,945,930	+				+1.1
1,945,930	+				-0.1
1,945,930	+				+0.2
1,945,930	+				-1.7
1,945,930	+				+1.3
1,945,930	+				+0.1
1,945,930	+				-0.8
1,945,930	+				+0.6
1,945,930	+				+0.7
1,945,930	+				+0.7
1,945,930	+				+0.1
1,945,930	+				+1.1
1,945,930	+				-0.0
1,945,930	+				+0.8
1,945,930	+				-0.5
1,945,930	+				+0.4
1,945,931	+				+0.3
1,945,931	+				-3.5
1,945,931	+				-0.6
1,945,931	+				-0.0
1,945,931	+				+0.2
1,945,931	+				-0.3
1,945,938	-				+0.9
1,945,938	-				+0.5
1,945,938	-				+1.0
1,945,938	-				+1.1
1,945,938	-				+0.5
1,945,938	-				+0.7
1,945,938	-				+0.4
1,945,938	-				+0.4
1,945,938	-				+0.0
1,945,938	-				+0.3
1,945,938	-				+1.3
1,945,938	-				+1.0
1,945,938	-				+0.2
1,945,938	-				+1.5
1,945,938	-				-1.1
1,945,938	-				+0.7
1,945,938	-				+0.5
1,945,938	-				+0.3
1,945,938	-				-0.1
1,945,938	-				+0.7
1,945,939	-				+0.8
1,945,939	-				+0.8
1,945,939	-				+0.2
1,945,939	-				+1.1
1,945,939	-				+0.6
1,945,941	+				+0.3
1,945,946	+				+0.1
1,945,949	-				+0.8
1,945,962	+				-0.2
1,945,973	+				-1.8
1,945,981	-				+0.7
1,946,004	-				-2.2
1,946,005	+				+0.5
1,946,005	+				-4.5
1,946,013	-				+1.0
1,946,013	-				+1.0
1,946,013	-				+1.3
1,946,013	-				+0.5
1,946,087	+		Shew_1692	0.13	-0.5
1,946,095	+		Shew_1692	0.14	+0.3
1,946,095	+		Shew_1692	0.14	+1.0
1,946,095	+		Shew_1692	0.14	+0.1
1,946,096	+		Shew_1692	0.14	+0.5
1,946,103	-		Shew_1692	0.16	+0.2
1,946,103	-		Shew_1692	0.16	+6.7
1,946,104	-		Shew_1692	0.16	+1.3
1,946,134	-		Shew_1692	0.22	+0.9
1,946,144	-		Shew_1692	0.24	-0.1
1,946,186	+		Shew_1692	0.32	-2.6
1,946,186	+		Shew_1692	0.32	+0.3
1,946,194	+		Shew_1692	0.34	-0.7
1,946,194	+		Shew_1692	0.34	-0.2
1,946,194	+		Shew_1692	0.34	-0.2
1,946,194	+		Shew_1692	0.34	+0.0
1,946,197	-		Shew_1692	0.34	+0.7
1,946,197	-		Shew_1692	0.34	+1.1
1,946,202	-		Shew_1692	0.35	+1.0
1,946,233	-		Shew_1692	0.41	-0.0
1,946,253	+		Shew_1692	0.45	-0.1
1,946,267	+		Shew_1692	0.48	-0.3
1,946,275	+		Shew_1692	0.49	-1.2
1,946,275	+		Shew_1692	0.49	+0.2
1,946,276	+		Shew_1692	0.50	-0.5
1,946,277	+		Shew_1692	0.50	-0.0
1,946,283	-		Shew_1692	0.51	+0.7
1,946,283	-		Shew_1692	0.51	+0.2
1,946,283	-		Shew_1692	0.51	+0.7
1,946,283	-		Shew_1692	0.51	+0.2
1,946,283	-		Shew_1692	0.51	+1.8
1,946,284	-		Shew_1692	0.51	+0.5
1,946,328	-		Shew_1692	0.60	+0.3
1,946,328	-		Shew_1692	0.60	+0.3
1,946,333	+		Shew_1692	0.61	+1.1
1,946,362	+		Shew_1692	0.66	-0.3
1,946,362	+		Shew_1692	0.66	+0.4
1,946,364	+		Shew_1692	0.67	-0.6
1,946,364	+		Shew_1692	0.67	-0.2
1,946,364	+		Shew_1692	0.67	+1.3
1,946,372	-		Shew_1692	0.68	-0.2
1,946,372	-		Shew_1692	0.68	+0.3
1,946,372	-		Shew_1692	0.68	+0.9
1,946,429	+		Shew_1692	0.79	-0.7
1,946,429	+		Shew_1692	0.79	-0.6
1,946,429	+		Shew_1692	0.79	-2.8
1,946,429	+		Shew_1692	0.79	+0.1
1,946,429	+		Shew_1692	0.79	-0.5
1,946,429	+		Shew_1692	0.79	+0.3
1,946,429	+		Shew_1692	0.79	-0.3
1,946,429	+		Shew_1692	0.79	+0.3
1,946,429	+		Shew_1692	0.79	+0.3
1,946,437	-		Shew_1692	0.81	+0.4
1,946,437	-		Shew_1692	0.81	+0.9
1,946,437	-		Shew_1692	0.81	+0.4
1,946,437	-		Shew_1692	0.81	+1.7
1,946,437	-		Shew_1692	0.81	-0.3
1,946,479	+		Shew_1692	0.89	+0.7
1,946,489	-				+0.5
1,946,524	+				+0.6
1,946,524	+				-1.9
1,946,524	+				+0.4
1,946,524	+				-0.7
1,946,532	-				+2.2
1,946,542	-				-0.1
1,946,544	+				+0.5
1,946,564	-				+1.2
1,946,577	+				+1.4
1,946,582	+				+0.0
1,946,585	-				+0.5
1,946,587	+				-0.6
1,946,590	-				+0.8
1,946,595	-				+0.9
1,946,600	+				-0.8
1,946,608	-				+0.7
1,946,614	+				-0.5
1,946,614	+				+0.9
1,946,614	+				+1.3
1,946,614	+				+0.0
1,946,614	+				-0.3
1,946,614	+				+0.2
1,946,614	+				-1.5
1,946,614	+				-0.4
1,946,614	+				-0.1
1,946,614	+				-2.4
1,946,614	+				+0.0
1,946,614	+				+0.3
1,946,614	+				-0.1
1,946,614	+				-0.1
1,946,622	-				+1.5
1,946,622	-				+2.1
1,946,622	-				+1.4
1,946,622	-				+3.3
1,946,622	-				+1.4
1,946,622	-				+0.8
1,946,622	-				+1.3
1,946,624	+				+0.7
1,946,624	+				-0.2
1,946,624	+				-0.4
1,946,632	-				+2.5
1,946,632	-				-0.2
1,946,632	-				+0.2
1,946,632	-				+1.3
1,946,642	-				-0.5
1,946,660	+				+1.3
1,946,660	+				+0.6
1,946,660	+				+1.1
1,946,660	+				-0.4
1,946,668	-				+0.2
1,946,670	+				+0.9
1,946,680	-				-0.3
1,946,700	-		Shew_1693	0.11	-1.2
1,946,705	+		Shew_1693	0.12	-0.7
1,946,705	+		Shew_1693	0.12	+0.5
1,946,723	+		Shew_1693	0.14	+0.3
1,946,731	-		Shew_1693	0.14	+0.3
1,946,741	+		Shew_1693	0.15	-0.1
1,946,764	-		Shew_1693	0.18	+0.4
1,946,839	+		Shew_1693	0.26	-1.0
1,946,852	-		Shew_1693	0.27	+0.3
1,946,873	+		Shew_1693	0.29	-0.2
1,946,878	+		Shew_1693	0.30	-0.6
1,946,881	-		Shew_1693	0.30	+0.1